Wall clock time and date at job start Wed Apr 1 2020 05:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47219 * 2 1 4 4 N 1.46502 * 109.47255 * 119.99792 * 2 1 3 5 5 C 1.34773 * 119.99816 * 85.00268 * 4 2 1 6 6 O 1.21275 * 120.00035 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99886 * 180.02562 * 5 4 2 8 8 H 1.09004 * 109.47310 * 59.99637 * 7 5 4 9 9 C 1.52995 * 109.47178 * 300.00006 * 7 5 4 10 10 N 1.46498 * 109.47289 * 179.97438 * 7 5 4 11 11 C 1.34774 * 120.00250 * 205.00099 * 10 7 5 12 12 O 1.21585 * 120.00239 * 359.97438 * 11 10 7 13 13 N 1.34774 * 120.00101 * 180.02562 * 11 10 7 14 14 C 1.46506 * 120.00251 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.47060 * 325.00368 * 14 13 11 16 16 C 1.52997 * 109.47289 * 205.00099 * 14 13 11 17 17 C 1.50699 * 109.47337 * 64.99998 * 16 14 13 18 18 H 1.08001 * 119.99707 * 359.97438 * 17 16 14 19 19 C 1.37875 * 120.00057 * 180.02562 * 17 16 14 20 20 N 1.31519 * 119.99906 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00126 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47048 * 90.00011 * 21 19 17 23 23 H 1.48501 * 109.47196 * 210.00388 * 21 19 17 24 24 H 1.48508 * 109.46912 * 330.00062 * 21 19 17 25 25 C 1.50701 * 109.46956 * 84.99989 * 14 13 11 26 26 C 1.38230 * 119.99878 * 39.72605 * 25 14 13 27 27 C 1.38243 * 119.99631 * 179.78728 * 26 25 14 28 28 C 1.38231 * 119.99827 * 0.44496 * 27 26 25 29 29 C 1.38229 * 120.00398 * 359.81209 * 28 27 26 30 30 C 1.38234 * 119.99919 * 359.97438 * 29 28 27 31 31 H 1.09007 * 109.46829 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47222 * 300.00020 * 1 2 3 33 33 H 1.09002 * 109.47091 * 60.00484 * 1 2 3 34 34 H 1.09002 * 109.47222 * 239.99980 * 2 1 3 35 35 H 1.08995 * 109.47609 * 179.97438 * 3 2 1 36 36 H 1.09005 * 109.46717 * 300.00299 * 3 2 1 37 37 H 1.08996 * 109.46716 * 59.99577 * 3 2 1 38 38 H 0.97001 * 119.99575 * 265.00327 * 4 2 1 39 39 H 1.09000 * 109.47437 * 59.99926 * 9 7 5 40 40 H 1.09002 * 109.47336 * 179.97438 * 9 7 5 41 41 H 1.08997 * 109.47241 * 299.99657 * 9 7 5 42 42 H 0.97006 * 120.00016 * 25.00154 * 10 7 5 43 43 H 0.97006 * 120.00165 * 359.97438 * 13 11 10 44 44 H 1.09004 * 109.46881 * 185.00331 * 16 14 13 45 45 H 1.09002 * 109.47196 * 304.99846 * 16 14 13 46 46 H 0.96995 * 119.99457 * 179.97438 * 20 19 17 47 47 H 1.08002 * 120.00498 * 0.02562 * 26 25 14 48 48 H 1.08002 * 119.99997 * 180.27329 * 27 26 25 49 49 H 1.08007 * 119.99687 * 179.83113 * 28 27 26 50 50 H 1.08005 * 120.00342 * 179.97438 * 29 28 27 51 51 H 1.08005 * 120.00572 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -2.0321 1.1944 6 8 1.8583 -2.6677 0.2027 7 6 2.6489 -2.7425 2.4250 8 1 1.9760 -2.5437 3.2592 9 6 4.0513 -2.2371 2.7695 10 7 2.6978 -4.1845 2.1708 11 6 2.6181 -5.0531 3.1982 12 8 2.5060 -4.6400 4.3362 13 7 2.6636 -6.3796 2.9643 14 6 2.5775 -7.3238 4.0811 15 1 3.0815 -6.9039 4.9516 16 6 3.2498 -8.6409 3.6885 17 6 4.7235 -8.4087 3.4755 18 1 5.1389 -7.4205 3.6066 19 6 5.5412 -9.4577 3.1123 20 7 6.8272 -9.2549 2.9259 21 14 4.8225 -11.1668 2.8848 22 1 4.3921 -11.3391 1.4741 23 1 5.8517 -12.1847 3.2162 24 1 3.6523 -11.3353 3.7835 25 6 1.1297 -7.5782 4.4133 26 6 0.1997 -7.7043 3.3985 27 6 -1.1277 -7.9421 3.7031 28 6 -1.5263 -8.0447 5.0227 29 6 -0.5971 -7.9133 6.0376 30 6 0.7309 -7.6799 5.7330 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6766 1.9563 0.8899 38 1 2.2490 -0.1822 1.9895 39 1 4.0146 -1.1643 2.9589 40 1 4.4141 -2.7506 3.6599 41 1 4.7242 -2.4360 1.9355 42 1 2.7876 -4.5141 1.2629 43 1 2.7534 -6.7092 2.0564 44 1 3.1084 -9.3723 4.4843 45 1 2.8041 -9.0158 2.7672 46 1 7.4025 -9.9930 2.6707 47 1 0.5105 -7.6209 2.3675 48 1 -1.8536 -8.0451 2.9101 49 1 -2.5638 -8.2277 5.2607 50 1 -0.9086 -7.9930 7.0687 51 1 1.4569 -7.5768 6.5259 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413412879.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:44 Heat of formation + Delta-G solvation = -53.478071 kcal Electronic energy + Delta-G solvation = -30767.951980 eV Core-core repulsion = 26666.786217 eV Total energy + Delta-G solvation = -4101.165763 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.48213 -39.58438 -38.57140 -36.40231 -35.52299 -34.48669 -32.70340 -32.21908 -31.18173 -30.51800 -29.62059 -29.04526 -27.59260 -25.20773 -24.49159 -22.31952 -21.81099 -21.72410 -20.82269 -20.23616 -19.80512 -18.51321 -17.18692 -16.81816 -16.60286 -16.27691 -15.86124 -15.38084 -15.00435 -14.72867 -14.65783 -14.32564 -14.26908 -14.16966 -13.69952 -13.33639 -13.27871 -13.08730 -12.98505 -12.71943 -12.62974 -12.53745 -12.47607 -12.36663 -12.31632 -11.89326 -11.77556 -11.61675 -11.32150 -11.24344 -11.03507 -10.71450 -10.48109 -10.19795 -9.96204 -9.84870 -9.70178 -9.40783 -9.30046 -8.94218 -8.60457 -8.56070 -8.35181 -8.23399 -6.08490 -4.07780 1.72629 1.76032 2.41273 2.66222 3.26468 3.28203 3.36402 3.39722 3.71190 4.16542 4.36829 4.40693 4.56208 4.67604 4.75102 4.87495 5.03993 5.12074 5.19401 5.22247 5.23993 5.25940 5.31626 5.32814 5.40607 5.48733 5.50895 5.55607 5.71773 5.77466 5.86975 5.88575 5.90992 6.06608 6.16461 6.20523 6.28714 6.35612 6.47123 6.64820 6.78896 6.80959 6.88191 6.97777 7.08110 7.21106 7.30696 7.35880 7.51377 7.68308 7.95634 8.46260 8.53202 8.97958 9.09760 9.52591 11.04353 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009379 B = 0.003005 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2984.580207 B = 9315.224930 C =11263.637274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.136 3.864 3 C -0.161 4.161 4 N -0.725 5.725 5 C 0.514 3.486 6 O -0.533 6.533 7 C 0.149 3.851 8 H 0.112 0.888 9 C -0.160 4.160 10 N -0.735 5.735 11 C 0.711 3.289 12 O -0.598 6.598 13 N -0.714 5.714 14 C 0.213 3.787 15 H 0.093 0.907 16 C -0.014 4.014 17 C -0.518 4.518 18 H 0.076 0.924 19 C 0.070 3.930 20 N -0.899 5.899 21 Si 0.875 3.125 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.265 1.265 25 C -0.076 4.076 26 C -0.107 4.107 27 C -0.126 4.126 28 C -0.134 4.134 29 C -0.123 4.123 30 C -0.107 4.107 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.402 0.598 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.404 0.596 43 H 0.398 0.602 44 H 0.035 0.965 45 H 0.019 0.981 46 H 0.263 0.737 47 H 0.117 0.883 48 H 0.114 0.886 49 H 0.114 0.886 50 H 0.116 0.884 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.378 17.373 -2.862 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.031 3.969 3 C -0.218 4.218 4 N -0.378 5.378 5 C 0.300 3.700 6 O -0.409 6.409 7 C 0.039 3.961 8 H 0.130 0.870 9 C -0.219 4.219 10 N -0.393 5.393 11 C 0.411 3.589 12 O -0.477 6.477 13 N -0.366 5.366 14 C 0.108 3.892 15 H 0.110 0.890 16 C -0.052 4.052 17 C -0.556 4.556 18 H 0.094 0.906 19 C -0.132 4.132 20 N -0.537 5.537 21 Si 0.702 3.298 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.189 1.189 25 C -0.078 4.078 26 C -0.126 4.126 27 C -0.144 4.144 28 C -0.152 4.152 29 C -0.142 4.142 30 C -0.125 4.125 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.236 0.764 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.240 0.760 43 H 0.232 0.768 44 H 0.053 0.947 45 H 0.037 0.963 46 H 0.073 0.927 47 H 0.135 0.865 48 H 0.132 0.868 49 H 0.132 0.868 50 H 0.134 0.866 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.506 17.173 -2.593 22.001 hybrid contribution -0.071 -1.007 -0.688 1.222 sum -13.577 16.166 -3.282 21.364 Atomic orbital electron populations 1.22196 0.95238 1.02798 1.02061 1.20953 0.94221 0.92828 0.88854 1.22080 1.01845 0.94941 1.02960 1.46050 1.67942 1.06792 1.16999 1.20809 0.77050 0.82497 0.89675 1.90697 1.49533 1.65785 1.34862 1.20450 0.98944 0.81261 0.95462 0.87031 1.22175 0.95186 1.00859 1.03682 1.44768 1.80581 1.03987 1.09999 1.15828 0.77403 0.81402 0.84284 1.90863 1.58358 1.78045 1.20481 1.45019 1.77259 1.03333 1.11005 1.19830 0.89258 0.90588 0.89487 0.88951 1.19890 0.96874 0.91430 0.97020 1.21017 0.90079 0.97468 1.47017 0.90561 1.24986 0.94688 0.98731 0.94749 1.69908 1.04069 1.32171 1.47579 0.86858 0.79267 0.84718 0.78949 1.20298 1.21370 1.18911 1.20634 0.96940 0.96915 0.93275 1.20933 0.92822 0.99682 0.99129 1.21052 0.95975 1.01058 0.96307 1.21004 0.99010 1.02113 0.93112 1.21051 0.93425 1.00862 0.98822 1.21036 0.95855 0.99484 0.96138 0.91981 0.92429 0.91647 0.89342 0.91829 0.90911 0.91996 0.76378 0.91657 0.90156 0.91800 0.75992 0.76776 0.94721 0.96313 0.92690 0.86528 0.86752 0.86842 0.86559 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.48 37.16 0.35 -0.88 16 2 C 0.14 1.02 3.18 -67.93 -0.22 0.81 16 3 C -0.16 -0.78 9.38 37.16 0.35 -0.43 16 4 N -0.72 -5.93 4.97 -53.80 -0.27 -6.19 16 5 C 0.51 6.04 7.19 -10.99 -0.08 5.96 16 6 O -0.53 -8.01 15.50 5.56 0.09 -7.93 16 7 C 0.15 1.86 2.98 -69.09 -0.21 1.65 16 8 H 0.11 1.43 7.58 -51.93 -0.39 1.03 16 9 C -0.16 -1.77 9.38 37.16 0.35 -1.42 16 10 N -0.74 -11.17 4.96 -59.82 -0.30 -11.47 16 11 C 0.71 13.14 8.49 -86.92 -0.74 12.40 16 12 O -0.60 -12.67 15.67 5.29 0.08 -12.59 16 13 N -0.71 -13.24 4.03 -59.81 -0.24 -13.48 16 14 C 0.21 4.30 2.12 -69.08 -0.15 4.15 16 15 H 0.09 2.05 7.44 -51.93 -0.39 1.67 16 16 C -0.01 -0.33 3.56 -27.89 -0.10 -0.43 16 17 C -0.52 -13.97 9.39 -34.44 -0.32 -14.30 16 18 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 19 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 20 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 21 Si 0.87 21.08 27.47 -169.99 -4.67 16.41 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 25 C -0.08 -1.39 4.91 -104.62 -0.51 -1.90 16 26 C -0.11 -1.78 9.33 -39.58 -0.37 -2.15 16 27 C -0.13 -1.85 10.05 -39.58 -0.40 -2.24 16 28 C -0.13 -1.87 10.05 -39.59 -0.40 -2.27 16 29 C -0.12 -1.81 10.05 -39.59 -0.40 -2.21 16 30 C -0.11 -1.81 9.67 -39.58 -0.38 -2.19 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.83 7.58 -51.93 -0.39 0.43 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.40 2.27 8.02 -40.82 -0.33 1.95 16 39 H 0.06 0.50 7.56 -51.93 -0.39 0.11 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.40 5.92 7.80 -40.82 -0.32 5.60 16 43 H 0.40 6.88 8.62 -40.82 -0.35 6.53 16 44 H 0.03 0.80 7.20 -51.93 -0.37 0.43 16 45 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.12 1.83 7.71 -52.49 -0.40 1.43 16 48 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 49 H 0.11 1.27 8.06 -52.48 -0.42 0.84 16 50 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 51 H 0.12 1.96 8.04 -52.48 -0.42 1.54 16 LS Contribution 422.70 15.07 6.37 6.37 Total: -1.00 -34.17 422.70 -9.87 -44.04 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -8.39 Total: 14.63 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -3.32 Total: -3.58 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.03 Total: -57.36 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: 0.17 Total: -20.52 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -34.17 -9.87 -44.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413412879.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.434 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds