Wall clock time and date at job start Wed Apr 1 2020 04:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46821 * 2 1 4 4 C 1.52998 * 109.46966 * 119.99561 * 2 1 3 5 5 N 1.46494 * 109.47663 * 295.00537 * 4 2 1 6 6 S 1.65601 * 120.00121 * 165.00192 * 5 4 2 7 7 O 1.42100 * 104.27332 * 181.07142 * 6 5 4 8 8 O 1.42097 * 104.27590 * 308.92559 * 6 5 4 9 9 C 1.81398 * 104.45021 * 64.99836 * 6 5 4 10 10 C 1.53001 * 109.47010 * 180.02562 * 9 6 5 11 11 C 1.52995 * 109.47022 * 180.02562 * 10 9 6 12 12 C 1.50704 * 109.47271 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99449 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00111 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99483 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00154 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.46968 * 89.99739 * 16 14 12 18 18 H 1.48499 * 109.47022 * 209.99890 * 16 14 12 19 19 H 1.48508 * 109.47013 * 329.99984 * 16 14 12 20 20 C 1.53002 * 109.47254 * 240.00267 * 2 1 3 21 21 N 1.46900 * 109.47199 * 63.94374 * 20 2 1 22 22 C 1.46952 * 110.99998 * 199.58635 * 21 20 2 23 23 C 1.53052 * 109.36656 * 176.81323 * 22 21 20 24 24 N 1.46960 * 109.36105 * 58.39953 * 23 22 21 25 25 C 1.46895 * 110.99693 * 176.81080 * 24 23 22 26 26 C 1.46952 * 110.88246 * 300.68109 * 24 23 22 27 27 C 1.46960 * 110.99637 * 75.78679 * 21 20 2 28 28 H 1.08997 * 109.46771 * 179.22804 * 1 2 3 29 29 H 1.08995 * 109.47324 * 299.23261 * 1 2 3 30 30 H 1.09002 * 109.46751 * 59.23395 * 1 2 3 31 31 H 1.09000 * 109.47130 * 55.00855 * 4 2 1 32 32 H 1.08999 * 109.46933 * 174.99973 * 4 2 1 33 33 H 0.97006 * 119.99611 * 344.99614 * 5 4 2 34 34 H 1.09003 * 109.47064 * 299.99928 * 9 6 5 35 35 H 1.09002 * 109.47023 * 59.99779 * 9 6 5 36 36 H 1.09003 * 109.46951 * 299.99756 * 10 9 6 37 37 H 1.08991 * 109.47526 * 59.99414 * 10 9 6 38 38 H 1.09003 * 109.46895 * 299.99590 * 11 10 9 39 39 H 1.09000 * 109.47800 * 59.99850 * 11 10 9 40 40 H 0.97005 * 119.99389 * 179.97438 * 15 14 12 41 41 H 1.09001 * 109.46846 * 303.94737 * 20 2 1 42 42 H 1.08997 * 109.47042 * 183.94619 * 20 2 1 43 43 H 1.09007 * 109.48703 * 296.78070 * 22 21 20 44 44 H 1.09005 * 109.48989 * 56.84132 * 22 21 20 45 45 H 1.09001 * 109.48496 * 298.43670 * 23 22 21 46 46 H 1.09001 * 109.50573 * 178.37551 * 23 22 21 47 47 H 1.09004 * 109.47198 * 183.80153 * 25 24 23 48 48 H 1.08999 * 109.47797 * 303.80274 * 25 24 23 49 49 H 1.09004 * 109.47267 * 63.80278 * 25 24 23 50 50 H 1.08998 * 109.48639 * 299.35654 * 26 24 23 51 51 H 1.08999 * 109.51075 * 179.30176 * 26 24 23 52 52 H 1.08999 * 109.49259 * 303.15176 * 27 21 20 53 53 H 1.09000 * 109.49045 * 63.20232 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6524 0.0354 2.4424 6 16 1.7356 -0.6745 3.9362 7 8 1.2683 0.3288 4.8274 8 8 1.0345 -1.9007 3.7810 9 6 3.5048 -0.9811 4.1939 10 6 3.7144 -1.6436 5.5570 11 6 5.2067 -1.9015 5.7745 12 6 5.4133 -2.5535 7.1174 13 1 4.5649 -2.7633 7.7520 14 6 6.6851 -2.8831 7.5354 15 7 6.8652 -3.4526 8.7072 16 14 8.1524 -2.5209 6.4375 17 1 8.6732 -1.1635 6.7393 18 1 9.2167 -3.5262 6.6862 19 1 7.7334 -2.5853 5.0142 20 6 2.0401 -0.7212 -1.2493 21 7 1.6298 0.0241 -2.4468 22 6 1.6778 -0.8305 -3.6412 23 6 1.1688 -0.0422 -4.8503 24 7 1.9958 1.1590 -5.0320 25 6 1.5856 1.9042 -6.2295 26 6 1.9478 2.0137 -3.8376 27 6 2.4568 1.2253 -2.6285 28 1 -0.3633 -1.0276 -0.0138 29 1 -0.3634 0.5018 0.8967 30 1 -0.3633 0.5257 -0.8831 31 1 1.6055 -1.7197 1.2952 32 1 3.1263 -0.7994 1.2056 33 1 1.3471 0.9522 2.3573 34 1 3.8775 -1.6394 3.4091 35 1 4.0458 -0.0353 4.1620 36 1 3.3416 -0.9855 6.3419 37 1 3.1734 -2.5892 5.5884 38 1 5.5799 -2.5594 4.9896 39 1 5.7474 -0.9556 5.7434 40 1 7.7600 -3.6848 9.0011 41 1 1.6201 -1.7264 -1.2854 42 1 3.1278 -0.7828 -1.2146 43 1 2.7052 -1.1478 -3.8203 44 1 1.0480 -1.7068 -3.4870 45 1 0.1326 0.2517 -4.6826 46 1 1.2305 -0.6647 -5.7429 47 1 2.2562 2.7506 -6.3783 48 1 1.6302 1.2483 -7.0989 49 1 0.5658 2.2670 -6.1002 50 1 0.9204 2.3308 -3.6585 51 1 2.5773 2.8900 -3.9915 52 1 2.3949 1.8480 -1.7361 53 1 3.4931 0.9314 -2.7958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360649877.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:34 Heat of formation + Delta-G solvation = -106.807111 kcal Electronic energy + Delta-G solvation = -28795.684576 eV Core-core repulsion = 24827.650243 eV Total energy + Delta-G solvation = -3968.034333 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.37737 -38.34953 -38.01079 -37.00764 -36.49029 -36.03931 -34.24068 -33.08727 -31.87237 -30.14117 -29.36518 -27.31423 -25.72535 -25.37167 -24.62353 -23.81077 -22.25297 -21.20307 -20.68482 -20.22626 -18.97566 -18.45852 -17.72597 -17.19503 -17.00951 -16.44057 -16.25576 -16.13922 -16.01005 -15.78151 -15.67397 -15.56250 -15.33391 -14.86178 -14.83659 -14.22341 -14.08653 -13.67577 -13.64012 -13.41565 -13.30629 -13.22013 -13.16816 -13.08061 -13.02226 -12.96946 -12.68997 -12.55027 -12.52396 -12.23024 -12.07073 -11.98714 -11.88228 -11.83905 -11.63509 -11.52292 -11.40557 -11.37998 -11.25055 -10.77371 -10.28904 -9.39734 -9.20323 -8.29743 -6.35725 -0.69409 1.36866 1.39517 1.51098 1.84231 2.36481 2.80094 2.90445 3.00449 3.05413 3.29371 3.71074 3.84579 3.89287 3.96075 3.98631 4.09956 4.11897 4.23255 4.35686 4.38307 4.42982 4.52789 4.56383 4.61322 4.62630 4.63874 4.66095 4.69889 4.85231 4.86794 4.87641 4.90685 4.94106 4.97685 5.00652 5.01361 5.06041 5.13457 5.23371 5.35288 5.40903 5.46913 5.52807 5.62980 5.97990 6.00028 6.15318 6.18379 6.20443 6.25517 6.72621 7.28881 8.87212 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014437 B = 0.001957 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.016312 B =14306.511943 C =15615.952511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 H 0.087 0.913 4 C 0.107 3.893 5 N -1.106 6.106 6 S 2.628 3.372 7 O -0.997 6.997 8 O -0.993 6.993 9 C -0.610 4.610 10 C -0.105 4.105 11 C -0.005 4.005 12 C -0.545 4.545 13 H 0.029 0.971 14 C 0.000 4.000 15 N -0.952 5.952 16 Si 0.956 3.044 17 H -0.265 1.265 18 H -0.286 1.286 19 H -0.237 1.237 20 C 0.060 3.940 21 N -0.542 5.542 22 C 0.058 3.942 23 C 0.059 3.941 24 N -0.559 5.559 25 C 0.026 3.974 26 C 0.058 3.942 27 C 0.056 3.944 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.425 0.575 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.267 0.733 41 H 0.080 0.920 42 H 0.048 0.952 43 H 0.036 0.964 44 H 0.087 0.913 45 H 0.035 0.965 46 H 0.087 0.913 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.025 0.975 50 H 0.035 0.965 51 H 0.085 0.915 52 H 0.089 0.911 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.231 12.129 -34.153 37.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 H 0.106 0.894 4 C -0.019 4.019 5 N -0.868 5.868 6 S 2.723 3.277 7 O -0.987 6.987 8 O -0.983 6.983 9 C -0.741 4.741 10 C -0.144 4.144 11 C -0.044 4.044 12 C -0.583 4.583 13 H 0.047 0.953 14 C -0.197 4.197 15 N -0.593 5.593 16 Si 0.778 3.222 17 H -0.190 1.190 18 H -0.212 1.212 19 H -0.160 1.160 20 C -0.068 4.068 21 N -0.267 5.267 22 C -0.070 4.070 23 C -0.070 4.070 24 N -0.285 5.285 25 C -0.122 4.122 26 C -0.070 4.070 27 C -0.072 4.072 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.261 0.739 34 H 0.173 0.827 35 H 0.174 0.826 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.105 0.895 45 H 0.053 0.947 46 H 0.105 0.895 47 H 0.092 0.908 48 H 0.093 0.907 49 H 0.044 0.956 50 H 0.053 0.947 51 H 0.104 0.896 52 H 0.107 0.893 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.830 11.686 -33.491 37.088 hybrid contribution 1.032 0.208 0.187 1.069 sum -9.798 11.894 -33.304 36.696 Atomic orbital electron populations 1.21684 0.94663 1.01583 1.01428 1.21202 0.96722 1.00337 0.91906 0.89446 1.21588 1.00825 0.95485 0.84016 1.55236 1.83289 1.26686 1.21603 1.04209 0.77675 0.73028 0.72767 1.93537 1.80331 1.59813 1.65045 1.93534 1.70955 1.48234 1.85583 1.30504 1.24851 1.12425 1.06297 1.21177 1.00005 0.99953 0.93276 1.19509 0.93028 0.96841 0.94999 1.21578 0.93485 1.40012 1.03242 0.95301 1.26133 1.02767 0.94177 0.96607 1.70093 1.23429 1.43750 1.21988 0.85578 0.77594 0.78380 0.80610 1.19019 1.21178 1.15999 1.22092 0.98616 0.97332 0.88796 1.62074 1.54160 1.07499 1.02929 1.22176 1.00135 0.95601 0.89122 1.22168 0.94652 0.91948 0.98192 1.62194 1.54333 1.07946 1.03984 1.22367 0.98784 0.98706 0.92354 1.22164 1.00010 0.95584 0.89248 1.22219 0.94659 0.92236 0.98082 0.93522 0.93491 0.91715 0.90669 0.89379 0.73873 0.82706 0.82618 0.92052 0.91908 0.94850 0.95108 0.92467 0.90166 0.93417 0.94534 0.89464 0.94673 0.89493 0.90806 0.90748 0.95639 0.94663 0.89623 0.89283 0.94571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.96 71.98 0.64 -1.24 16 2 C -0.08 -0.91 2.46 -10.79 -0.03 -0.93 16 3 H 0.09 0.83 6.77 -2.39 -0.02 0.82 16 4 C 0.11 1.42 5.52 86.38 0.48 1.89 16 5 N -1.11 -18.16 5.40 -187.51 -1.01 -19.18 16 6 S 2.63 67.53 5.46 -56.49 -0.31 67.22 16 7 O -1.00 -32.74 18.08 -127.65 -2.31 -35.05 16 8 O -0.99 -32.46 17.50 -127.65 -2.23 -34.70 16 9 C -0.61 -15.14 6.07 71.98 0.44 -14.70 16 10 C -0.10 -3.95 5.16 30.59 0.16 -3.79 16 11 C -0.01 -0.23 4.04 29.85 0.12 -0.11 16 12 C -0.55 -31.60 9.66 25.60 0.25 -31.35 16 13 H 0.03 1.86 7.99 -2.91 -0.02 1.83 16 14 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 15 N -0.95 -60.14 13.96 21.45 0.30 -59.84 16 16 Si 0.96 42.98 27.47 68.60 1.88 44.87 16 17 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 18 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.24 -9.48 6.54 99.48 0.65 -8.83 16 20 C 0.06 0.64 4.40 86.30 0.38 1.02 16 21 N -0.54 -6.31 4.06 -895.70 -3.64 -9.95 16 22 C 0.06 0.65 5.56 86.31 0.48 1.13 16 23 C 0.06 0.65 5.62 86.31 0.49 1.13 16 24 N -0.56 -6.71 4.97 -921.94 -4.58 -11.29 16 25 C 0.03 0.23 9.60 127.69 1.23 1.46 16 26 C 0.06 0.65 5.62 86.31 0.49 1.13 16 27 C 0.06 0.62 5.43 86.31 0.47 1.09 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.69 7.52 -2.39 -0.02 0.67 16 30 H 0.06 0.91 7.74 -2.39 -0.02 0.90 16 31 H 0.07 1.15 7.69 -2.39 -0.02 1.13 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.42 5.59 8.33 -96.74 -0.81 4.78 16 34 H 0.15 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.16 3.07 8.14 -2.39 -0.02 3.05 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.03 1.40 7.20 -2.39 -0.02 1.39 16 39 H 0.03 1.29 7.57 -2.39 -0.02 1.27 16 40 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 41 H 0.08 0.85 7.84 -2.39 -0.02 0.83 16 42 H 0.05 0.48 7.99 -2.39 -0.02 0.46 16 43 H 0.04 0.46 8.14 -2.38 -0.02 0.44 16 44 H 0.09 0.85 8.00 -2.38 -0.02 0.83 16 45 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.09 0.79 8.13 -2.39 -0.02 0.77 16 47 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.07 0.56 8.13 -2.39 -0.02 0.54 16 49 H 0.02 0.23 8.14 -2.38 -0.02 0.21 16 50 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 51 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.09 0.84 6.73 -2.39 -0.02 0.82 16 53 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -79.03 423.03 -5.85 -84.88 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -0.01 Total: 15.86 kcal Atomic # 6 Polarization: -48.88 SS G_CDS: 6.05 Total: -42.83 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -8.93 Total: -100.25 kcal Atomic # 8 Polarization: -65.21 SS G_CDS: -4.54 Total: -69.75 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.87 kcal Atomic # 16 Polarization: 67.53 SS G_CDS: -0.31 Total: 67.22 kcal Total: -79.03 -5.85 -84.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360649877.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.927 kcal (2) G-P(sol) polarization free energy of solvation -79.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds