Wall clock time and date at job start Wed Apr 1 2020 06:17:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 N 1.46908 * 109.47072 * 2 1
4 4 C 1.46955 * 110.99572 * 293.80192 * 3 2 1
5 5 C 1.53057 * 109.36055 * 176.81289 * 4 3 2
6 6 N 1.46950 * 109.36681 * 58.40130 * 5 4 3
7 7 C 1.46900 * 111.00368 * 176.81402 * 6 5 4
8 8 C 1.53004 * 109.46870 * 307.67132 * 7 6 5
9 9 H 1.09000 * 109.46716 * 57.71501 * 8 7 6
10 10 C 1.52999 * 109.47030 * 177.71876 * 8 7 6
11 11 C 1.53006 * 109.46834 * 297.71912 * 8 7 6
12 12 N 1.46502 * 109.46802 * 175.00130 * 11 8 7
13 13 S 1.65597 * 119.99927 * 165.00044 * 12 11 8
14 14 O 1.42099 * 104.27692 * 181.07201 * 13 12 11
15 15 O 1.42106 * 104.27443 * 308.92463 * 13 12 11
16 16 C 1.81396 * 104.45289 * 64.99593 * 13 12 11
17 17 C 1.52995 * 109.47225 * 179.97438 * 16 13 12
18 18 C 1.50700 * 109.47140 * 180.02562 * 17 16 13
19 19 H 1.08004 * 120.00194 * 0.02562 * 18 17 16
20 20 C 1.37876 * 120.00048 * 180.02562 * 18 17 16
21 21 N 1.31510 * 120.00101 * 359.97438 * 20 18 17
22 22 Si 1.86798 * 120.00031 * 179.97438 * 20 18 17
23 23 H 1.48510 * 109.47058 * 359.97438 * 22 20 18
24 24 H 1.48504 * 109.47219 * 119.99635 * 22 20 18
25 25 H 1.48498 * 109.47434 * 240.00037 * 22 20 18
26 26 C 1.46963 * 110.88085 * 300.67886 * 6 5 4
27 27 C 1.46952 * 110.99807 * 170.00185 * 3 2 1
28 28 H 1.08996 * 109.47286 * 60.00075 * 1 2 3
29 29 H 1.09002 * 109.46964 * 180.02562 * 1 2 3
30 30 H 1.09004 * 109.47462 * 300.00003 * 1 2 3
31 31 H 1.09004 * 109.47462 * 239.99997 * 2 1 3
32 32 H 1.08996 * 109.47286 * 119.99924 * 2 1 3
33 33 H 1.09002 * 109.49260 * 296.77508 * 4 3 2
34 34 H 1.08996 * 109.49563 * 56.84521 * 4 3 2
35 35 H 1.08994 * 109.48943 * 298.42890 * 5 4 3
36 36 H 1.09000 * 109.48543 * 178.36582 * 5 4 3
37 37 H 1.08996 * 109.47163 * 67.67035 * 7 6 5
38 38 H 1.09002 * 109.47573 * 187.67318 * 7 6 5
39 39 H 1.08995 * 109.46920 * 65.00105 * 10 8 7
40 40 H 1.08999 * 109.46835 * 184.99838 * 10 8 7
41 41 H 1.09004 * 109.46988 * 304.99453 * 10 8 7
42 42 H 1.08996 * 109.46941 * 294.99414 * 11 8 7
43 43 H 1.08992 * 109.47048 * 55.00283 * 11 8 7
44 44 H 0.97000 * 119.99964 * 344.99406 * 12 11 8
45 45 H 1.09001 * 109.47284 * 300.00584 * 16 13 12
46 46 H 1.09007 * 109.46651 * 59.99936 * 16 13 12
47 47 H 1.09005 * 109.47413 * 299.99991 * 17 16 13
48 48 H 1.08995 * 109.47044 * 60.00353 * 17 16 13
49 49 H 0.97000 * 120.00013 * 180.02562 * 21 20 18
50 50 H 1.09003 * 109.48598 * 299.35436 * 26 6 5
51 51 H 1.08998 * 109.50913 * 179.29868 * 26 6 5
52 52 H 1.08995 * 109.49303 * 303.15463 * 27 3 2
53 53 H 1.09002 * 109.49109 * 63.22467 * 27 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0196 1.3851 0.0000
4 6 1.6731 2.0660 -1.2553
5 6 2.1294 3.5252 -1.1837
6 7 3.5788 3.5714 -0.9455
7 6 4.0685 4.9564 -0.9455
8 6 3.6068 5.6606 -2.2230
9 1 2.5191 5.6247 -2.2848
10 6 4.0683 7.1191 -2.1966
11 6 4.2103 4.9565 -3.4400
12 7 3.6749 5.5546 -4.6654
13 16 4.4102 5.2610 -6.1198
14 8 3.6469 6.0095 -7.0559
15 8 5.7800 5.5589 -5.8865
16 6 4.1831 3.4818 -6.3909
17 6 4.8267 3.0822 -7.7202
18 6 4.6374 1.6042 -7.9456
19 1 4.1104 1.0095 -7.2142
20 6 5.1370 1.0112 -9.0857
21 7 5.7783 1.7355 -9.9766
22 14 4.9031 -0.8209 -9.3648
23 1 4.1544 -1.4040 -8.2225
24 1 4.1390 -1.0368 -10.6198
25 1 6.2300 -1.4785 -9.4738
26 6 3.9253 2.8904 0.3098
27 6 3.4690 1.4312 0.2382
28 1 -0.3633 0.5138 -0.8899
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3634 0.5138 0.8900
31 1 1.8933 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8899
33 1 2.1715 1.5697 -2.0880
34 1 0.5938 2.0294 -1.4031
35 1 1.6106 4.0289 -0.3681
36 1 1.8995 4.0247 -2.1248
37 1 3.6715 5.4821 -0.0771
38 1 5.1577 4.9568 -0.9038
39 1 5.1573 7.1561 -2.2244
40 1 3.6647 7.6435 -3.0628
41 1 3.7116 7.5966 -1.2840
42 1 5.2943 5.0692 -3.4243
43 1 3.9546 3.8974 -3.4108
44 1 2.8896 6.1226 -4.6249
45 1 4.6526 2.9276 -5.5782
46 1 3.1179 3.2518 -6.4196
47 1 4.3566 3.6364 -8.5326
48 1 5.8917 3.3123 -7.6918
49 1 6.1295 1.3183 -10.7788
50 1 3.4269 3.3868 1.1424
51 1 5.0045 2.9271 0.4579
52 1 3.6990 0.9317 1.1792
53 1 3.9878 0.9276 -0.5775
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000360651105.mol2 53
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:17:09
Heat of formation + Delta-G solvation = -104.711077 kcal
Electronic energy + Delta-G solvation = -29933.329815 eV
Core-core repulsion = 25965.386374 eV
Total energy + Delta-G solvation = -3967.943442 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.203 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-40.54661 -38.45718 -38.04958 -36.98113 -36.20389 -35.88592 -33.49740 -33.11114
-31.89744 -31.41888 -27.95054 -27.57473 -26.79300 -24.92458 -24.54201 -23.58142
-22.52674 -21.28827 -20.56655 -20.18319 -19.04267 -18.17756 -17.50414 -17.46879
-17.02461 -16.52697 -16.35289 -16.12545 -16.02107 -15.74210 -15.58372 -15.35400
-15.22769 -14.85441 -14.49329 -14.41339 -13.99674 -13.77620 -13.69335 -13.36587
-13.17588 -13.12881 -13.06246 -12.95259 -12.89860 -12.81806 -12.77024 -12.62651
-12.35308 -12.24773 -12.21313 -12.16550 -12.10755 -11.88283 -11.74310 -11.62762
-11.45708 -11.20934 -11.13932 -10.65389 -10.26822 -9.37286 -9.16167 -8.25961
-6.39623 -0.62826 1.40056 1.40690 1.53869 1.91628 2.37694 2.84165
2.91878 2.97850 3.07508 3.31065 3.79842 3.83056 3.93661 4.03031
4.05866 4.14181 4.20213 4.21063 4.30412 4.42312 4.45891 4.53659
4.56063 4.57449 4.63520 4.64366 4.74702 4.77433 4.81464 4.87845
4.89514 4.93397 4.95709 5.03381 5.06977 5.12280 5.14110 5.18100
5.28760 5.29301 5.34882 5.37535 5.45212 5.68931 6.01781 6.03132
6.07061 6.18623 6.22224 6.23839 6.74073 7.30404 8.86602
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.007669 B = 0.003378 C = 0.002512
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3649.999763 B = 8287.397881 C =11143.158819
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.048 3.952
3 N -0.545 5.545
4 C 0.052 3.948
5 C 0.054 3.946
6 N -0.551 5.551
7 C 0.066 3.934
8 C -0.090 4.090
9 H 0.093 0.907
10 C -0.149 4.149
11 C 0.118 3.882
12 N -1.106 6.106
13 S 2.623 3.377
14 O -1.001 7.001
15 O -0.998 6.998
16 C -0.588 4.588
17 C 0.020 3.980
18 C -0.537 4.537
19 H 0.074 0.926
20 C -0.003 4.003
21 N -0.934 5.934
22 Si 0.973 3.027
23 H -0.257 1.257
24 H -0.277 1.277
25 H -0.278 1.278
26 C 0.062 3.938
27 C 0.055 3.945
28 H 0.051 0.949
29 H 0.067 0.933
30 H 0.061 0.939
31 H 0.024 0.976
32 H 0.081 0.919
33 H 0.027 0.973
34 H 0.087 0.913
35 H 0.042 0.958
36 H 0.091 0.909
37 H 0.051 0.949
38 H 0.081 0.919
39 H 0.052 0.948
40 H 0.056 0.944
41 H 0.071 0.929
42 H 0.067 0.933
43 H 0.080 0.920
44 H 0.424 0.576
45 H 0.138 0.862
46 H 0.141 0.859
47 H 0.006 0.994
48 H 0.006 0.994
49 H 0.267 0.733
50 H 0.043 0.957
51 H 0.087 0.913
52 H 0.089 0.911
53 H 0.029 0.971
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.753 2.480 26.787 28.615
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.080 4.080
3 N -0.270 5.270
4 C -0.076 4.076
5 C -0.074 4.074
6 N -0.277 5.277
7 C -0.062 4.062
8 C -0.110 4.110
9 H 0.111 0.889
10 C -0.207 4.207
11 C -0.008 4.008
12 N -0.868 5.868
13 S 2.719 3.281
14 O -0.991 6.991
15 O -0.988 6.988
16 C -0.720 4.720
17 C -0.019 4.019
18 C -0.576 4.576
19 H 0.092 0.908
20 C -0.202 4.202
21 N -0.574 5.574
22 Si 0.796 3.204
23 H -0.181 1.181
24 H -0.203 1.203
25 H -0.203 1.203
26 C -0.066 4.066
27 C -0.073 4.073
28 H 0.070 0.930
29 H 0.086 0.914
30 H 0.080 0.920
31 H 0.043 0.957
32 H 0.099 0.901
33 H 0.046 0.954
34 H 0.105 0.895
35 H 0.061 0.939
36 H 0.109 0.891
37 H 0.069 0.931
38 H 0.100 0.900
39 H 0.071 0.929
40 H 0.075 0.925
41 H 0.090 0.910
42 H 0.085 0.915
43 H 0.098 0.902
44 H 0.260 0.740
45 H 0.156 0.844
46 H 0.159 0.841
47 H 0.025 0.975
48 H 0.024 0.976
49 H 0.076 0.924
50 H 0.061 0.939
51 H 0.106 0.894
52 H 0.108 0.892
53 H 0.047 0.953
Dipole moment (debyes) X Y Z Total
from point charges -9.062 3.034 26.112 27.806
hybrid contribution -0.266 -1.164 -0.579 1.327
sum -9.328 1.870 25.533 27.248
Atomic orbital electron populations
1.21758 0.94094 1.02157 1.02178 1.22113 0.96776 0.88344 1.00743
1.62293 1.14016 1.16240 1.34494 1.22238 1.00962 0.94367 0.90065
1.22252 0.87500 0.95857 1.01746 1.62188 1.14154 1.16279 1.35043
1.22122 1.00988 0.86993 0.96130 1.21407 1.01523 0.95221 0.92846
0.88922 1.21830 1.01615 0.94733 1.02484 1.21521 0.98519 0.97869
0.82894 1.55248 1.45437 1.64443 1.21681 1.04311 0.73259 0.77664
0.72822 1.93497 1.72321 1.70177 1.63110 1.93495 1.36475 1.83920
1.84914 1.30326 1.11253 1.22996 1.07393 1.18816 0.94867 0.98337
0.89830 1.21532 1.36542 0.93561 1.05931 0.90807 1.26098 0.94515
1.03918 0.95641 1.70106 1.38083 1.38220 1.10962 0.85284 0.78150
0.78379 0.78550 1.18061 1.20284 1.20341 1.22121 1.01009 0.93462
0.90024 1.22186 0.87242 0.96757 1.01096 0.92957 0.91383 0.91989
0.95735 0.90081 0.95444 0.89471 0.93938 0.89072 0.93100 0.90047
0.92859 0.92509 0.90954 0.91480 0.90200 0.73965 0.84423 0.84083
0.97541 0.97560 0.92402 0.93922 0.89435 0.89222 0.95292
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.84 9.85 71.98 0.71 -1.13 16
2 C 0.05 0.71 5.68 86.30 0.49 1.20 16
3 N -0.54 -8.95 4.71 -895.71 -4.22 -13.16 16
4 C 0.05 0.88 5.41 86.31 0.47 1.35 16
5 C 0.05 0.83 5.13 86.31 0.44 1.27 16
6 N -0.55 -8.72 4.07 -895.69 -3.64 -12.36 16
7 C 0.07 0.90 4.55 86.30 0.39 1.29 16
8 C -0.09 -1.32 1.93 -10.79 -0.02 -1.34 16
9 H 0.09 1.16 6.11 -2.39 -0.01 1.14 16
10 C -0.15 -2.16 9.02 71.98 0.65 -1.51 16
11 C 0.12 2.45 5.39 86.38 0.47 2.91 16
12 N -1.11 -26.26 5.48 -187.49 -1.03 -27.29 16
13 S 2.62 93.48 5.46 -56.49 -0.31 93.17 16
14 O -1.00 -41.85 18.08 -127.65 -2.31 -44.16 16
15 O -1.00 -42.10 17.50 -127.65 -2.23 -44.33 16
16 C -0.59 -22.47 6.01 71.98 0.43 -22.03 16
17 C 0.02 1.08 4.98 29.85 0.15 1.23 16
18 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16
19 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16
20 C 0.00 -0.19 5.46 84.66 0.46 0.27 16
21 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16
22 Si 0.97 43.64 29.54 68.60 2.03 45.67 16
23 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16
24 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16
25 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16
26 C 0.06 0.89 5.62 86.31 0.48 1.37 16
27 C 0.06 0.86 5.61 86.31 0.48 1.35 16
28 H 0.05 0.70 6.49 -2.39 -0.02 0.69 16
29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16
30 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16
31 H 0.02 0.42 8.12 -2.38 -0.02 0.40 16
32 H 0.08 1.05 8.03 -2.39 -0.02 1.03 16
33 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16
34 H 0.09 1.34 6.34 -2.39 -0.02 1.32 16
35 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16
36 H 0.09 1.29 5.90 -2.39 -0.01 1.28 16
37 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16
38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16
39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16
40 H 0.06 0.88 7.68 -2.39 -0.02 0.87 16
41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16
42 H 0.07 1.58 7.69 -2.39 -0.02 1.56 16
43 H 0.08 1.64 7.53 -2.39 -0.02 1.62 16
44 H 0.42 8.02 8.35 -96.75 -0.81 7.21 16
45 H 0.14 4.69 8.14 -2.39 -0.02 4.67 16
46 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16
47 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16
48 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16
49 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16
50 H 0.04 0.60 8.14 -2.39 -0.02 0.59 16
51 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16
52 H 0.09 1.14 8.07 -2.39 -0.02 1.13 16
53 H 0.03 0.54 8.14 -2.39 -0.02 0.53 16
Total: -1.00 -75.73 421.66 -5.53 -81.26
By element:
Atomic # 1 Polarization: 21.72 SS G_CDS: 0.06 Total: 21.78 kcal
Atomic # 6 Polarization: -49.45 SS G_CDS: 5.84 Total: -43.61 kcal
Atomic # 7 Polarization: -101.18 SS G_CDS: -8.60 Total: -109.79 kcal
Atomic # 8 Polarization: -83.95 SS G_CDS: -4.54 Total: -88.49 kcal
Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal
Atomic # 16 Polarization: 93.48 SS G_CDS: -0.31 Total: 93.17 kcal
Total: -75.73 -5.53 -81.26 kcal
The number of atoms in the molecule is 53
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000360651105.mol2 53
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.448 kcal
(2) G-P(sol) polarization free energy of solvation -75.733 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.181 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.530 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.263 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.711 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds