Wall clock time and date at job start Wed Apr 1 2020 05:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52988 * 109.47130 * 2 1 4 4 N 1.46496 * 109.46941 * 120.00180 * 2 1 3 5 5 C 1.34779 * 120.00120 * 85.27241 * 4 2 1 6 6 O 1.21281 * 119.99900 * 359.72870 * 5 4 2 7 7 C 1.50702 * 120.00120 * 179.72379 * 5 4 2 8 8 H 1.08999 * 109.47142 * 300.00087 * 7 5 4 9 9 C 1.53002 * 109.46918 * 60.00015 * 7 5 4 10 10 N 1.46502 * 109.47321 * 180.02562 * 7 5 4 11 11 C 1.34776 * 119.99908 * 154.99863 * 10 7 5 12 12 O 1.21585 * 120.00015 * 359.97438 * 11 10 7 13 13 N 1.34777 * 119.99561 * 180.02562 * 11 10 7 14 14 C 1.46495 * 119.99766 * 175.10535 * 13 11 10 15 15 H 1.09007 * 109.47105 * 326.43887 * 14 13 11 16 16 C 1.52997 * 109.47657 * 86.43964 * 14 13 11 17 17 C 1.50708 * 109.47580 * 185.71684 * 16 14 13 18 18 H 1.07997 * 119.99605 * 356.00770 * 17 16 14 19 19 C 1.37875 * 119.99654 * 176.00796 * 17 16 14 20 20 N 1.31514 * 119.99439 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00569 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47044 * 90.00160 * 21 19 17 23 23 H 1.48498 * 109.47063 * 210.00144 * 21 19 17 24 24 H 1.48495 * 109.47024 * 330.00141 * 21 19 17 25 25 C 1.50701 * 109.47555 * 206.44418 * 14 13 11 26 26 C 1.38242 * 119.99175 * 319.72739 * 25 14 13 27 27 C 1.38236 * 119.99451 * 179.80838 * 26 25 14 28 28 C 1.38241 * 120.00390 * 0.39329 * 27 26 25 29 29 C 1.38236 * 119.99188 * 359.85803 * 28 27 26 30 30 C 1.38223 * 120.00587 * 359.95565 * 29 28 27 31 31 H 1.08992 * 109.47163 * 300.00117 * 1 2 3 32 32 H 1.09003 * 109.46545 * 59.99877 * 1 2 3 33 33 H 1.09001 * 109.47196 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46839 * 239.99873 * 2 1 3 35 35 H 1.09004 * 109.47204 * 179.97438 * 3 2 1 36 36 H 1.09003 * 109.47507 * 299.99534 * 3 2 1 37 37 H 1.09000 * 109.47363 * 60.00194 * 3 2 1 38 38 H 0.96996 * 120.00214 * 264.99862 * 4 2 1 39 39 H 1.08999 * 109.46875 * 179.97438 * 9 7 5 40 40 H 1.08993 * 109.47149 * 299.99876 * 9 7 5 41 41 H 1.08999 * 109.47189 * 60.00636 * 9 7 5 42 42 H 0.96997 * 119.99548 * 335.00637 * 10 7 5 43 43 H 0.96998 * 120.00253 * 355.09471 * 13 11 10 44 44 H 1.08998 * 109.47434 * 305.71762 * 16 14 13 45 45 H 1.08999 * 109.46822 * 65.71668 * 16 14 13 46 46 H 0.97003 * 120.00097 * 180.02562 * 20 19 17 47 47 H 1.07995 * 120.00152 * 359.97438 * 26 25 14 48 48 H 1.08003 * 119.99974 * 180.22787 * 27 26 25 49 49 H 1.07996 * 120.00212 * 179.83265 * 28 27 26 50 50 H 1.08006 * 119.99104 * 179.97438 * 29 28 27 51 51 H 1.08000 * 120.00297 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1522 -2.0317 1.1925 6 8 1.8638 -2.6673 0.2006 7 6 2.6604 -2.7416 2.4209 8 1 3.6589 -2.3779 2.6637 9 6 1.7182 -2.4674 3.5948 10 7 2.7153 -4.1830 2.1644 11 6 3.5676 -4.9596 2.8621 12 8 4.2914 -4.4640 3.7041 13 7 3.6184 -6.2855 2.6258 14 6 4.6178 -7.1130 3.3059 15 1 5.5304 -6.5347 3.4511 16 6 4.0734 -7.5565 4.6652 17 6 5.1507 -8.2885 5.4234 18 1 6.1050 -8.4803 4.9555 19 6 4.9179 -8.7132 6.7143 20 7 5.8579 -9.3523 7.3757 21 14 3.2671 -8.3820 7.5233 22 1 2.3457 -9.5138 7.2492 23 1 3.4541 -8.2398 8.9895 24 1 2.6893 -7.1291 6.9742 25 6 4.9209 -8.3269 2.4658 26 6 3.8983 -8.9853 1.8086 27 6 4.1768 -10.0964 1.0348 28 6 5.4766 -10.5540 0.9247 29 6 6.4983 -9.8986 1.5862 30 6 6.2204 -8.7853 2.3568 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6767 1.9562 0.8900 38 1 2.2490 -0.1824 1.9894 39 1 2.0856 -2.9812 4.4831 40 1 1.6779 -1.3950 3.7854 41 1 0.7198 -2.8312 3.3520 42 1 2.1382 -4.5782 1.4924 43 1 2.9930 -6.6919 2.0055 44 1 3.7595 -6.6814 5.2340 45 1 3.2202 -8.2183 4.5164 46 1 5.6941 -9.6515 8.2838 47 1 2.8824 -8.6300 1.8975 48 1 3.3784 -10.6086 0.5183 49 1 5.6937 -11.4237 0.3223 50 1 7.5137 -10.2564 1.5005 51 1 7.0187 -8.2730 2.8732 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413412883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:47 Heat of formation + Delta-G solvation = -49.687438 kcal Electronic energy + Delta-G solvation = -30550.885121 eV Core-core repulsion = 26449.883732 eV Total energy + Delta-G solvation = -4101.001389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.59557 -39.64416 -38.63243 -36.48662 -35.52136 -34.54389 -32.85388 -32.23459 -31.19671 -30.42955 -29.64073 -28.93666 -27.66127 -25.26886 -24.44175 -22.36903 -21.89204 -21.75723 -20.88387 -20.35008 -19.63037 -18.74371 -17.38780 -16.81665 -16.70051 -16.09522 -15.72472 -15.53558 -14.87301 -14.76522 -14.75109 -14.53022 -14.12632 -14.00895 -13.72987 -13.58487 -13.41873 -12.99343 -12.90660 -12.78355 -12.76109 -12.65888 -12.53125 -12.45783 -12.19881 -11.82387 -11.80523 -11.69837 -11.39791 -11.22252 -10.76852 -10.62572 -10.59167 -10.07483 -10.01356 -9.90015 -9.71890 -9.49391 -9.15372 -9.06780 -8.51936 -8.47550 -8.41265 -8.06103 -5.98149 -3.95096 1.83588 1.89454 2.30581 2.54553 3.14155 3.35033 3.42329 3.48121 3.56538 4.26861 4.28218 4.46535 4.51329 4.57246 4.62673 4.80719 4.92370 5.01398 5.12901 5.24254 5.24693 5.30124 5.33944 5.37696 5.38233 5.41714 5.49447 5.55529 5.62342 5.67441 5.82832 5.93720 6.02584 6.03581 6.11366 6.16951 6.37083 6.48754 6.51951 6.59246 6.80878 6.88702 6.95086 7.06154 7.09868 7.11915 7.38425 7.44415 7.50539 7.82787 7.85319 8.33091 8.56459 8.94355 9.06123 9.64183 11.14897 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010930 B = 0.002710 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.229288 B =10328.935906 C =12106.291351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 C -0.161 4.161 4 N -0.724 5.724 5 C 0.515 3.485 6 O -0.535 6.535 7 C 0.147 3.853 8 H 0.115 0.885 9 C -0.161 4.161 10 N -0.737 5.737 11 C 0.707 3.293 12 O -0.582 6.582 13 N -0.737 5.737 14 C 0.210 3.790 15 H 0.093 0.907 16 C -0.015 4.015 17 C -0.510 4.510 18 H 0.078 0.922 19 C 0.070 3.930 20 N -0.902 5.902 21 Si 0.875 3.125 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.265 1.265 25 C -0.053 4.053 26 C -0.121 4.121 27 C -0.123 4.123 28 C -0.132 4.132 29 C -0.119 4.119 30 C -0.091 4.091 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.402 0.598 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.402 0.598 43 H 0.389 0.611 44 H 0.031 0.969 45 H 0.011 0.989 46 H 0.262 0.738 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.114 0.886 50 H 0.117 0.883 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.509 16.451 -16.216 24.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 C -0.219 4.219 4 N -0.377 5.377 5 C 0.300 3.700 6 O -0.411 6.411 7 C 0.037 3.963 8 H 0.133 0.867 9 C -0.219 4.219 10 N -0.395 5.395 11 C 0.407 3.593 12 O -0.460 6.460 13 N -0.391 5.391 14 C 0.106 3.894 15 H 0.111 0.889 16 C -0.053 4.053 17 C -0.548 4.548 18 H 0.096 0.904 19 C -0.131 4.131 20 N -0.541 5.541 21 Si 0.703 3.297 22 H -0.205 1.205 23 H -0.214 1.214 24 H -0.190 1.190 25 C -0.054 4.054 26 C -0.139 4.139 27 C -0.141 4.141 28 C -0.151 4.151 29 C -0.137 4.137 30 C -0.109 4.109 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.237 0.763 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.238 0.762 43 H 0.223 0.777 44 H 0.049 0.951 45 H 0.030 0.970 46 H 0.072 0.928 47 H 0.131 0.869 48 H 0.132 0.868 49 H 0.132 0.868 50 H 0.135 0.865 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.974 16.364 -15.995 24.579 hybrid contribution -1.398 -0.169 0.460 1.482 sum -10.372 16.195 -15.535 24.723 Atomic orbital electron populations 1.22187 0.95155 1.02737 1.02123 1.20960 0.94262 0.92871 0.88787 1.22084 1.01895 0.94903 1.03016 1.46054 1.67789 1.06813 1.17030 1.20781 0.77153 0.82562 0.89462 1.90693 1.49762 1.65845 1.34802 1.20488 1.02051 0.81647 0.92121 0.86730 1.22179 0.99307 1.02045 0.98418 1.44817 1.44650 1.06148 1.43928 1.15828 0.80548 0.81554 0.81407 1.90947 1.45676 1.73437 1.35893 1.45446 1.38661 1.05887 1.49148 1.19920 0.91097 0.87188 0.91168 0.88876 1.19948 0.97141 0.96793 0.91436 1.20982 1.00393 1.35288 0.98184 0.90401 1.24926 0.96398 0.94673 0.97096 1.69901 1.33171 1.39340 1.11704 0.86850 0.85088 0.79213 0.78592 1.20508 1.21435 1.18993 1.19885 0.93490 0.96824 0.95190 1.20804 0.98350 0.96448 0.98288 1.20958 0.96483 0.96927 0.99780 1.20995 0.93223 0.99969 1.00876 1.21058 0.98959 0.95997 0.97685 1.20995 0.96289 0.96652 0.96979 0.92391 0.91625 0.92014 0.89363 0.91817 0.90864 0.91942 0.76293 0.90100 0.91449 0.92007 0.76229 0.77661 0.95109 0.97036 0.92842 0.86880 0.86764 0.86841 0.86482 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.49 37.16 0.35 -0.69 16 2 C 0.14 0.91 3.19 -67.94 -0.22 0.69 16 3 C -0.16 -0.70 9.38 37.15 0.35 -0.35 16 4 N -0.72 -5.30 4.97 -53.81 -0.27 -5.56 16 5 C 0.51 5.48 7.19 -10.98 -0.08 5.40 16 6 O -0.53 -7.36 15.50 5.56 0.09 -7.27 16 7 C 0.15 1.68 2.98 -69.08 -0.21 1.47 16 8 H 0.12 1.38 7.57 -51.93 -0.39 0.98 16 9 C -0.16 -1.59 9.38 37.16 0.35 -1.25 16 10 N -0.74 -10.06 4.96 -59.81 -0.30 -10.36 16 11 C 0.71 12.42 8.50 -86.92 -0.74 11.68 16 12 O -0.58 -12.49 15.69 5.29 0.08 -12.41 16 13 N -0.74 -12.55 5.02 -59.81 -0.30 -12.85 16 14 C 0.21 4.29 2.18 -69.09 -0.15 4.14 16 15 H 0.09 2.09 7.47 -51.92 -0.39 1.70 16 16 C -0.01 -0.36 3.82 -27.88 -0.11 -0.47 16 17 C -0.51 -14.46 9.19 -34.44 -0.32 -14.78 16 18 H 0.08 2.31 6.69 -52.49 -0.35 1.96 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 21 Si 0.87 22.37 27.55 -169.99 -4.68 17.69 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.27 -6.67 6.43 56.52 0.36 -6.30 16 25 C -0.05 -1.00 4.49 -104.62 -0.47 -1.47 16 26 C -0.12 -1.99 9.05 -39.58 -0.36 -2.34 16 27 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 28 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 29 C -0.12 -1.92 10.05 -39.59 -0.40 -2.32 16 30 C -0.09 -1.68 8.64 -39.59 -0.34 -2.02 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.76 7.57 -51.93 -0.39 0.37 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.40 1.98 8.02 -40.82 -0.33 1.66 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 0.46 7.56 -51.93 -0.39 0.07 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.40 5.00 7.81 -40.82 -0.32 4.68 16 43 H 0.39 5.48 6.91 -40.82 -0.28 5.19 16 44 H 0.03 0.81 6.92 -51.93 -0.36 0.45 16 45 H 0.01 0.28 7.76 -51.93 -0.40 -0.13 16 46 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 47 H 0.11 1.63 6.92 -52.49 -0.36 1.27 16 48 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 49 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 50 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 51 H 0.12 2.32 7.83 -52.49 -0.41 1.90 16 LS Contribution 418.03 15.07 6.30 6.30 Total: -1.00 -36.01 418.03 -9.74 -45.74 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -8.21 Total: 10.92 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -3.23 Total: -4.95 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.09 Total: -56.02 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: 0.17 Total: -19.68 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.68 Total: 17.69 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -36.01 -9.74 -45.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413412883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.945 kcal (2) G-P(sol) polarization free energy of solvation -36.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds