Wall clock time and date at job start Wed Apr 1 2020 06:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46908 * 109.47072 * 2 1 4 4 C 1.46955 * 110.99572 * 293.80192 * 3 2 1 5 5 C 1.53057 * 109.36055 * 176.81289 * 4 3 2 6 6 N 1.46950 * 109.36681 * 58.40130 * 5 4 3 7 7 C 1.46900 * 111.00368 * 176.81402 * 6 5 4 8 8 C 1.53004 * 109.46870 * 307.67132 * 7 6 5 9 9 H 1.09000 * 109.46716 * 57.71501 * 8 7 6 10 10 C 1.52999 * 109.47030 * 177.71876 * 8 7 6 11 11 C 1.53006 * 109.46834 * 297.71912 * 8 7 6 12 12 N 1.46502 * 109.46802 * 175.00130 * 11 8 7 13 13 S 1.65597 * 119.99927 * 165.00044 * 12 11 8 14 14 O 1.42099 * 104.27692 * 181.07201 * 13 12 11 15 15 O 1.42106 * 104.27443 * 308.92463 * 13 12 11 16 16 C 1.81396 * 104.45289 * 64.99593 * 13 12 11 17 17 C 1.52995 * 109.47225 * 179.97438 * 16 13 12 18 18 C 1.50700 * 109.47140 * 180.02562 * 17 16 13 19 19 H 1.08004 * 120.00194 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00048 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00101 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00031 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.47058 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47219 * 119.99635 * 22 20 18 25 25 H 1.48498 * 109.47434 * 240.00037 * 22 20 18 26 26 C 1.46963 * 110.88085 * 300.67886 * 6 5 4 27 27 C 1.46952 * 110.99807 * 170.00185 * 3 2 1 28 28 H 1.08996 * 109.47286 * 60.00075 * 1 2 3 29 29 H 1.09002 * 109.46964 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47462 * 300.00003 * 1 2 3 31 31 H 1.09004 * 109.47462 * 239.99997 * 2 1 3 32 32 H 1.08996 * 109.47286 * 119.99924 * 2 1 3 33 33 H 1.09002 * 109.49260 * 296.77508 * 4 3 2 34 34 H 1.08996 * 109.49563 * 56.84521 * 4 3 2 35 35 H 1.08994 * 109.48943 * 298.42890 * 5 4 3 36 36 H 1.09000 * 109.48543 * 178.36582 * 5 4 3 37 37 H 1.08996 * 109.47163 * 67.67035 * 7 6 5 38 38 H 1.09002 * 109.47573 * 187.67318 * 7 6 5 39 39 H 1.08995 * 109.46920 * 65.00105 * 10 8 7 40 40 H 1.08999 * 109.46835 * 184.99838 * 10 8 7 41 41 H 1.09004 * 109.46988 * 304.99453 * 10 8 7 42 42 H 1.08996 * 109.46941 * 294.99414 * 11 8 7 43 43 H 1.08992 * 109.47048 * 55.00283 * 11 8 7 44 44 H 0.97000 * 119.99964 * 344.99406 * 12 11 8 45 45 H 1.09001 * 109.47284 * 300.00584 * 16 13 12 46 46 H 1.09007 * 109.46651 * 59.99936 * 16 13 12 47 47 H 1.09005 * 109.47413 * 299.99991 * 17 16 13 48 48 H 1.08995 * 109.47044 * 60.00353 * 17 16 13 49 49 H 0.97000 * 120.00013 * 180.02562 * 21 20 18 50 50 H 1.09003 * 109.48598 * 299.35436 * 26 6 5 51 51 H 1.08998 * 109.50913 * 179.29868 * 26 6 5 52 52 H 1.08995 * 109.49303 * 303.15463 * 27 3 2 53 53 H 1.09002 * 109.49109 * 63.22467 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6731 2.0660 -1.2553 5 6 2.1294 3.5252 -1.1837 6 7 3.5788 3.5714 -0.9455 7 6 4.0685 4.9564 -0.9455 8 6 3.6068 5.6606 -2.2230 9 1 2.5191 5.6247 -2.2848 10 6 4.0683 7.1191 -2.1966 11 6 4.2103 4.9565 -3.4400 12 7 3.6749 5.5546 -4.6654 13 16 4.4102 5.2610 -6.1198 14 8 3.6469 6.0095 -7.0559 15 8 5.7800 5.5589 -5.8865 16 6 4.1831 3.4818 -6.3909 17 6 4.8267 3.0822 -7.7202 18 6 4.6374 1.6042 -7.9456 19 1 4.1104 1.0095 -7.2142 20 6 5.1370 1.0112 -9.0857 21 7 5.7783 1.7355 -9.9766 22 14 4.9031 -0.8209 -9.3648 23 1 4.1544 -1.4040 -8.2225 24 1 4.1390 -1.0368 -10.6198 25 1 6.2300 -1.4785 -9.4738 26 6 3.9253 2.8904 0.3098 27 6 3.4690 1.4312 0.2382 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.1715 1.5697 -2.0880 34 1 0.5938 2.0294 -1.4031 35 1 1.6106 4.0289 -0.3681 36 1 1.8995 4.0247 -2.1248 37 1 3.6715 5.4821 -0.0771 38 1 5.1577 4.9568 -0.9038 39 1 5.1573 7.1561 -2.2244 40 1 3.6647 7.6435 -3.0628 41 1 3.7116 7.5966 -1.2840 42 1 5.2943 5.0692 -3.4243 43 1 3.9546 3.8974 -3.4108 44 1 2.8896 6.1226 -4.6249 45 1 4.6526 2.9276 -5.5782 46 1 3.1179 3.2518 -6.4196 47 1 4.3566 3.6364 -8.5326 48 1 5.8917 3.3123 -7.6918 49 1 6.1295 1.3183 -10.7788 50 1 3.4269 3.3868 1.1424 51 1 5.0045 2.9271 0.4579 52 1 3.6990 0.9317 1.1792 53 1 3.9878 0.9276 -0.5775 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360651105.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:09 Heat of formation + Delta-G solvation = -104.711077 kcal Electronic energy + Delta-G solvation = -29933.329815 eV Core-core repulsion = 25965.386374 eV Total energy + Delta-G solvation = -3967.943442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.54661 -38.45718 -38.04958 -36.98113 -36.20389 -35.88592 -33.49740 -33.11114 -31.89744 -31.41888 -27.95054 -27.57473 -26.79300 -24.92458 -24.54201 -23.58142 -22.52674 -21.28827 -20.56655 -20.18319 -19.04267 -18.17756 -17.50414 -17.46879 -17.02461 -16.52697 -16.35289 -16.12545 -16.02107 -15.74210 -15.58372 -15.35400 -15.22769 -14.85441 -14.49329 -14.41339 -13.99674 -13.77620 -13.69335 -13.36587 -13.17588 -13.12881 -13.06246 -12.95259 -12.89860 -12.81806 -12.77024 -12.62651 -12.35308 -12.24773 -12.21313 -12.16550 -12.10755 -11.88283 -11.74310 -11.62762 -11.45708 -11.20934 -11.13932 -10.65389 -10.26822 -9.37286 -9.16167 -8.25961 -6.39623 -0.62826 1.40056 1.40690 1.53869 1.91628 2.37694 2.84165 2.91878 2.97850 3.07508 3.31065 3.79842 3.83056 3.93661 4.03031 4.05866 4.14181 4.20213 4.21063 4.30412 4.42312 4.45891 4.53659 4.56063 4.57449 4.63520 4.64366 4.74702 4.77433 4.81464 4.87845 4.89514 4.93397 4.95709 5.03381 5.06977 5.12280 5.14110 5.18100 5.28760 5.29301 5.34882 5.37535 5.45212 5.68931 6.01781 6.03132 6.07061 6.18623 6.22224 6.23839 6.74073 7.30404 8.86602 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007669 B = 0.003378 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3649.999763 B = 8287.397881 C =11143.158819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 N -0.545 5.545 4 C 0.052 3.948 5 C 0.054 3.946 6 N -0.551 5.551 7 C 0.066 3.934 8 C -0.090 4.090 9 H 0.093 0.907 10 C -0.149 4.149 11 C 0.118 3.882 12 N -1.106 6.106 13 S 2.623 3.377 14 O -1.001 7.001 15 O -0.998 6.998 16 C -0.588 4.588 17 C 0.020 3.980 18 C -0.537 4.537 19 H 0.074 0.926 20 C -0.003 4.003 21 N -0.934 5.934 22 Si 0.973 3.027 23 H -0.257 1.257 24 H -0.277 1.277 25 H -0.278 1.278 26 C 0.062 3.938 27 C 0.055 3.945 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.024 0.976 32 H 0.081 0.919 33 H 0.027 0.973 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.424 0.576 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.006 0.994 48 H 0.006 0.994 49 H 0.267 0.733 50 H 0.043 0.957 51 H 0.087 0.913 52 H 0.089 0.911 53 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.753 2.480 26.787 28.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 N -0.270 5.270 4 C -0.076 4.076 5 C -0.074 4.074 6 N -0.277 5.277 7 C -0.062 4.062 8 C -0.110 4.110 9 H 0.111 0.889 10 C -0.207 4.207 11 C -0.008 4.008 12 N -0.868 5.868 13 S 2.719 3.281 14 O -0.991 6.991 15 O -0.988 6.988 16 C -0.720 4.720 17 C -0.019 4.019 18 C -0.576 4.576 19 H 0.092 0.908 20 C -0.202 4.202 21 N -0.574 5.574 22 Si 0.796 3.204 23 H -0.181 1.181 24 H -0.203 1.203 25 H -0.203 1.203 26 C -0.066 4.066 27 C -0.073 4.073 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.260 0.740 45 H 0.156 0.844 46 H 0.159 0.841 47 H 0.025 0.975 48 H 0.024 0.976 49 H 0.076 0.924 50 H 0.061 0.939 51 H 0.106 0.894 52 H 0.108 0.892 53 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -9.062 3.034 26.112 27.806 hybrid contribution -0.266 -1.164 -0.579 1.327 sum -9.328 1.870 25.533 27.248 Atomic orbital electron populations 1.21758 0.94094 1.02157 1.02178 1.22113 0.96776 0.88344 1.00743 1.62293 1.14016 1.16240 1.34494 1.22238 1.00962 0.94367 0.90065 1.22252 0.87500 0.95857 1.01746 1.62188 1.14154 1.16279 1.35043 1.22122 1.00988 0.86993 0.96130 1.21407 1.01523 0.95221 0.92846 0.88922 1.21830 1.01615 0.94733 1.02484 1.21521 0.98519 0.97869 0.82894 1.55248 1.45437 1.64443 1.21681 1.04311 0.73259 0.77664 0.72822 1.93497 1.72321 1.70177 1.63110 1.93495 1.36475 1.83920 1.84914 1.30326 1.11253 1.22996 1.07393 1.18816 0.94867 0.98337 0.89830 1.21532 1.36542 0.93561 1.05931 0.90807 1.26098 0.94515 1.03918 0.95641 1.70106 1.38083 1.38220 1.10962 0.85284 0.78150 0.78379 0.78550 1.18061 1.20284 1.20341 1.22121 1.01009 0.93462 0.90024 1.22186 0.87242 0.96757 1.01096 0.92957 0.91383 0.91989 0.95735 0.90081 0.95444 0.89471 0.93938 0.89072 0.93100 0.90047 0.92859 0.92509 0.90954 0.91480 0.90200 0.73965 0.84423 0.84083 0.97541 0.97560 0.92402 0.93922 0.89435 0.89222 0.95292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.85 71.98 0.71 -1.13 16 2 C 0.05 0.71 5.68 86.30 0.49 1.20 16 3 N -0.54 -8.95 4.71 -895.71 -4.22 -13.16 16 4 C 0.05 0.88 5.41 86.31 0.47 1.35 16 5 C 0.05 0.83 5.13 86.31 0.44 1.27 16 6 N -0.55 -8.72 4.07 -895.69 -3.64 -12.36 16 7 C 0.07 0.90 4.55 86.30 0.39 1.29 16 8 C -0.09 -1.32 1.93 -10.79 -0.02 -1.34 16 9 H 0.09 1.16 6.11 -2.39 -0.01 1.14 16 10 C -0.15 -2.16 9.02 71.98 0.65 -1.51 16 11 C 0.12 2.45 5.39 86.38 0.47 2.91 16 12 N -1.11 -26.26 5.48 -187.49 -1.03 -27.29 16 13 S 2.62 93.48 5.46 -56.49 -0.31 93.17 16 14 O -1.00 -41.85 18.08 -127.65 -2.31 -44.16 16 15 O -1.00 -42.10 17.50 -127.65 -2.23 -44.33 16 16 C -0.59 -22.47 6.01 71.98 0.43 -22.03 16 17 C 0.02 1.08 4.98 29.85 0.15 1.23 16 18 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 19 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 20 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 21 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 22 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 26 C 0.06 0.89 5.62 86.31 0.48 1.37 16 27 C 0.06 0.86 5.61 86.31 0.48 1.35 16 28 H 0.05 0.70 6.49 -2.39 -0.02 0.69 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.02 0.42 8.12 -2.38 -0.02 0.40 16 32 H 0.08 1.05 8.03 -2.39 -0.02 1.03 16 33 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.09 1.34 6.34 -2.39 -0.02 1.32 16 35 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.09 1.29 5.90 -2.39 -0.01 1.28 16 37 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.88 7.68 -2.39 -0.02 0.87 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.07 1.58 7.69 -2.39 -0.02 1.56 16 43 H 0.08 1.64 7.53 -2.39 -0.02 1.62 16 44 H 0.42 8.02 8.35 -96.75 -0.81 7.21 16 45 H 0.14 4.69 8.14 -2.39 -0.02 4.67 16 46 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16 47 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 48 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 49 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 50 H 0.04 0.60 8.14 -2.39 -0.02 0.59 16 51 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.09 1.14 8.07 -2.39 -0.02 1.13 16 53 H 0.03 0.54 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -75.73 421.66 -5.53 -81.26 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.06 Total: 21.78 kcal Atomic # 6 Polarization: -49.45 SS G_CDS: 5.84 Total: -43.61 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -8.60 Total: -109.79 kcal Atomic # 8 Polarization: -83.95 SS G_CDS: -4.54 Total: -88.49 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 93.48 SS G_CDS: -0.31 Total: 93.17 kcal Total: -75.73 -5.53 -81.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360651105.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.448 kcal (2) G-P(sol) polarization free energy of solvation -75.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds