Wall clock time and date at job start Wed Apr 1 2020 05:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47219 * 2 1 4 4 N 1.46502 * 109.47255 * 119.99792 * 2 1 3 5 5 C 1.34773 * 119.99816 * 85.00268 * 4 2 1 6 6 O 1.21275 * 120.00035 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99886 * 180.02562 * 5 4 2 8 8 H 1.09004 * 109.47310 * 59.99637 * 7 5 4 9 9 C 1.52995 * 109.47178 * 300.00006 * 7 5 4 10 10 N 1.46498 * 109.47289 * 179.97438 * 7 5 4 11 11 C 1.34774 * 120.00250 * 205.00099 * 10 7 5 12 12 O 1.21585 * 120.00239 * 359.97438 * 11 10 7 13 13 N 1.34774 * 120.00101 * 180.02562 * 11 10 7 14 14 C 1.46506 * 120.00251 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.47060 * 325.00368 * 14 13 11 16 16 C 1.52997 * 109.47289 * 205.00099 * 14 13 11 17 17 C 1.50699 * 109.47337 * 64.99998 * 16 14 13 18 18 H 1.08001 * 119.99707 * 359.97438 * 17 16 14 19 19 C 1.37875 * 120.00057 * 180.02562 * 17 16 14 20 20 N 1.31519 * 119.99906 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00126 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47048 * 90.00011 * 21 19 17 23 23 H 1.48501 * 109.47196 * 210.00388 * 21 19 17 24 24 H 1.48508 * 109.46912 * 330.00062 * 21 19 17 25 25 C 1.50701 * 109.46956 * 84.99989 * 14 13 11 26 26 C 1.38230 * 119.99878 * 39.72605 * 25 14 13 27 27 C 1.38243 * 119.99631 * 179.78728 * 26 25 14 28 28 C 1.38231 * 119.99827 * 0.44496 * 27 26 25 29 29 C 1.38229 * 120.00398 * 359.81209 * 28 27 26 30 30 C 1.38234 * 119.99919 * 359.97438 * 29 28 27 31 31 H 1.09007 * 109.46829 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47222 * 300.00020 * 1 2 3 33 33 H 1.09002 * 109.47091 * 60.00484 * 1 2 3 34 34 H 1.09002 * 109.47222 * 239.99980 * 2 1 3 35 35 H 1.08995 * 109.47609 * 179.97438 * 3 2 1 36 36 H 1.09005 * 109.46717 * 300.00299 * 3 2 1 37 37 H 1.08996 * 109.46716 * 59.99577 * 3 2 1 38 38 H 0.97001 * 119.99575 * 265.00327 * 4 2 1 39 39 H 1.09000 * 109.47437 * 59.99926 * 9 7 5 40 40 H 1.09002 * 109.47336 * 179.97438 * 9 7 5 41 41 H 1.08997 * 109.47241 * 299.99657 * 9 7 5 42 42 H 0.97006 * 120.00016 * 25.00154 * 10 7 5 43 43 H 0.97006 * 120.00165 * 359.97438 * 13 11 10 44 44 H 1.09004 * 109.46881 * 185.00331 * 16 14 13 45 45 H 1.09002 * 109.47196 * 304.99846 * 16 14 13 46 46 H 0.96995 * 119.99457 * 179.97438 * 20 19 17 47 47 H 1.08002 * 120.00498 * 0.02562 * 26 25 14 48 48 H 1.08002 * 119.99997 * 180.27329 * 27 26 25 49 49 H 1.08007 * 119.99687 * 179.83113 * 28 27 26 50 50 H 1.08005 * 120.00342 * 179.97438 * 29 28 27 51 51 H 1.08005 * 120.00572 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -2.0321 1.1944 6 8 1.8583 -2.6677 0.2027 7 6 2.6489 -2.7425 2.4250 8 1 1.9760 -2.5437 3.2592 9 6 4.0513 -2.2371 2.7695 10 7 2.6978 -4.1845 2.1708 11 6 2.6181 -5.0531 3.1982 12 8 2.5060 -4.6400 4.3362 13 7 2.6636 -6.3796 2.9643 14 6 2.5775 -7.3238 4.0811 15 1 3.0815 -6.9039 4.9516 16 6 3.2498 -8.6409 3.6885 17 6 4.7235 -8.4087 3.4755 18 1 5.1389 -7.4205 3.6066 19 6 5.5412 -9.4577 3.1123 20 7 6.8272 -9.2549 2.9259 21 14 4.8225 -11.1668 2.8848 22 1 4.3921 -11.3391 1.4741 23 1 5.8517 -12.1847 3.2162 24 1 3.6523 -11.3353 3.7835 25 6 1.1297 -7.5782 4.4133 26 6 0.1997 -7.7043 3.3985 27 6 -1.1277 -7.9421 3.7031 28 6 -1.5263 -8.0447 5.0227 29 6 -0.5971 -7.9133 6.0376 30 6 0.7309 -7.6799 5.7330 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6766 1.9563 0.8899 38 1 2.2490 -0.1822 1.9895 39 1 4.0146 -1.1643 2.9589 40 1 4.4141 -2.7506 3.6599 41 1 4.7242 -2.4360 1.9355 42 1 2.7876 -4.5141 1.2629 43 1 2.7534 -6.7092 2.0564 44 1 3.1084 -9.3723 4.4843 45 1 2.8041 -9.0158 2.7672 46 1 7.4025 -9.9930 2.6707 47 1 0.5105 -7.6209 2.3675 48 1 -1.8536 -8.0451 2.9101 49 1 -2.5638 -8.2277 5.2607 50 1 -0.9086 -7.9930 7.0687 51 1 1.4569 -7.5768 6.5259 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413412879.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:43 Heat of formation + Delta-G solvation = -76.873763 kcal Electronic energy + Delta-G solvation = -30768.966494 eV Core-core repulsion = 26666.786217 eV Total energy + Delta-G solvation = -4102.180277 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.64056 -40.82511 -39.82410 -37.30417 -36.87422 -35.84320 -34.69411 -33.39064 -32.34018 -31.69719 -30.99119 -30.49441 -28.09220 -26.77896 -25.62462 -23.59332 -23.30346 -22.77990 -21.82976 -21.36095 -21.26787 -19.82661 -19.04702 -18.11853 -17.60994 -17.49762 -16.98455 -16.66383 -16.38014 -16.09895 -15.80760 -15.70577 -15.44968 -15.12627 -15.04869 -14.71640 -14.52501 -14.31540 -14.15402 -13.94496 -13.88843 -13.63841 -13.54221 -13.37647 -13.15744 -13.05581 -13.00930 -12.68153 -12.46988 -12.34692 -12.29277 -11.95659 -11.91358 -11.78957 -11.71336 -11.42523 -11.28531 -10.98698 -10.76251 -10.35254 -10.17822 -9.81517 -9.73852 -9.52727 -8.27067 -6.31246 0.50150 0.56495 1.36611 1.39431 1.45236 1.50389 1.57263 2.12324 2.30543 2.36482 2.94546 3.07551 3.35559 3.57811 3.94001 3.96184 4.01994 4.04119 4.07406 4.17444 4.21060 4.32695 4.32829 4.37927 4.59273 4.60920 4.72896 4.73649 4.75032 4.76116 4.77612 4.94064 5.01423 5.04376 5.15760 5.17792 5.18878 5.26840 5.27289 5.33060 5.42151 5.49512 5.56025 5.59937 5.64912 5.66726 5.83589 6.05167 6.18555 6.28178 6.43605 6.75511 7.07241 7.12730 7.32602 7.61788 8.89310 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009379 B = 0.003005 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2984.580207 B = 9315.224930 C =11263.637274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 C -0.152 4.152 4 N -0.706 5.706 5 C 0.519 3.481 6 O -0.570 6.570 7 C 0.145 3.855 8 H 0.111 0.889 9 C -0.153 4.153 10 N -0.728 5.728 11 C 0.708 3.292 12 O -0.628 6.628 13 N -0.714 5.714 14 C 0.225 3.775 15 H 0.059 0.941 16 C -0.005 4.005 17 C -0.516 4.516 18 H 0.032 0.968 19 C 0.011 3.989 20 N -0.948 5.948 21 Si 0.944 3.056 22 H -0.264 1.264 23 H -0.288 1.288 24 H -0.249 1.249 25 C -0.100 4.100 26 C -0.120 4.120 27 C -0.126 4.126 28 C -0.128 4.128 29 C -0.123 4.123 30 C -0.128 4.128 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.417 0.583 39 H 0.105 0.895 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.407 0.593 43 H 0.403 0.597 44 H 0.034 0.966 45 H 0.032 0.968 46 H 0.265 0.735 47 H 0.119 0.881 48 H 0.143 0.857 49 H 0.150 0.850 50 H 0.145 0.855 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.374 17.917 -3.122 24.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.028 3.972 3 C -0.210 4.210 4 N -0.359 5.359 5 C 0.304 3.696 6 O -0.449 6.449 7 C 0.036 3.964 8 H 0.129 0.871 9 C -0.212 4.212 10 N -0.385 5.385 11 C 0.408 3.592 12 O -0.510 6.510 13 N -0.366 5.366 14 C 0.119 3.881 15 H 0.077 0.923 16 C -0.043 4.043 17 C -0.554 4.554 18 H 0.051 0.949 19 C -0.186 4.186 20 N -0.588 5.588 21 Si 0.768 3.232 22 H -0.189 1.189 23 H -0.214 1.214 24 H -0.172 1.172 25 C -0.101 4.101 26 C -0.139 4.139 27 C -0.144 4.144 28 C -0.145 4.145 29 C -0.141 4.141 30 C -0.147 4.147 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.254 0.746 39 H 0.124 0.876 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.243 0.757 43 H 0.238 0.762 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.074 0.926 47 H 0.137 0.863 48 H 0.161 0.839 49 H 0.168 0.832 50 H 0.163 0.837 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -16.514 17.782 -2.859 24.435 hybrid contribution 0.841 -1.032 -0.579 1.452 sum -15.672 16.751 -3.437 23.195 Atomic orbital electron populations 1.22167 0.94996 1.01287 1.03483 1.21087 0.94410 0.94200 0.87507 1.22034 1.01917 0.92752 1.04299 1.45958 1.66417 1.05553 1.17984 1.20583 0.76856 0.83511 0.88619 1.90685 1.51458 1.66806 1.35907 1.20650 0.99924 0.79774 0.96048 0.87134 1.22123 0.93881 1.03067 1.02109 1.44755 1.79500 1.04973 1.09298 1.15926 0.77263 0.81526 0.84452 1.90828 1.59845 1.78492 1.21827 1.44935 1.77363 1.03478 1.10868 1.19431 0.90808 0.89265 0.88581 0.92257 1.19741 0.94123 0.92965 0.97421 1.21188 0.92513 0.95602 1.46144 0.94923 1.25886 0.94883 1.03313 0.94529 1.70064 1.05788 1.33644 1.49353 0.85747 0.78805 0.78931 0.79704 1.18937 1.21362 1.17232 1.20438 0.95643 0.99501 0.94515 1.21063 0.93721 1.00249 0.98837 1.21418 0.95442 0.99790 0.97747 1.21465 1.00599 1.00021 0.92449 1.21392 0.92317 0.99603 1.00741 1.21190 0.97325 1.00580 0.95589 0.94874 0.91194 0.90086 0.91398 0.91658 0.89741 0.90494 0.74592 0.87595 0.92899 0.92185 0.75669 0.76213 0.94825 0.94954 0.92583 0.86323 0.83903 0.83210 0.83740 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.48 71.98 0.68 -1.51 16 2 C 0.13 1.81 3.18 44.99 0.14 1.95 16 3 C -0.15 -1.08 9.38 71.98 0.68 -0.40 16 4 N -0.71 -10.62 4.97 -442.53 -2.20 -12.82 16 5 C 0.52 12.10 7.19 87.66 0.63 12.73 16 6 O -0.57 -17.45 15.50 -3.01 -0.05 -17.50 16 7 C 0.15 3.68 2.98 44.24 0.13 3.81 16 8 H 0.11 2.86 7.58 -2.38 -0.02 2.84 16 9 C -0.15 -3.40 9.38 71.98 0.68 -2.72 16 10 N -0.73 -23.10 4.96 -461.43 -2.29 -25.39 16 11 C 0.71 27.54 8.49 179.06 1.52 29.06 16 12 O -0.63 -27.97 15.67 -3.99 -0.06 -28.03 16 13 N -0.71 -27.84 4.03 -461.41 -1.86 -29.70 16 14 C 0.22 9.46 2.12 44.24 0.09 9.55 16 15 H 0.06 2.85 7.44 -2.39 -0.02 2.83 16 16 C 0.00 -0.22 3.56 29.85 0.11 -0.11 16 17 C -0.52 -29.06 9.39 25.60 0.24 -28.82 16 18 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 19 C 0.01 0.63 5.47 84.65 0.46 1.10 16 20 N -0.95 -58.90 13.96 21.45 0.30 -58.61 16 21 Si 0.94 43.64 27.47 68.60 1.88 45.52 16 22 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 23 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 24 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 25 C -0.10 -3.65 4.91 -19.87 -0.10 -3.75 16 26 C -0.12 -3.88 9.33 22.27 0.21 -3.67 16 27 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 28 C -0.13 -3.09 10.05 22.27 0.22 -2.86 16 29 C -0.12 -3.30 10.05 22.27 0.22 -3.08 16 30 C -0.13 -4.32 9.67 22.27 0.22 -4.11 16 31 H 0.03 0.64 8.14 -2.38 -0.02 0.63 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 34 H 0.07 1.25 7.58 -2.39 -0.02 1.23 16 35 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 37 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.42 3.75 8.02 -92.71 -0.74 3.01 16 39 H 0.11 1.43 7.56 -2.39 -0.02 1.41 16 40 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.41 12.48 7.80 -92.70 -0.72 11.76 16 43 H 0.40 14.58 8.62 -92.70 -0.80 13.78 16 44 H 0.03 1.56 7.20 -2.38 -0.02 1.55 16 45 H 0.03 1.41 7.57 -2.39 -0.02 1.39 16 46 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 47 H 0.12 3.65 7.71 -2.91 -0.02 3.63 16 48 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 49 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 50 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 51 H 0.12 3.89 8.04 -2.91 -0.02 3.87 16 Total: -1.00 -78.13 422.70 0.72 -77.42 By element: Atomic # 1 Polarization: 46.42 SS G_CDS: -1.37 Total: 45.04 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 6.36 Total: 4.06 kcal Atomic # 7 Polarization: -120.46 SS G_CDS: -6.04 Total: -126.51 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -0.11 Total: -45.53 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.52 kcal Total: -78.13 0.72 -77.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413412879.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.542 kcal (2) G-P(sol) polarization free energy of solvation -78.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds