Wall clock time and date at job start Wed Apr 1 2020 05:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09010 * 109.46779 * 2 1 4 4 N 1.46503 * 109.47275 * 119.99551 * 2 1 3 5 5 C 1.34771 * 120.00163 * 275.00347 * 4 2 1 6 6 O 1.21285 * 120.00142 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99835 * 179.97438 * 5 4 2 8 8 C 1.53004 * 109.46906 * 179.97438 * 7 5 4 9 9 C 1.52992 * 109.47287 * 299.99948 * 7 5 4 10 10 C 1.52998 * 109.47050 * 59.99965 * 7 5 4 11 11 C 1.50699 * 109.47323 * 240.00152 * 2 1 3 12 12 O 1.21282 * 119.99513 * 266.75550 * 11 2 1 13 13 N 1.34777 * 120.00172 * 86.75626 * 11 2 1 14 14 C 1.46490 * 120.00006 * 5.14585 * 13 11 2 15 15 C 1.50703 * 109.47738 * 266.94359 * 14 13 11 16 16 H 1.07997 * 119.99381 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00196 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00002 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00158 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47104 * 89.99783 * 19 17 15 21 21 H 1.48501 * 109.47298 * 210.00281 * 19 17 15 22 22 H 1.48504 * 109.46923 * 329.99879 * 19 17 15 23 23 C 1.46503 * 119.99905 * 185.15504 * 13 11 2 24 24 C 1.50699 * 109.46586 * 269.99879 * 23 13 11 25 25 C 1.38230 * 119.61992 * 94.97948 * 24 23 13 26 26 C 1.38630 * 119.15838 * 179.78381 * 25 24 23 27 27 C 1.38675 * 118.42349 * 0.47660 * 26 25 24 28 28 C 1.38180 * 119.15926 * 359.50107 * 27 26 25 29 29 N 1.31856 * 119.61791 * 274.99575 * 24 23 13 30 30 H 1.09003 * 109.47119 * 60.38307 * 1 2 3 31 31 H 1.09000 * 109.47071 * 180.38563 * 1 2 3 32 32 H 1.09000 * 109.47466 * 300.38700 * 1 2 3 33 33 H 0.97003 * 119.99563 * 95.00506 * 4 2 1 34 34 H 1.08993 * 109.46913 * 60.00039 * 8 7 5 35 35 H 1.09003 * 109.46710 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47064 * 299.99911 * 8 7 5 37 37 H 1.08998 * 109.47224 * 59.99989 * 9 7 5 38 38 H 1.08995 * 109.47537 * 180.02562 * 9 7 5 39 39 H 1.09001 * 109.47371 * 300.00231 * 9 7 5 40 40 H 1.09004 * 109.47214 * 60.00302 * 10 7 5 41 41 H 1.08994 * 109.47184 * 179.97438 * 10 7 5 42 42 H 1.08999 * 109.47521 * 300.00086 * 10 7 5 43 43 H 1.09007 * 109.47295 * 26.94836 * 14 13 11 44 44 H 1.09006 * 109.47293 * 146.94266 * 14 13 11 45 45 H 0.96997 * 119.99971 * 179.97438 * 18 17 15 46 46 H 1.08994 * 109.47153 * 150.00015 * 23 13 11 47 47 H 1.09008 * 109.47190 * 29.99415 * 23 13 11 48 48 H 1.07995 * 120.41704 * 359.97438 * 25 24 23 49 49 H 1.08004 * 120.78784 * 180.22705 * 26 25 24 50 50 H 1.07995 * 120.42091 * 179.77631 * 27 26 25 51 51 H 1.08003 * 119.61509 * 180.25206 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8589 1.1587 2.4115 7 6 2.6488 -0.7287 3.5878 8 6 2.7010 0.2547 4.7588 9 6 1.7044 -1.8822 3.9315 10 6 4.0513 -1.2796 3.3223 11 6 2.0323 -0.7104 -1.2305 12 8 2.2905 -1.8945 -1.1840 13 7 2.1947 -0.0298 -2.3824 14 6 1.9916 1.4206 -2.4111 15 6 0.5683 1.7210 -2.8050 16 1 -0.1163 0.9122 -3.0136 17 6 0.1406 3.0283 -2.9002 18 7 -1.1017 3.2903 -3.2435 19 14 1.3254 4.4272 -2.5416 20 1 2.0173 4.8234 -3.7944 21 1 0.5721 5.5884 -2.0036 22 1 2.3289 3.9819 -1.5415 23 6 2.5742 -0.7407 -3.6059 24 6 4.0765 -0.7863 -3.7148 25 6 4.7620 -1.8928 -3.2496 26 6 6.1436 -1.9266 -3.3587 27 6 6.7878 -0.8370 -3.9250 28 6 6.0358 0.2342 -4.3682 29 7 4.7220 0.2300 -4.2525 30 1 -0.3633 0.5079 -0.8934 31 1 -0.3633 -1.0276 0.0069 32 1 -0.3634 0.5198 0.8865 33 1 2.2491 -1.6317 1.1527 34 1 1.7021 0.6476 4.9480 35 1 3.0644 -0.2591 5.6487 36 1 3.3741 1.0762 4.5136 37 1 1.6676 -2.5826 3.0971 38 1 2.0671 -2.3958 4.8218 39 1 0.7052 -1.4897 4.1206 40 1 4.7242 -0.4578 3.0775 41 1 4.4144 -1.7931 4.2124 42 1 4.0146 -1.9800 2.4879 43 1 2.1902 1.8350 -1.4226 44 1 2.6714 1.8685 -3.1360 45 1 -1.4027 4.2100 -3.3101 46 1 2.1628 -0.2205 -4.4708 47 1 2.1814 -1.7570 -3.5723 48 1 4.2277 -2.7218 -2.8096 49 1 6.7052 -2.7795 -3.0072 50 1 7.8633 -0.8276 -4.0226 51 1 6.5296 1.0849 -4.8142 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349432549.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:11 Heat of formation + Delta-G solvation = -64.058151 kcal Electronic energy + Delta-G solvation = -32078.142254 eV Core-core repulsion = 27976.517704 eV Total energy + Delta-G solvation = -4101.624550 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.83017 -41.15719 -40.36973 -37.07189 -36.71522 -36.14095 -34.67757 -33.42586 -33.00686 -31.48397 -29.99947 -28.23410 -28.04100 -27.98330 -25.63999 -24.68938 -24.26422 -23.73925 -22.63467 -20.87620 -19.96983 -19.14665 -18.32814 -18.04231 -17.67153 -17.35803 -16.90837 -16.67137 -16.54731 -16.26607 -16.16829 -15.63673 -15.41761 -14.90924 -14.79142 -14.67793 -14.55543 -14.30715 -14.18742 -14.02083 -13.81278 -13.45030 -13.40042 -13.29676 -13.11335 -13.05662 -12.88232 -12.81576 -12.69795 -12.63702 -12.62349 -12.44157 -12.05784 -11.91779 -11.87203 -11.69677 -11.00093 -10.80952 -10.76161 -10.73997 -10.41856 -10.24508 -9.95502 -9.58243 -8.31994 -6.35536 0.11851 0.39128 1.33042 1.36076 1.42000 1.42930 1.59326 1.81229 2.30243 2.36355 2.96332 3.02126 3.31837 3.45203 3.56974 3.80902 3.83397 3.91286 3.99773 4.02959 4.14403 4.18693 4.25813 4.27612 4.44464 4.56855 4.61025 4.68944 4.70627 4.72362 4.76590 4.77273 4.81953 4.86987 4.90102 4.93800 4.94358 5.00966 5.16765 5.22455 5.23474 5.27111 5.31887 5.33500 5.36566 5.40118 5.50199 5.81034 6.11540 6.44043 6.47962 6.67207 7.01278 7.10051 7.18865 7.28512 8.83005 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007057 B = 0.004870 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3966.532182 B = 5747.777496 C = 8276.902678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.133 3.867 3 H 0.087 0.913 4 N -0.703 5.703 5 C 0.514 3.486 6 O -0.582 6.582 7 C -0.080 4.080 8 C -0.125 4.125 9 C -0.138 4.138 10 C -0.137 4.137 11 C 0.521 3.479 12 O -0.562 6.562 13 N -0.577 5.577 14 C 0.218 3.782 15 C -0.526 4.526 16 H 0.051 0.949 17 C 0.033 3.967 18 N -0.931 5.931 19 Si 0.921 3.079 20 H -0.263 1.263 21 H -0.283 1.283 22 H -0.258 1.258 23 C 0.168 3.832 24 C 0.093 3.907 25 C -0.156 4.156 26 C -0.078 4.078 27 C -0.164 4.164 28 C 0.079 3.921 29 N -0.507 5.507 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.414 0.586 34 H 0.047 0.953 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.031 0.969 44 H 0.040 0.960 45 H 0.268 0.732 46 H 0.085 0.915 47 H 0.100 0.900 48 H 0.139 0.861 49 H 0.166 0.834 50 H 0.171 0.829 51 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.969 -13.425 9.304 22.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.025 3.975 3 H 0.104 0.896 4 N -0.357 5.357 5 C 0.302 3.698 6 O -0.462 6.462 7 C -0.083 4.083 8 C -0.183 4.183 9 C -0.195 4.195 10 C -0.195 4.195 11 C 0.308 3.692 12 O -0.443 6.443 13 N -0.306 5.306 14 C 0.096 3.904 15 C -0.564 4.564 16 H 0.069 0.931 17 C -0.167 4.167 18 N -0.570 5.570 19 Si 0.746 3.254 20 H -0.187 1.187 21 H -0.208 1.208 22 H -0.182 1.182 23 C 0.045 3.955 24 C -0.045 4.045 25 C -0.176 4.176 26 C -0.104 4.104 27 C -0.183 4.183 28 C -0.079 4.079 29 N -0.217 5.217 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.253 0.747 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.115 0.885 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.116 0.884 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.104 0.896 47 H 0.118 0.882 48 H 0.157 0.843 49 H 0.184 0.816 50 H 0.188 0.812 51 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 15.277 -12.333 8.991 21.595 hybrid contribution 0.206 0.344 -0.170 0.436 sum 15.483 -11.989 8.821 21.478 Atomic orbital electron populations 1.21967 0.92185 1.02578 1.03688 1.20595 0.96394 0.96900 0.83628 0.89563 1.45832 1.66821 1.14841 1.08185 1.21517 0.76222 0.86826 0.85198 1.90697 1.51722 1.18144 1.85611 1.20886 0.98526 0.97398 0.91477 1.21673 1.02023 0.97978 0.96609 1.21886 0.98062 0.95861 1.03684 1.21884 0.92671 1.00992 1.03937 1.20453 0.76844 0.86935 0.84932 1.90546 1.53230 1.15414 1.85108 1.47772 1.65338 1.09267 1.08221 1.19663 0.96239 0.76990 0.97492 1.21336 0.95337 0.92907 1.46861 0.93078 1.25476 0.96190 1.00845 0.94187 1.69988 1.17531 1.20692 1.48804 0.86106 0.79909 0.79810 0.79622 1.18746 1.20812 1.18227 1.20232 0.89108 0.98638 0.87533 1.21554 0.96655 0.90723 0.95562 1.22173 0.96148 0.99331 0.99976 1.21995 0.93575 0.99363 0.95472 1.22526 1.02969 0.93977 0.98856 1.23262 0.88796 0.99214 0.96591 1.67467 1.11934 1.27647 1.14687 0.90636 0.91370 0.92170 0.74723 0.93366 0.88817 0.93578 0.91513 0.88502 0.92919 0.93299 0.88385 0.91704 0.95099 0.94223 0.92280 0.89634 0.88219 0.84310 0.81623 0.81201 0.80895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.71 9.47 71.98 0.68 -5.03 16 2 C 0.13 5.12 2.39 44.24 0.11 5.22 16 3 H 0.09 3.81 5.31 -2.38 -0.01 3.80 16 4 N -0.70 -22.05 4.84 -446.09 -2.16 -24.21 16 5 C 0.51 16.23 6.45 87.66 0.56 16.79 16 6 O -0.58 -23.79 15.64 -3.04 -0.05 -23.84 16 7 C -0.08 -1.69 0.87 -52.93 -0.05 -1.73 16 8 C -0.13 -2.58 7.76 71.98 0.56 -2.03 16 9 C -0.14 -2.22 8.37 71.98 0.60 -1.62 16 10 C -0.14 -2.29 8.37 71.98 0.60 -1.69 16 11 C 0.52 20.26 6.86 87.66 0.60 20.86 16 12 O -0.56 -21.05 15.42 -3.04 -0.05 -21.10 16 13 N -0.58 -23.62 2.44 -830.49 -2.03 -25.65 16 14 C 0.22 10.13 4.05 85.64 0.35 10.48 16 15 C -0.53 -28.19 8.20 25.60 0.21 -27.99 16 16 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 17 C 0.03 1.85 5.47 84.65 0.46 2.31 16 18 N -0.93 -55.63 13.96 21.45 0.30 -55.33 16 19 Si 0.92 43.59 27.47 68.60 1.88 45.48 16 20 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.26 -11.85 6.54 99.48 0.65 -11.20 16 23 C 0.17 6.17 5.69 85.63 0.49 6.66 16 24 C 0.09 3.08 6.36 42.55 0.27 3.35 16 25 C -0.16 -4.23 9.72 22.36 0.22 -4.02 16 26 C -0.08 -1.59 10.18 22.47 0.23 -1.36 16 27 C -0.16 -3.13 10.11 22.36 0.23 -2.90 16 28 C 0.08 1.97 11.18 84.67 0.95 2.92 16 29 N -0.51 -17.08 10.27 -183.88 -1.89 -18.97 16 30 H 0.07 3.46 5.89 -2.39 -0.01 3.44 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.41 11.23 6.64 -92.71 -0.62 10.62 16 34 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 37 H 0.07 1.03 7.56 -2.39 -0.02 1.01 16 38 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 1.05 7.56 -2.39 -0.02 1.03 16 43 H 0.03 1.48 4.84 -2.38 -0.01 1.47 16 44 H 0.04 1.88 7.52 -2.38 -0.02 1.86 16 45 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 46 H 0.09 3.34 8.07 -2.39 -0.02 3.32 16 47 H 0.10 3.39 7.40 -2.38 -0.02 3.37 16 48 H 0.14 3.68 7.81 -2.91 -0.02 3.66 16 49 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 50 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 51 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -71.46 414.32 3.34 -68.12 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: 0.26 Total: 35.25 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: 7.07 Total: 20.24 kcal Atomic # 7 Polarization: -118.38 SS G_CDS: -5.77 Total: -124.15 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -0.09 Total: -44.94 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.48 kcal Total: -71.46 3.34 -68.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349432549.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.063 kcal (2) G-P(sol) polarization free energy of solvation -71.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds