Wall clock time and date at job start Wed Apr 1 2020 05:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09010 * 109.46779 * 2 1 4 4 N 1.46503 * 109.47275 * 119.99551 * 2 1 3 5 5 C 1.34771 * 120.00163 * 275.00347 * 4 2 1 6 6 O 1.21285 * 120.00142 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99835 * 179.97438 * 5 4 2 8 8 C 1.53004 * 109.46906 * 179.97438 * 7 5 4 9 9 C 1.52992 * 109.47287 * 299.99948 * 7 5 4 10 10 C 1.52998 * 109.47050 * 59.99965 * 7 5 4 11 11 C 1.50699 * 109.47323 * 240.00152 * 2 1 3 12 12 O 1.21282 * 119.99513 * 266.75550 * 11 2 1 13 13 N 1.34777 * 120.00172 * 86.75626 * 11 2 1 14 14 C 1.46490 * 120.00006 * 5.14585 * 13 11 2 15 15 C 1.50703 * 109.47738 * 266.94359 * 14 13 11 16 16 H 1.07997 * 119.99381 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00196 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00002 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00158 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47104 * 89.99783 * 19 17 15 21 21 H 1.48501 * 109.47298 * 210.00281 * 19 17 15 22 22 H 1.48504 * 109.46923 * 329.99879 * 19 17 15 23 23 C 1.46503 * 119.99905 * 185.15504 * 13 11 2 24 24 C 1.50699 * 109.46586 * 269.99879 * 23 13 11 25 25 C 1.38230 * 119.61992 * 94.97948 * 24 23 13 26 26 C 1.38630 * 119.15838 * 179.78381 * 25 24 23 27 27 C 1.38675 * 118.42349 * 0.47660 * 26 25 24 28 28 C 1.38180 * 119.15926 * 359.50107 * 27 26 25 29 29 N 1.31856 * 119.61791 * 274.99575 * 24 23 13 30 30 H 1.09003 * 109.47119 * 60.38307 * 1 2 3 31 31 H 1.09000 * 109.47071 * 180.38563 * 1 2 3 32 32 H 1.09000 * 109.47466 * 300.38700 * 1 2 3 33 33 H 0.97003 * 119.99563 * 95.00506 * 4 2 1 34 34 H 1.08993 * 109.46913 * 60.00039 * 8 7 5 35 35 H 1.09003 * 109.46710 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47064 * 299.99911 * 8 7 5 37 37 H 1.08998 * 109.47224 * 59.99989 * 9 7 5 38 38 H 1.08995 * 109.47537 * 180.02562 * 9 7 5 39 39 H 1.09001 * 109.47371 * 300.00231 * 9 7 5 40 40 H 1.09004 * 109.47214 * 60.00302 * 10 7 5 41 41 H 1.08994 * 109.47184 * 179.97438 * 10 7 5 42 42 H 1.08999 * 109.47521 * 300.00086 * 10 7 5 43 43 H 1.09007 * 109.47295 * 26.94836 * 14 13 11 44 44 H 1.09006 * 109.47293 * 146.94266 * 14 13 11 45 45 H 0.96997 * 119.99971 * 179.97438 * 18 17 15 46 46 H 1.08994 * 109.47153 * 150.00015 * 23 13 11 47 47 H 1.09008 * 109.47190 * 29.99415 * 23 13 11 48 48 H 1.07995 * 120.41704 * 359.97438 * 25 24 23 49 49 H 1.08004 * 120.78784 * 180.22705 * 26 25 24 50 50 H 1.07995 * 120.42091 * 179.77631 * 27 26 25 51 51 H 1.08003 * 119.61509 * 180.25206 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8589 1.1587 2.4115 7 6 2.6488 -0.7287 3.5878 8 6 2.7010 0.2547 4.7588 9 6 1.7044 -1.8822 3.9315 10 6 4.0513 -1.2796 3.3223 11 6 2.0323 -0.7104 -1.2305 12 8 2.2905 -1.8945 -1.1840 13 7 2.1947 -0.0298 -2.3824 14 6 1.9916 1.4206 -2.4111 15 6 0.5683 1.7210 -2.8050 16 1 -0.1163 0.9122 -3.0136 17 6 0.1406 3.0283 -2.9002 18 7 -1.1017 3.2903 -3.2435 19 14 1.3254 4.4272 -2.5416 20 1 2.0173 4.8234 -3.7944 21 1 0.5721 5.5884 -2.0036 22 1 2.3289 3.9819 -1.5415 23 6 2.5742 -0.7407 -3.6059 24 6 4.0765 -0.7863 -3.7148 25 6 4.7620 -1.8928 -3.2496 26 6 6.1436 -1.9266 -3.3587 27 6 6.7878 -0.8370 -3.9250 28 6 6.0358 0.2342 -4.3682 29 7 4.7220 0.2300 -4.2525 30 1 -0.3633 0.5079 -0.8934 31 1 -0.3633 -1.0276 0.0069 32 1 -0.3634 0.5198 0.8865 33 1 2.2491 -1.6317 1.1527 34 1 1.7021 0.6476 4.9480 35 1 3.0644 -0.2591 5.6487 36 1 3.3741 1.0762 4.5136 37 1 1.6676 -2.5826 3.0971 38 1 2.0671 -2.3958 4.8218 39 1 0.7052 -1.4897 4.1206 40 1 4.7242 -0.4578 3.0775 41 1 4.4144 -1.7931 4.2124 42 1 4.0146 -1.9800 2.4879 43 1 2.1902 1.8350 -1.4226 44 1 2.6714 1.8685 -3.1360 45 1 -1.4027 4.2100 -3.3101 46 1 2.1628 -0.2205 -4.4708 47 1 2.1814 -1.7570 -3.5723 48 1 4.2277 -2.7218 -2.8096 49 1 6.7052 -2.7795 -3.0072 50 1 7.8633 -0.8276 -4.0226 51 1 6.5296 1.0849 -4.8142 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349432549.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:12 Heat of formation + Delta-G solvation = -44.274957 kcal Electronic energy + Delta-G solvation = -32077.284391 eV Core-core repulsion = 27976.517704 eV Total energy + Delta-G solvation = -4100.766686 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.45511 -40.01314 -39.00238 -35.69831 -35.44150 -34.66685 -32.79409 -32.29821 -31.68857 -30.08204 -28.18662 -27.48945 -27.18383 -26.54681 -24.24024 -23.41501 -22.74174 -22.42412 -21.39718 -19.53044 -18.52972 -17.22998 -16.96682 -16.69446 -16.41685 -16.13496 -15.54336 -15.43303 -15.21989 -15.06472 -14.56348 -14.23565 -13.95627 -13.91341 -13.58975 -13.39327 -13.20080 -13.06681 -12.86409 -12.46469 -12.45381 -12.38492 -12.15863 -11.94330 -11.83810 -11.81116 -11.68582 -11.58341 -11.50983 -11.10776 -11.05058 -11.02129 -10.92645 -10.62600 -10.23109 -9.79192 -9.62590 -9.49682 -9.42182 -9.25361 -8.90833 -8.75713 -8.66125 -7.95528 -6.19526 -4.20916 1.17762 1.39538 2.81988 2.99114 3.21497 3.26263 3.33524 3.36726 3.70217 4.13701 4.32567 4.47133 4.59378 4.67848 4.77584 4.86308 4.92108 5.02368 5.11838 5.14781 5.18821 5.27102 5.41127 5.47232 5.58019 5.61997 5.65444 5.68409 5.69869 5.75099 5.76104 5.81734 5.89581 5.95751 6.09100 6.11447 6.21403 6.23395 6.26415 6.28816 6.30443 6.45549 6.65608 6.74568 6.81929 6.96475 7.15173 7.44907 7.74172 7.93496 8.18077 8.35573 8.44792 8.62020 8.83093 9.40106 10.92226 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007057 B = 0.004870 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3966.532182 B = 5747.777496 C = 8276.902678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.129 3.871 3 H 0.113 0.887 4 N -0.713 5.713 5 C 0.520 3.480 6 O -0.537 6.537 7 C -0.086 4.086 8 C -0.126 4.126 9 C -0.140 4.140 10 C -0.141 4.141 11 C 0.519 3.481 12 O -0.568 6.568 13 N -0.573 5.573 14 C 0.202 3.798 15 C -0.540 4.540 16 H 0.082 0.918 17 C 0.082 3.918 18 N -0.888 5.888 19 Si 0.867 3.133 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.264 1.264 23 C 0.168 3.832 24 C 0.118 3.882 25 C -0.149 4.149 26 C -0.083 4.083 27 C -0.180 4.180 28 C 0.094 3.906 29 N -0.467 5.467 30 H 0.107 0.893 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.404 0.596 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.035 0.965 44 H 0.042 0.958 45 H 0.267 0.733 46 H 0.103 0.897 47 H 0.092 0.908 48 H 0.139 0.861 49 H 0.130 0.870 50 H 0.130 0.870 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.540 -11.438 7.831 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 H 0.130 0.870 4 N -0.366 5.366 5 C 0.306 3.694 6 O -0.413 6.413 7 C -0.089 4.089 8 C -0.184 4.184 9 C -0.198 4.198 10 C -0.198 4.198 11 C 0.307 3.693 12 O -0.449 6.449 13 N -0.301 5.301 14 C 0.081 3.919 15 C -0.578 4.578 16 H 0.100 0.900 17 C -0.122 4.122 18 N -0.525 5.525 19 Si 0.694 3.306 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.189 1.189 23 C 0.044 3.956 24 C -0.021 4.021 25 C -0.169 4.169 26 C -0.109 4.109 27 C -0.200 4.200 28 C -0.064 4.064 29 N -0.177 5.177 30 H 0.125 0.875 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.240 0.760 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.121 0.879 47 H 0.110 0.890 48 H 0.157 0.843 49 H 0.148 0.852 50 H 0.148 0.852 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 11.826 -10.290 7.519 17.386 hybrid contribution 1.228 -0.183 0.314 1.280 sum 13.054 -10.473 7.833 18.478 Atomic orbital electron populations 1.22144 0.91830 1.02093 1.05517 1.20858 0.96753 0.97817 0.82384 0.86960 1.45922 1.67130 1.14514 1.09033 1.20526 0.77443 0.87184 0.84264 1.90719 1.49751 1.15913 1.84897 1.20801 0.97041 0.97013 0.94025 1.21651 1.03124 0.98162 0.95454 1.21861 0.99058 0.96699 1.02150 1.21867 0.94390 1.01243 1.02317 1.20451 0.76953 0.86881 0.85048 1.90558 1.53371 1.15817 1.85125 1.47821 1.64954 1.10246 1.07122 1.20036 0.98563 0.75101 0.98150 1.21245 0.94324 0.93869 1.48357 0.89978 1.24789 0.94926 0.98460 0.94009 1.69872 1.15721 1.20170 1.46702 0.86973 0.81657 0.82621 0.79360 1.19800 1.20873 1.18902 1.20214 0.87207 0.99013 0.89182 1.21851 0.97686 0.89316 0.93218 1.22132 0.94745 1.00164 0.99900 1.21560 0.94602 0.98138 0.96626 1.22098 1.01109 0.95473 1.01311 1.22760 0.89689 0.97517 0.96404 1.67575 1.09893 1.26806 1.13388 0.87497 0.93043 0.91842 0.75981 0.91844 0.92226 0.91958 0.91962 0.91516 0.91935 0.92121 0.91477 0.91977 0.94745 0.94002 0.92325 0.87905 0.88968 0.84286 0.85225 0.85244 0.83031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.47 37.15 0.35 -2.62 16 2 C 0.13 2.42 2.39 -69.08 -0.17 2.26 16 3 H 0.11 2.38 5.31 -51.92 -0.28 2.10 16 4 N -0.71 -11.29 4.84 -54.93 -0.27 -11.56 16 5 C 0.52 8.26 6.45 -10.99 -0.07 8.18 16 6 O -0.54 -10.66 15.64 5.55 0.09 -10.58 16 7 C -0.09 -0.98 0.87 -155.66 -0.14 -1.12 16 8 C -0.13 -1.40 7.76 37.16 0.29 -1.11 16 9 C -0.14 -1.33 8.37 37.15 0.31 -1.02 16 10 C -0.14 -1.38 8.37 37.16 0.31 -1.07 16 11 C 0.52 9.98 6.86 -10.99 -0.08 9.90 16 12 O -0.57 -10.81 15.42 5.56 0.09 -10.73 16 13 N -0.57 -11.39 2.44 -176.43 -0.43 -11.82 16 14 C 0.20 4.54 4.05 -5.20 -0.02 4.52 16 15 C -0.54 -13.82 8.20 -34.44 -0.28 -14.10 16 16 H 0.08 2.28 7.74 -52.49 -0.41 1.87 16 17 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 18 N -0.89 -25.51 13.96 55.43 0.77 -24.74 16 19 Si 0.87 20.70 27.47 -169.99 -4.67 16.03 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.26 -6.18 6.54 56.52 0.37 -5.82 16 23 C 0.17 2.98 5.69 -5.19 -0.03 2.95 16 24 C 0.12 1.97 6.36 -82.59 -0.53 1.44 16 25 C -0.15 -2.14 9.72 -39.44 -0.38 -2.53 16 26 C -0.08 -0.99 10.18 -39.28 -0.40 -1.39 16 27 C -0.18 -2.06 10.11 -39.44 -0.40 -2.46 16 28 C 0.09 1.28 11.18 -17.55 -0.20 1.08 16 29 N -0.47 -7.95 10.27 -9.47 -0.10 -8.05 16 30 H 0.11 2.31 5.89 -51.93 -0.31 2.00 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.40 5.75 6.64 -40.82 -0.27 5.48 16 34 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.06 0.57 7.56 -51.93 -0.39 0.18 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.60 7.56 -51.93 -0.39 0.20 16 43 H 0.03 0.80 4.84 -51.92 -0.25 0.55 16 44 H 0.04 0.97 7.52 -51.93 -0.39 0.58 16 45 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.10 1.89 8.07 -51.93 -0.42 1.47 16 47 H 0.09 1.52 7.40 -51.92 -0.38 1.14 16 48 H 0.14 1.95 7.81 -52.49 -0.41 1.54 16 49 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 50 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 51 H 0.15 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 414.32 15.07 6.24 6.24 Total: -1.00 -31.20 414.32 -7.93 -39.12 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -8.14 Total: 11.02 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -1.52 Total: 5.05 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.02 Total: -56.16 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: 0.17 Total: -21.30 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.20 -7.93 -39.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349432549.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.152 kcal (2) G-P(sol) polarization free energy of solvation -31.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds