Wall clock time and date at job start Wed Apr 1 2020 04:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47265 * 2 1 4 4 C 1.53002 * 109.47029 * 239.99908 * 2 1 3 5 5 N 1.46496 * 109.47391 * 65.00307 * 4 2 1 6 6 S 1.65600 * 120.00355 * 165.00167 * 5 4 2 7 7 O 1.42100 * 104.27871 * 181.06835 * 6 5 4 8 8 O 1.42101 * 104.27568 * 308.92362 * 6 5 4 9 9 C 1.81396 * 104.45030 * 64.99497 * 6 5 4 10 10 C 1.53000 * 109.47151 * 179.97438 * 9 6 5 11 11 C 1.53002 * 109.47399 * 179.97438 * 10 9 6 12 12 C 1.50698 * 109.47247 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99963 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99526 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99452 * 180.02562 * 14 12 11 16 16 Si 1.86790 * 120.00624 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47420 * 89.99537 * 16 14 12 18 18 H 1.48496 * 109.47594 * 210.00048 * 16 14 12 19 19 H 1.48506 * 109.47134 * 329.99978 * 16 14 12 20 20 C 1.53002 * 109.47093 * 120.00097 * 2 1 3 21 21 N 1.46899 * 109.46913 * 296.77111 * 20 2 1 22 22 C 1.46958 * 111.00167 * 294.13208 * 21 20 2 23 23 C 1.53048 * 109.36807 * 176.81177 * 22 21 20 24 24 N 1.46953 * 109.38079 * 58.38798 * 23 22 21 25 25 C 1.46903 * 111.00180 * 176.82426 * 24 23 22 26 26 C 1.46955 * 110.88298 * 300.71605 * 24 23 22 27 27 C 1.46956 * 111.00112 * 170.33215 * 21 20 2 28 28 H 1.08994 * 109.47267 * 304.90057 * 1 2 3 29 29 H 1.08999 * 109.46908 * 64.90001 * 1 2 3 30 30 H 1.08998 * 109.47179 * 184.89934 * 1 2 3 31 31 H 1.09002 * 109.46880 * 184.99910 * 4 2 1 32 32 H 1.08999 * 109.46872 * 304.99645 * 4 2 1 33 33 H 0.96999 * 119.99855 * 344.99455 * 5 4 2 34 34 H 1.08995 * 109.47555 * 300.00072 * 9 6 5 35 35 H 1.09005 * 109.47050 * 60.00236 * 9 6 5 36 36 H 1.08993 * 109.47519 * 300.00627 * 10 9 6 37 37 H 1.09005 * 109.46874 * 60.00222 * 10 9 6 38 38 H 1.09003 * 109.47003 * 300.00894 * 11 10 9 39 39 H 1.09005 * 109.46730 * 60.00374 * 11 10 9 40 40 H 0.97000 * 119.99840 * 179.97438 * 15 14 12 41 41 H 1.09002 * 109.46982 * 176.77828 * 20 2 1 42 42 H 1.08998 * 109.47268 * 56.76867 * 20 2 1 43 43 H 1.09005 * 109.48818 * 56.84235 * 22 21 20 44 44 H 1.09004 * 109.48967 * 296.77853 * 22 21 20 45 45 H 1.08994 * 109.49385 * 178.36882 * 23 22 21 46 46 H 1.09004 * 109.48715 * 298.41210 * 23 22 21 47 47 H 1.09002 * 109.46583 * 59.99708 * 25 24 23 48 48 H 1.08994 * 109.47475 * 179.97438 * 25 24 23 49 49 H 1.09004 * 109.47194 * 300.00468 * 25 24 23 50 50 H 1.09004 * 109.47148 * 299.32045 * 26 24 23 51 51 H 1.08998 * 109.51009 * 179.27952 * 26 24 23 52 52 H 1.08994 * 109.48739 * 303.15903 * 27 21 20 53 53 H 1.09005 * 109.48448 * 63.20102 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6525 0.0353 -2.4424 6 16 2.3699 -0.2908 -3.8989 7 8 1.7750 0.6352 -4.7977 8 8 3.7628 -0.2499 -3.6204 9 6 1.8487 -1.9834 -4.2913 10 6 2.4538 -2.4055 -5.6317 11 6 2.0148 -3.8334 -5.9624 12 6 2.6113 -4.2493 -7.2823 13 1 3.2409 -3.5640 -7.8303 14 6 2.3531 -5.5049 -7.7903 15 7 2.8741 -5.8681 -8.9420 16 14 1.2635 -6.6900 -6.8430 17 1 -0.1498 -6.5030 -7.2585 18 1 1.6833 -8.0853 -7.1294 19 1 1.3908 -6.4237 -5.3875 20 6 2.0400 -0.7213 1.2492 21 7 1.6150 0.0148 2.4474 22 6 2.2609 1.3332 2.5122 23 6 1.7330 2.0978 3.7284 24 7 2.0027 1.3219 4.9469 25 6 1.5774 2.0582 6.1449 26 6 1.3573 0.0033 4.8819 27 6 1.8852 -0.7613 3.6657 28 1 -0.3633 0.5879 0.8428 29 1 -0.3633 0.4359 -0.9306 30 1 -0.3633 -1.0239 0.0878 31 1 3.1263 -0.7995 -1.2056 32 1 1.6054 -1.7198 -1.2951 33 1 0.9756 0.7272 -2.3793 34 1 2.1915 -2.6599 -3.5084 35 1 0.7613 -2.0231 -4.3554 36 1 2.1108 -1.7290 -6.4144 37 1 3.5413 -2.3657 -5.5680 38 1 2.3582 -4.5096 -5.1795 39 1 0.9273 -3.8736 -6.0260 40 1 2.6928 -6.7515 -9.2992 41 1 3.1285 -0.7716 1.2208 42 1 1.6302 -1.7308 1.2787 43 1 2.0358 1.8935 1.6047 44 1 3.3396 1.2057 2.6031 45 1 2.2320 3.0645 3.7950 46 1 0.6586 2.2495 3.6243 47 1 0.5074 2.2582 6.0875 48 1 1.7880 1.4612 7.0321 49 1 2.1206 3.0014 6.2036 50 1 0.2785 0.1308 4.7911 51 1 1.5820 -0.5571 5.7894 52 1 1.3862 -1.7280 3.5991 53 1 2.9597 -0.9129 3.7694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360649878.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:38 Heat of formation + Delta-G solvation = -105.917350 kcal Electronic energy + Delta-G solvation = -28804.104436 eV Core-core repulsion = 24836.108686 eV Total energy + Delta-G solvation = -3967.995750 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.41931 -38.36460 -38.04041 -37.01937 -36.48832 -36.05251 -34.23862 -33.07089 -31.87129 -30.13902 -29.37855 -27.34328 -25.73668 -25.37360 -24.65816 -23.82079 -22.24926 -21.15180 -20.62266 -20.27138 -18.97194 -18.53922 -17.80218 -17.21059 -17.01810 -16.44087 -16.25480 -16.12181 -15.99013 -15.84149 -15.75635 -15.56342 -15.20286 -14.85826 -14.82586 -14.21418 -14.06005 -13.91314 -13.62407 -13.41353 -13.25922 -13.20723 -13.19158 -13.11532 -13.00143 -12.93469 -12.68647 -12.54633 -12.53478 -12.23634 -12.10219 -11.93057 -11.88795 -11.83497 -11.63399 -11.56563 -11.40541 -11.37564 -11.21314 -10.77077 -10.31728 -9.40693 -9.22251 -8.29490 -6.35486 -0.70081 1.37216 1.39810 1.51412 1.83012 2.36795 2.79191 2.89705 2.99440 3.05713 3.28126 3.70969 3.83559 3.88256 3.96215 3.99183 4.04847 4.10398 4.23089 4.35127 4.37304 4.42286 4.49516 4.54167 4.60275 4.62156 4.63933 4.65665 4.69388 4.83968 4.86536 4.88574 4.91415 4.93765 4.97772 5.00304 5.01475 5.05037 5.11770 5.22650 5.35528 5.41350 5.47284 5.55288 5.63268 5.96739 5.98828 6.14110 6.16222 6.18957 6.25754 6.72888 7.29147 8.87481 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017905 B = 0.001882 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.451839 B =14875.205446 C =15905.352630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 H 0.076 0.924 4 C 0.108 3.892 5 N -1.107 6.107 6 S 2.627 3.373 7 O -0.997 6.997 8 O -0.995 6.995 9 C -0.609 4.609 10 C -0.105 4.105 11 C -0.005 4.005 12 C -0.545 4.545 13 H 0.029 0.971 14 C 0.000 4.000 15 N -0.952 5.952 16 Si 0.956 3.044 17 H -0.265 1.265 18 H -0.286 1.286 19 H -0.237 1.237 20 C 0.060 3.940 21 N -0.538 5.538 22 C 0.053 3.947 23 C 0.060 3.940 24 N -0.561 5.561 25 C 0.026 3.974 26 C 0.059 3.941 27 C 0.057 3.943 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.424 0.576 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.267 0.733 41 H 0.035 0.965 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.032 0.968 45 H 0.084 0.916 46 H 0.037 0.963 47 H 0.026 0.974 48 H 0.074 0.926 49 H 0.072 0.928 50 H 0.037 0.963 51 H 0.088 0.912 52 H 0.091 0.909 53 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.701 13.815 34.236 37.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.108 4.108 3 H 0.094 0.906 4 C -0.018 4.018 5 N -0.870 5.870 6 S 2.723 3.277 7 O -0.987 6.987 8 O -0.984 6.984 9 C -0.740 4.740 10 C -0.144 4.144 11 C -0.044 4.044 12 C -0.583 4.583 13 H 0.047 0.953 14 C -0.197 4.197 15 N -0.593 5.593 16 Si 0.778 3.222 17 H -0.190 1.190 18 H -0.212 1.212 19 H -0.160 1.160 20 C -0.068 4.068 21 N -0.263 5.263 22 C -0.075 4.075 23 C -0.069 4.069 24 N -0.286 5.286 25 C -0.122 4.122 26 C -0.069 4.069 27 C -0.071 4.071 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.261 0.739 34 H 0.173 0.827 35 H 0.174 0.826 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.050 0.950 45 H 0.102 0.898 46 H 0.056 0.944 47 H 0.045 0.955 48 H 0.093 0.907 49 H 0.091 0.909 50 H 0.055 0.945 51 H 0.106 0.894 52 H 0.109 0.891 53 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.983 14.172 33.652 37.176 hybrid contribution -0.581 -0.785 -0.288 1.019 sum -7.564 13.387 33.363 36.736 Atomic orbital electron populations 1.21687 0.93407 1.02496 1.01574 1.21257 0.97602 0.99907 0.92003 0.90585 1.21565 1.00574 0.95713 0.83977 1.55278 1.57976 1.50619 1.23090 1.04215 0.73623 0.77014 0.72840 1.93538 1.78793 1.61323 1.65031 1.93533 1.33449 1.87330 1.84128 1.30494 1.13515 1.23164 1.06834 1.21179 1.00253 0.99484 0.93488 1.19509 0.96859 0.93111 0.94892 1.21578 1.30784 1.00100 1.05856 0.95310 1.26130 0.97397 1.00319 0.95816 1.70091 1.46878 1.21293 1.21021 0.85579 0.78797 0.77063 0.80736 1.19029 1.21192 1.15966 1.22116 0.97964 0.98048 0.88709 1.62142 1.58396 1.03462 1.02285 1.22223 0.96247 0.90683 0.98333 1.22143 0.99120 0.96693 0.88903 1.62179 1.59041 1.04176 1.03220 1.22366 0.98405 0.99080 0.92321 1.22166 0.96446 0.89935 0.98366 1.22180 0.99139 0.96987 0.88823 0.92081 0.92718 0.92205 0.90782 0.89216 0.73892 0.82666 0.82560 0.92032 0.91939 0.94835 0.95084 0.92471 0.94642 0.89165 0.89491 0.95016 0.89790 0.94430 0.95526 0.90682 0.90903 0.94458 0.89414 0.89058 0.94801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 8.93 71.98 0.64 -0.78 16 2 C -0.09 -0.99 2.39 -10.79 -0.03 -1.02 16 3 H 0.08 0.94 6.34 -2.39 -0.02 0.92 16 4 C 0.11 1.45 5.52 86.38 0.48 1.93 16 5 N -1.11 -18.38 5.74 -187.49 -1.08 -19.46 16 6 S 2.63 67.61 5.46 -56.49 -0.31 67.30 16 7 O -1.00 -32.71 18.08 -127.65 -2.31 -35.01 16 8 O -0.99 -32.58 17.50 -127.65 -2.23 -34.81 16 9 C -0.61 -15.11 6.07 71.98 0.44 -14.67 16 10 C -0.10 -3.94 5.16 30.59 0.16 -3.78 16 11 C -0.01 -0.23 4.04 29.85 0.12 -0.11 16 12 C -0.55 -31.58 9.66 25.60 0.25 -31.33 16 13 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 14 C 0.00 0.00 5.47 84.65 0.46 0.46 16 15 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 16 Si 0.96 42.94 27.47 68.60 1.88 44.83 16 17 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 18 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 19 H -0.24 -9.45 6.54 99.48 0.65 -8.80 16 20 C 0.06 0.67 4.37 86.30 0.38 1.05 16 21 N -0.54 -6.51 4.18 -895.71 -3.74 -10.25 16 22 C 0.05 0.67 5.41 86.31 0.47 1.14 16 23 C 0.06 0.71 5.62 86.31 0.49 1.20 16 24 N -0.56 -6.98 4.97 -921.95 -4.58 -11.56 16 25 C 0.03 0.24 9.60 127.69 1.23 1.46 16 26 C 0.06 0.65 5.62 86.31 0.49 1.13 16 27 C 0.06 0.64 5.61 86.31 0.48 1.13 16 28 H 0.06 0.73 7.84 -2.39 -0.02 0.71 16 29 H 0.05 0.55 6.79 -2.39 -0.02 0.53 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 1.13 7.69 -2.39 -0.02 1.11 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.42 5.74 7.34 -96.75 -0.71 5.03 16 34 H 0.16 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.16 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 38 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 39 H 0.03 1.29 7.57 -2.38 -0.02 1.28 16 40 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 41 H 0.04 0.44 8.12 -2.39 -0.02 0.42 16 42 H 0.09 0.84 8.03 -2.39 -0.02 0.82 16 43 H 0.09 1.02 6.27 -2.38 -0.01 1.00 16 44 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.04 0.48 8.14 -2.38 -0.02 0.46 16 47 H 0.03 0.24 8.14 -2.39 -0.02 0.22 16 48 H 0.07 0.57 8.13 -2.39 -0.02 0.55 16 49 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 50 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 51 H 0.09 0.78 8.13 -2.39 -0.02 0.76 16 52 H 0.09 0.82 8.07 -2.39 -0.02 0.81 16 53 H 0.03 0.45 8.14 -2.38 -0.02 0.43 16 Total: -1.00 -78.95 421.26 -5.93 -84.88 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.09 Total: 16.13 kcal Atomic # 6 Polarization: -48.24 SS G_CDS: 6.04 Total: -42.20 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -9.10 Total: -101.10 kcal Atomic # 8 Polarization: -65.29 SS G_CDS: -4.54 Total: -69.83 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.88 Total: 44.83 kcal Atomic # 16 Polarization: 67.61 SS G_CDS: -0.31 Total: 67.30 kcal Total: -78.95 -5.93 -84.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360649878.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.040 kcal (2) G-P(sol) polarization free energy of solvation -78.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds