Wall clock time and date at job start Wed Apr 1 2020 05:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46784 * 2 1 4 4 N 1.46499 * 109.47168 * 239.99804 * 2 1 3 5 5 C 1.34781 * 119.99730 * 85.00215 * 4 2 1 6 6 O 1.21284 * 120.00128 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99772 * 180.02562 * 5 4 2 8 8 C 1.52993 * 109.46916 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47197 * 299.99835 * 7 5 4 10 10 C 1.53006 * 109.46916 * 59.99862 * 7 5 4 11 11 C 1.50707 * 109.47098 * 119.99572 * 2 1 3 12 12 O 1.21278 * 119.99374 * 114.08360 * 11 2 1 13 13 N 1.34767 * 120.00016 * 294.08828 * 11 2 1 14 14 C 1.46502 * 120.00498 * 355.29451 * 13 11 2 15 15 C 1.50701 * 109.46828 * 263.37239 * 14 13 11 16 16 H 1.07994 * 120.00415 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99795 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00203 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99589 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46950 * 90.00642 * 19 17 15 21 21 H 1.48501 * 109.46750 * 209.99935 * 19 17 15 22 22 H 1.48495 * 109.47703 * 329.99964 * 19 17 15 23 23 C 1.46499 * 119.99677 * 175.29498 * 13 11 2 24 24 C 1.50703 * 109.47351 * 89.99958 * 23 13 11 25 25 C 1.38227 * 119.61833 * 95.01681 * 24 23 13 26 26 C 1.38630 * 119.15955 * 179.74882 * 25 24 23 27 27 C 1.38671 * 118.41914 * 0.47525 * 26 25 24 28 28 C 1.38180 * 119.16417 * 359.50909 * 27 26 25 29 29 N 1.31851 * 119.61970 * 275.00288 * 24 23 13 30 30 H 1.09000 * 109.47238 * 51.69682 * 1 2 3 31 31 H 1.08992 * 109.47100 * 171.70170 * 1 2 3 32 32 H 1.09002 * 109.46752 * 291.69557 * 1 2 3 33 33 H 0.96996 * 119.99725 * 265.00006 * 4 2 1 34 34 H 1.08998 * 109.47782 * 60.00114 * 8 7 5 35 35 H 1.09009 * 109.47007 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.47420 * 299.99537 * 8 7 5 37 37 H 1.09000 * 109.46704 * 59.99967 * 9 7 5 38 38 H 1.08997 * 109.47198 * 180.02562 * 9 7 5 39 39 H 1.09002 * 109.46897 * 300.00324 * 9 7 5 40 40 H 1.08996 * 109.47302 * 60.00184 * 10 7 5 41 41 H 1.09007 * 109.46753 * 180.02562 * 10 7 5 42 42 H 1.09001 * 109.47039 * 299.99581 * 10 7 5 43 43 H 1.09001 * 109.46497 * 23.37060 * 14 13 11 44 44 H 1.08997 * 109.47387 * 143.37255 * 14 13 11 45 45 H 0.97004 * 120.00393 * 179.97438 * 18 17 15 46 46 H 1.09001 * 109.47390 * 329.99978 * 23 13 11 47 47 H 1.09005 * 109.47098 * 209.99740 * 23 13 11 48 48 H 1.07997 * 120.42337 * 359.96281 * 25 24 23 49 49 H 1.08004 * 120.78805 * 180.23616 * 26 25 24 50 50 H 1.08003 * 120.41783 * 179.78099 * 27 26 25 51 51 H 1.08002 * 119.61359 * 180.25389 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8582 1.1584 -2.4117 7 6 2.6489 -0.7288 -3.5877 8 6 2.6999 0.2542 -4.7590 9 6 4.0513 -1.2798 -3.3222 10 6 1.7043 -1.8824 -3.9313 11 6 2.0324 -0.7104 1.2306 12 8 2.6386 -1.7552 1.1225 13 7 1.8079 -0.1846 2.4510 14 6 1.1671 1.1269 2.5771 15 6 2.2237 2.1877 2.7487 16 1 3.2679 1.9125 2.7627 17 6 1.8572 3.5096 2.8876 18 7 2.7791 4.4354 3.0368 19 14 0.0510 3.9855 2.8625 20 1 -0.4899 3.9485 4.2450 21 1 -0.0918 5.3572 2.3118 22 1 -0.7012 3.0295 2.0109 23 6 2.2046 -0.9245 3.6515 24 6 3.6155 -0.5519 4.0279 25 6 3.8331 0.4397 4.9660 26 6 5.1348 0.7711 5.3090 27 6 6.1737 0.0966 4.6856 28 6 5.8790 -0.8836 3.7573 29 7 4.6281 -1.1759 3.4589 30 1 -0.3634 0.6370 -0.8064 31 1 -0.3633 -1.0168 -0.1483 32 1 -0.3633 0.3799 0.9549 33 1 2.2490 -1.6318 -1.1525 34 1 3.3726 1.0762 -4.5145 35 1 3.0624 -0.2599 -5.6492 36 1 1.7006 0.6463 -4.9480 37 1 4.0145 -1.9802 -2.4878 38 1 4.4144 -1.7934 -4.2124 39 1 4.7242 -0.4580 -3.0773 40 1 0.7052 -1.4898 -4.1205 41 1 2.0675 -2.3966 -4.8212 42 1 1.6676 -2.5828 -3.0969 43 1 0.5857 1.3349 1.6789 44 1 0.5077 1.1271 3.4450 45 1 2.5213 5.3655 3.1342 46 1 2.1523 -1.9949 3.4526 47 1 1.5316 -0.6740 4.4716 48 1 2.9996 0.9475 5.4284 49 1 5.3349 1.5392 6.0415 50 1 7.2001 0.3314 4.9258 51 1 6.6825 -1.4164 3.2704 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349432555.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:14 Heat of formation + Delta-G solvation = -57.915309 kcal Electronic energy + Delta-G solvation = -32291.294940 eV Core-core repulsion = 28189.936764 eV Total energy + Delta-G solvation = -4101.358176 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.77845 -41.07856 -40.29030 -37.02204 -36.71413 -36.13183 -34.59464 -33.38061 -32.94339 -31.44484 -30.01482 -28.23808 -28.04946 -27.76141 -25.79895 -24.49722 -24.22291 -23.59780 -22.58268 -20.86847 -20.08690 -19.07059 -18.22783 -17.97128 -17.54312 -17.28067 -16.82517 -16.76959 -16.48545 -16.24983 -15.99556 -15.66615 -15.38957 -14.82780 -14.71982 -14.70500 -14.55517 -14.20146 -14.09597 -13.99517 -13.95692 -13.55281 -13.33608 -13.20880 -13.10086 -13.01609 -12.87984 -12.73175 -12.67249 -12.64374 -12.49405 -12.32664 -11.92405 -11.91111 -11.87461 -11.62981 -10.89690 -10.76435 -10.69893 -10.64767 -10.34281 -10.21359 -9.83833 -9.46896 -8.25174 -6.30193 0.23271 0.48863 1.38180 1.42837 1.48960 1.51813 1.65912 1.88887 2.36016 2.40303 3.04345 3.09718 3.41301 3.50873 3.59296 3.82829 3.89997 3.91763 4.04868 4.05575 4.16321 4.26281 4.27939 4.32551 4.50274 4.52784 4.58075 4.68524 4.71428 4.73276 4.78965 4.81529 4.81754 4.83140 4.92789 4.93885 4.94156 5.00620 5.09936 5.18440 5.27385 5.30805 5.32532 5.36680 5.37789 5.49474 5.62084 5.88718 6.18631 6.49335 6.53401 6.75328 7.13421 7.18976 7.21510 7.34520 8.90471 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008829 B = 0.004370 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.431051 B = 6405.056328 C = 8116.706686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.080 0.920 4 N -0.702 5.702 5 C 0.514 3.486 6 O -0.583 6.583 7 C -0.080 4.080 8 C -0.125 4.125 9 C -0.139 4.139 10 C -0.135 4.135 11 C 0.516 3.484 12 O -0.556 6.556 13 N -0.581 5.581 14 C 0.197 3.803 15 C -0.525 4.525 16 H 0.032 0.968 17 C 0.022 3.978 18 N -0.941 5.941 19 Si 0.928 3.072 20 H -0.256 1.256 21 H -0.296 1.296 22 H -0.237 1.237 23 C 0.171 3.829 24 C 0.099 3.901 25 C -0.139 4.139 26 C -0.091 4.091 27 C -0.172 4.172 28 C 0.070 3.930 29 N -0.492 5.492 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.414 0.586 34 H 0.040 0.960 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.098 0.902 39 H 0.041 0.959 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.264 0.736 46 H 0.092 0.908 47 H 0.116 0.884 48 H 0.134 0.866 49 H 0.147 0.853 50 H 0.161 0.839 51 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.945 -13.754 -5.311 14.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.018 3.982 3 H 0.098 0.902 4 N -0.355 5.355 5 C 0.302 3.698 6 O -0.462 6.462 7 C -0.083 4.083 8 C -0.182 4.182 9 C -0.196 4.196 10 C -0.192 4.192 11 C 0.303 3.697 12 O -0.435 6.435 13 N -0.311 5.311 14 C 0.076 3.924 15 C -0.564 4.564 16 H 0.050 0.950 17 C -0.177 4.177 18 N -0.581 5.581 19 Si 0.751 3.249 20 H -0.181 1.181 21 H -0.222 1.222 22 H -0.160 1.160 23 C 0.048 3.952 24 C -0.040 4.040 25 C -0.159 4.159 26 C -0.117 4.117 27 C -0.191 4.191 28 C -0.087 4.087 29 N -0.201 5.201 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.252 0.748 34 H 0.059 0.941 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.110 0.890 47 H 0.134 0.866 48 H 0.152 0.848 49 H 0.165 0.835 50 H 0.178 0.822 51 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.013 -13.955 -5.967 15.310 hybrid contribution 0.181 1.710 0.993 1.986 sum -1.832 -12.245 -4.974 13.343 Atomic orbital electron populations 1.22235 0.91242 1.03846 1.03974 1.20603 0.96985 0.96774 0.83799 0.90162 1.45764 1.66863 1.14812 1.08077 1.21464 0.76212 0.86757 0.85321 1.90691 1.51820 1.17993 1.85733 1.20878 0.98242 0.97585 0.91624 1.21669 1.02128 0.97870 0.96578 1.21887 0.93125 1.00812 1.03813 1.21871 0.98089 0.95636 1.03625 1.20530 0.79025 0.85004 0.85172 1.90621 1.41625 1.24820 1.86433 1.47758 1.58784 1.19935 1.04651 1.20137 0.93369 0.79387 0.99547 1.21415 0.93500 0.91508 1.49956 0.94966 1.25681 1.01723 0.96201 0.94097 1.70049 1.35495 1.01503 1.51029 0.86002 0.80582 0.78220 0.80056 1.18095 1.22211 1.15968 1.20338 0.89792 0.97166 0.87947 1.21680 0.95968 0.93539 0.92795 1.22055 0.98684 0.96681 0.98489 1.21852 0.92662 0.98162 0.99057 1.22400 1.01383 0.97308 0.98045 1.23114 0.93749 0.96235 0.95619 1.67507 1.00470 1.28216 1.23945 0.91598 0.89872 0.89648 0.74793 0.94068 0.88821 0.92900 0.91960 0.88279 0.93973 0.92347 0.88640 0.91523 0.92364 0.92599 0.92705 0.89009 0.86623 0.84830 0.83540 0.82170 0.81260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.76 8.98 71.98 0.65 -4.12 16 2 C 0.13 4.76 2.15 44.25 0.09 4.85 16 3 H 0.08 3.72 7.14 -2.38 -0.02 3.70 16 4 N -0.70 -22.89 4.77 -446.07 -2.13 -25.02 16 5 C 0.51 17.07 6.45 87.66 0.56 17.64 16 6 O -0.58 -24.64 15.65 -3.04 -0.05 -24.69 16 7 C -0.08 -1.85 0.87 -52.93 -0.05 -1.90 16 8 C -0.12 -2.80 7.76 71.98 0.56 -2.24 16 9 C -0.14 -2.87 8.37 71.98 0.60 -2.27 16 10 C -0.13 -2.23 8.37 71.98 0.60 -1.62 16 11 C 0.52 20.37 7.04 87.66 0.62 20.99 16 12 O -0.56 -23.12 15.45 -3.02 -0.05 -23.17 16 13 N -0.58 -22.58 2.46 -830.49 -2.04 -24.62 16 14 C 0.20 8.12 3.58 85.63 0.31 8.43 16 15 C -0.53 -27.33 9.07 25.60 0.23 -27.10 16 16 H 0.03 1.96 7.05 -2.91 -0.02 1.94 16 17 C 0.02 1.17 5.47 84.66 0.46 1.63 16 18 N -0.94 -56.04 13.96 21.45 0.30 -55.74 16 19 Si 0.93 39.96 27.47 68.60 1.88 41.84 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 21 H -0.30 -13.30 7.11 99.48 0.71 -12.60 16 22 H -0.24 -9.10 6.54 99.48 0.65 -8.45 16 23 C 0.17 5.97 5.71 85.63 0.49 6.46 16 24 C 0.10 3.81 5.76 42.55 0.24 4.05 16 25 C -0.14 -5.14 8.47 22.36 0.19 -4.95 16 26 C -0.09 -3.05 10.18 22.47 0.23 -2.82 16 27 C -0.17 -5.23 10.11 22.36 0.23 -5.00 16 28 C 0.07 2.36 11.18 84.67 0.95 3.30 16 29 N -0.49 -19.53 10.27 -183.89 -1.89 -21.42 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.09 2.58 5.42 -2.39 -0.01 2.57 16 33 H 0.41 12.06 6.57 -92.71 -0.61 11.46 16 34 H 0.04 1.09 8.10 -2.39 -0.02 1.07 16 35 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 37 H 0.06 1.31 7.56 -2.39 -0.02 1.29 16 38 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.07 1.04 7.56 -2.39 -0.02 1.03 16 43 H 0.06 2.36 3.15 -2.39 -0.01 2.36 16 44 H 0.06 2.06 7.42 -2.39 -0.02 2.04 16 45 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 46 H 0.09 3.13 7.49 -2.39 -0.02 3.12 16 47 H 0.12 3.30 7.86 -2.38 -0.02 3.28 16 48 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 49 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 50 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 51 H 0.17 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -74.95 411.24 3.27 -71.68 By element: Atomic # 1 Polarization: 45.53 SS G_CDS: 0.27 Total: 45.80 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 6.97 Total: 15.32 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -5.76 Total: -126.80 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -0.09 Total: -47.85 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 1.88 Total: 41.84 kcal Total: -74.95 3.27 -71.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349432555.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.770 kcal (2) G-P(sol) polarization free energy of solvation -74.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds