Wall clock time and date at job start Wed Apr 1 2020 05:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46784 * 2 1 4 4 N 1.46499 * 109.47168 * 239.99804 * 2 1 3 5 5 C 1.34781 * 119.99730 * 85.00215 * 4 2 1 6 6 O 1.21284 * 120.00128 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99772 * 180.02562 * 5 4 2 8 8 C 1.52993 * 109.46916 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47197 * 299.99835 * 7 5 4 10 10 C 1.53006 * 109.46916 * 59.99862 * 7 5 4 11 11 C 1.50707 * 109.47098 * 119.99572 * 2 1 3 12 12 O 1.21278 * 119.99374 * 114.08360 * 11 2 1 13 13 N 1.34767 * 120.00016 * 294.08828 * 11 2 1 14 14 C 1.46502 * 120.00498 * 355.29451 * 13 11 2 15 15 C 1.50701 * 109.46828 * 263.37239 * 14 13 11 16 16 H 1.07994 * 120.00415 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99795 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00203 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99589 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46950 * 90.00642 * 19 17 15 21 21 H 1.48501 * 109.46750 * 209.99935 * 19 17 15 22 22 H 1.48495 * 109.47703 * 329.99964 * 19 17 15 23 23 C 1.46499 * 119.99677 * 175.29498 * 13 11 2 24 24 C 1.50703 * 109.47351 * 89.99958 * 23 13 11 25 25 C 1.38227 * 119.61833 * 95.01681 * 24 23 13 26 26 C 1.38630 * 119.15955 * 179.74882 * 25 24 23 27 27 C 1.38671 * 118.41914 * 0.47525 * 26 25 24 28 28 C 1.38180 * 119.16417 * 359.50909 * 27 26 25 29 29 N 1.31851 * 119.61970 * 275.00288 * 24 23 13 30 30 H 1.09000 * 109.47238 * 51.69682 * 1 2 3 31 31 H 1.08992 * 109.47100 * 171.70170 * 1 2 3 32 32 H 1.09002 * 109.46752 * 291.69557 * 1 2 3 33 33 H 0.96996 * 119.99725 * 265.00006 * 4 2 1 34 34 H 1.08998 * 109.47782 * 60.00114 * 8 7 5 35 35 H 1.09009 * 109.47007 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.47420 * 299.99537 * 8 7 5 37 37 H 1.09000 * 109.46704 * 59.99967 * 9 7 5 38 38 H 1.08997 * 109.47198 * 180.02562 * 9 7 5 39 39 H 1.09002 * 109.46897 * 300.00324 * 9 7 5 40 40 H 1.08996 * 109.47302 * 60.00184 * 10 7 5 41 41 H 1.09007 * 109.46753 * 180.02562 * 10 7 5 42 42 H 1.09001 * 109.47039 * 299.99581 * 10 7 5 43 43 H 1.09001 * 109.46497 * 23.37060 * 14 13 11 44 44 H 1.08997 * 109.47387 * 143.37255 * 14 13 11 45 45 H 0.97004 * 120.00393 * 179.97438 * 18 17 15 46 46 H 1.09001 * 109.47390 * 329.99978 * 23 13 11 47 47 H 1.09005 * 109.47098 * 209.99740 * 23 13 11 48 48 H 1.07997 * 120.42337 * 359.96281 * 25 24 23 49 49 H 1.08004 * 120.78805 * 180.23616 * 26 25 24 50 50 H 1.08003 * 120.41783 * 179.78099 * 27 26 25 51 51 H 1.08002 * 119.61359 * 180.25389 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8582 1.1584 -2.4117 7 6 2.6489 -0.7288 -3.5877 8 6 2.6999 0.2542 -4.7590 9 6 4.0513 -1.2798 -3.3222 10 6 1.7043 -1.8824 -3.9313 11 6 2.0324 -0.7104 1.2306 12 8 2.6386 -1.7552 1.1225 13 7 1.8079 -0.1846 2.4510 14 6 1.1671 1.1269 2.5771 15 6 2.2237 2.1877 2.7487 16 1 3.2679 1.9125 2.7627 17 6 1.8572 3.5096 2.8876 18 7 2.7791 4.4354 3.0368 19 14 0.0510 3.9855 2.8625 20 1 -0.4899 3.9485 4.2450 21 1 -0.0918 5.3572 2.3118 22 1 -0.7012 3.0295 2.0109 23 6 2.2046 -0.9245 3.6515 24 6 3.6155 -0.5519 4.0279 25 6 3.8331 0.4397 4.9660 26 6 5.1348 0.7711 5.3090 27 6 6.1737 0.0966 4.6856 28 6 5.8790 -0.8836 3.7573 29 7 4.6281 -1.1759 3.4589 30 1 -0.3634 0.6370 -0.8064 31 1 -0.3633 -1.0168 -0.1483 32 1 -0.3633 0.3799 0.9549 33 1 2.2490 -1.6318 -1.1525 34 1 3.3726 1.0762 -4.5145 35 1 3.0624 -0.2599 -5.6492 36 1 1.7006 0.6463 -4.9480 37 1 4.0145 -1.9802 -2.4878 38 1 4.4144 -1.7934 -4.2124 39 1 4.7242 -0.4580 -3.0773 40 1 0.7052 -1.4898 -4.1205 41 1 2.0675 -2.3966 -4.8212 42 1 1.6676 -2.5828 -3.0969 43 1 0.5857 1.3349 1.6789 44 1 0.5077 1.1271 3.4450 45 1 2.5213 5.3655 3.1342 46 1 2.1523 -1.9949 3.4526 47 1 1.5316 -0.6740 4.4716 48 1 2.9996 0.9475 5.4284 49 1 5.3349 1.5392 6.0415 50 1 7.2001 0.3314 4.9258 51 1 6.6825 -1.4164 3.2704 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349432555.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:15 Heat of formation + Delta-G solvation = -36.492934 kcal Electronic energy + Delta-G solvation = -32290.365996 eV Core-core repulsion = 28189.936764 eV Total energy + Delta-G solvation = -4100.429232 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.35925 -39.73171 -38.84945 -35.63840 -35.39174 -34.67431 -32.68625 -31.94638 -31.53637 -30.08557 -28.20738 -27.41924 -27.12700 -26.32089 -24.39474 -22.99416 -22.73384 -22.12279 -21.23131 -19.49803 -18.66386 -17.12658 -16.93716 -16.49277 -16.14294 -15.88318 -15.37887 -15.26179 -15.12954 -14.98606 -14.34276 -14.23799 -14.00799 -13.84905 -13.46399 -13.23977 -12.96171 -12.86965 -12.64483 -12.61794 -12.40734 -12.32291 -12.25907 -12.06395 -11.87735 -11.75463 -11.72088 -11.43423 -11.26905 -11.21678 -10.98758 -10.96804 -10.88935 -10.66333 -10.22635 -9.64121 -9.45246 -9.34245 -9.20225 -8.92217 -8.79528 -8.72387 -8.42764 -7.85747 -6.20558 -4.22018 1.59358 1.86202 2.87252 3.16219 3.17133 3.24480 3.24824 3.29407 3.82730 4.26553 4.45246 4.64756 4.73748 4.78297 4.83957 4.99281 5.10853 5.22945 5.26271 5.30268 5.45360 5.48168 5.53806 5.54789 5.58739 5.64971 5.66023 5.75354 5.81700 5.82949 5.87737 5.90345 5.96425 6.01956 6.16631 6.17547 6.20789 6.26438 6.28035 6.30072 6.41049 6.56312 6.63328 6.71804 6.73393 7.19124 7.22322 7.42291 7.79174 7.99087 8.36953 8.50226 8.57154 8.73653 8.88181 9.37904 10.91659 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008829 B = 0.004370 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.431051 B = 6405.056328 C = 8116.706686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.125 3.875 3 H 0.123 0.877 4 N -0.708 5.708 5 C 0.522 3.478 6 O -0.536 6.536 7 C -0.085 4.085 8 C -0.126 4.126 9 C -0.142 4.142 10 C -0.139 4.139 11 C 0.518 3.482 12 O -0.544 6.544 13 N -0.581 5.581 14 C 0.191 3.809 15 C -0.538 4.538 16 H 0.080 0.920 17 C 0.079 3.921 18 N -0.887 5.887 19 Si 0.867 3.133 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.263 1.263 23 C 0.175 3.825 24 C 0.118 3.882 25 C -0.122 4.122 26 C -0.080 4.080 27 C -0.178 4.178 28 C 0.084 3.916 29 N -0.461 5.461 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.405 0.595 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.030 0.970 45 H 0.266 0.734 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.135 0.865 49 H 0.128 0.872 50 H 0.125 0.875 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.784 -11.800 -4.706 12.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.017 3.983 3 H 0.141 0.859 4 N -0.361 5.361 5 C 0.307 3.693 6 O -0.413 6.413 7 C -0.088 4.088 8 C -0.184 4.184 9 C -0.199 4.199 10 C -0.197 4.197 11 C 0.305 3.695 12 O -0.422 6.422 13 N -0.312 5.312 14 C 0.070 3.930 15 C -0.576 4.576 16 H 0.098 0.902 17 C -0.125 4.125 18 N -0.525 5.525 19 Si 0.693 3.307 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.187 1.187 23 C 0.051 3.949 24 C -0.022 4.022 25 C -0.143 4.143 26 C -0.106 4.106 27 C -0.198 4.198 28 C -0.074 4.074 29 N -0.170 5.170 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.242 0.758 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.076 0.924 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.153 0.847 49 H 0.146 0.854 50 H 0.143 0.857 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.845 -11.939 -5.374 13.120 hybrid contribution -0.371 1.128 0.798 1.431 sum -1.216 -10.811 -4.575 11.802 Atomic orbital electron populations 1.22303 0.93524 1.02322 1.04059 1.20758 0.95198 0.99033 0.83318 0.85943 1.45773 1.67134 1.14572 1.08663 1.20525 0.77334 0.87124 0.84297 1.90718 1.49739 1.15829 1.84966 1.20791 0.97163 0.96914 0.93944 1.21653 1.03031 0.98257 0.95459 1.21874 0.94277 1.01439 1.02319 1.21863 0.98925 0.96750 1.02162 1.20318 0.79333 0.85089 0.84795 1.90639 1.41179 1.24151 1.86208 1.47763 1.58965 1.20480 1.03975 1.20249 0.94400 0.80001 0.98300 1.21329 0.94570 0.90248 1.51468 0.90197 1.24844 0.97049 0.96290 0.94277 1.69880 1.32911 1.01169 1.48491 0.86995 0.86017 0.78852 0.78797 1.20020 1.20893 1.18744 1.20110 0.89636 0.97265 0.87889 1.21494 0.95448 0.92955 0.92254 1.21939 0.97831 0.96434 0.98062 1.21480 0.92783 0.97710 0.98590 1.22025 0.99861 0.98568 0.99321 1.22577 0.93836 0.95681 0.95267 1.67511 0.99340 1.27117 1.23007 0.91267 0.92350 0.89836 0.75786 0.91834 0.92241 0.91984 0.91765 0.91555 0.91954 0.92099 0.91506 0.92023 0.93138 0.95228 0.92431 0.89265 0.89326 0.84699 0.85421 0.85714 0.83752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 8.98 37.16 0.33 -2.29 16 2 C 0.12 2.32 2.15 -69.08 -0.15 2.17 16 3 H 0.12 2.71 7.14 -51.93 -0.37 2.34 16 4 N -0.71 -11.55 4.77 -54.93 -0.26 -11.81 16 5 C 0.52 8.57 6.45 -10.98 -0.07 8.50 16 6 O -0.54 -10.93 15.65 5.55 0.09 -10.84 16 7 C -0.08 -1.03 0.87 -155.66 -0.14 -1.17 16 8 C -0.13 -1.48 7.76 37.15 0.29 -1.19 16 9 C -0.14 -1.57 8.37 37.16 0.31 -1.26 16 10 C -0.14 -1.35 8.37 37.16 0.31 -1.03 16 11 C 0.52 10.24 7.04 -10.99 -0.08 10.16 16 12 O -0.54 -11.36 15.45 5.56 0.09 -11.27 16 13 N -0.58 -11.39 2.46 -176.43 -0.43 -11.82 16 14 C 0.19 4.02 3.58 -5.19 -0.02 4.00 16 15 C -0.54 -13.71 9.07 -34.44 -0.31 -14.02 16 16 H 0.08 2.34 7.05 -52.49 -0.37 1.97 16 17 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 18 N -0.89 -25.52 13.96 55.43 0.77 -24.75 16 19 Si 0.87 19.59 27.47 -169.99 -4.67 14.92 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16 23 C 0.17 3.10 5.71 -5.19 -0.03 3.07 16 24 C 0.12 2.25 5.76 -82.59 -0.48 1.77 16 25 C -0.12 -2.23 8.47 -39.44 -0.33 -2.57 16 26 C -0.08 -1.33 10.18 -39.28 -0.40 -1.73 16 27 C -0.18 -2.79 10.11 -39.44 -0.40 -3.19 16 28 C 0.08 1.43 11.18 -17.55 -0.20 1.23 16 29 N -0.46 -9.08 10.27 -9.47 -0.10 -9.18 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.35 5.42 -51.93 -0.28 1.06 16 33 H 0.41 6.05 6.57 -40.82 -0.27 5.78 16 34 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 35 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 37 H 0.06 0.72 7.56 -51.93 -0.39 0.33 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.57 7.56 -51.93 -0.39 0.18 16 43 H 0.05 1.06 3.15 -51.93 -0.16 0.89 16 44 H 0.03 0.59 7.42 -51.93 -0.39 0.20 16 45 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.09 1.55 7.49 -51.93 -0.39 1.16 16 47 H 0.09 1.32 7.86 -51.93 -0.41 0.92 16 48 H 0.14 2.39 8.06 -52.49 -0.42 1.96 16 49 H 0.13 1.86 8.06 -52.48 -0.42 1.44 16 50 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 51 H 0.15 2.05 8.06 -52.49 -0.42 1.62 16 LS Contribution 411.24 15.07 6.20 6.20 Total: -1.00 -32.65 411.24 -7.85 -40.50 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -8.08 Total: 13.60 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -1.45 Total: 4.46 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.02 Total: -57.56 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: 0.17 Total: -22.12 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.67 Total: 14.92 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.65 -7.85 -40.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349432555.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.005 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds