Wall clock time and date at job start Wed Apr 1 2020 05:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52988 * 109.47130 * 2 1 4 4 N 1.46496 * 109.46941 * 120.00180 * 2 1 3 5 5 C 1.34779 * 120.00120 * 85.27241 * 4 2 1 6 6 O 1.21281 * 119.99900 * 359.72870 * 5 4 2 7 7 C 1.50702 * 120.00120 * 179.72379 * 5 4 2 8 8 H 1.08999 * 109.47142 * 300.00087 * 7 5 4 9 9 C 1.53002 * 109.46918 * 60.00015 * 7 5 4 10 10 N 1.46502 * 109.47321 * 180.02562 * 7 5 4 11 11 C 1.34776 * 119.99908 * 154.99863 * 10 7 5 12 12 O 1.21585 * 120.00015 * 359.97438 * 11 10 7 13 13 N 1.34777 * 119.99561 * 180.02562 * 11 10 7 14 14 C 1.46495 * 119.99766 * 175.10535 * 13 11 10 15 15 H 1.09007 * 109.47105 * 326.43887 * 14 13 11 16 16 C 1.52997 * 109.47657 * 86.43964 * 14 13 11 17 17 C 1.50708 * 109.47580 * 185.71684 * 16 14 13 18 18 H 1.07997 * 119.99605 * 356.00770 * 17 16 14 19 19 C 1.37875 * 119.99654 * 176.00796 * 17 16 14 20 20 N 1.31514 * 119.99439 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00569 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47044 * 90.00160 * 21 19 17 23 23 H 1.48498 * 109.47063 * 210.00144 * 21 19 17 24 24 H 1.48495 * 109.47024 * 330.00141 * 21 19 17 25 25 C 1.50701 * 109.47555 * 206.44418 * 14 13 11 26 26 C 1.38242 * 119.99175 * 319.72739 * 25 14 13 27 27 C 1.38236 * 119.99451 * 179.80838 * 26 25 14 28 28 C 1.38241 * 120.00390 * 0.39329 * 27 26 25 29 29 C 1.38236 * 119.99188 * 359.85803 * 28 27 26 30 30 C 1.38223 * 120.00587 * 359.95565 * 29 28 27 31 31 H 1.08992 * 109.47163 * 300.00117 * 1 2 3 32 32 H 1.09003 * 109.46545 * 59.99877 * 1 2 3 33 33 H 1.09001 * 109.47196 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46839 * 239.99873 * 2 1 3 35 35 H 1.09004 * 109.47204 * 179.97438 * 3 2 1 36 36 H 1.09003 * 109.47507 * 299.99534 * 3 2 1 37 37 H 1.09000 * 109.47363 * 60.00194 * 3 2 1 38 38 H 0.96996 * 120.00214 * 264.99862 * 4 2 1 39 39 H 1.08999 * 109.46875 * 179.97438 * 9 7 5 40 40 H 1.08993 * 109.47149 * 299.99876 * 9 7 5 41 41 H 1.08999 * 109.47189 * 60.00636 * 9 7 5 42 42 H 0.96997 * 119.99548 * 335.00637 * 10 7 5 43 43 H 0.96998 * 120.00253 * 355.09471 * 13 11 10 44 44 H 1.08998 * 109.47434 * 305.71762 * 16 14 13 45 45 H 1.08999 * 109.46822 * 65.71668 * 16 14 13 46 46 H 0.97003 * 120.00097 * 180.02562 * 20 19 17 47 47 H 1.07995 * 120.00152 * 359.97438 * 26 25 14 48 48 H 1.08003 * 119.99974 * 180.22787 * 27 26 25 49 49 H 1.07996 * 120.00212 * 179.83265 * 28 27 26 50 50 H 1.08006 * 119.99104 * 179.97438 * 29 28 27 51 51 H 1.08000 * 120.00297 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1522 -2.0317 1.1925 6 8 1.8638 -2.6673 0.2006 7 6 2.6604 -2.7416 2.4209 8 1 3.6589 -2.3779 2.6637 9 6 1.7182 -2.4674 3.5948 10 7 2.7153 -4.1830 2.1644 11 6 3.5676 -4.9596 2.8621 12 8 4.2914 -4.4640 3.7041 13 7 3.6184 -6.2855 2.6258 14 6 4.6178 -7.1130 3.3059 15 1 5.5304 -6.5347 3.4511 16 6 4.0734 -7.5565 4.6652 17 6 5.1507 -8.2885 5.4234 18 1 6.1050 -8.4803 4.9555 19 6 4.9179 -8.7132 6.7143 20 7 5.8579 -9.3523 7.3757 21 14 3.2671 -8.3820 7.5233 22 1 2.3457 -9.5138 7.2492 23 1 3.4541 -8.2398 8.9895 24 1 2.6893 -7.1291 6.9742 25 6 4.9209 -8.3269 2.4658 26 6 3.8983 -8.9853 1.8086 27 6 4.1768 -10.0964 1.0348 28 6 5.4766 -10.5540 0.9247 29 6 6.4983 -9.8986 1.5862 30 6 6.2204 -8.7853 2.3568 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6767 1.9562 0.8900 38 1 2.2490 -0.1824 1.9894 39 1 2.0856 -2.9812 4.4831 40 1 1.6779 -1.3950 3.7854 41 1 0.7198 -2.8312 3.3520 42 1 2.1382 -4.5782 1.4924 43 1 2.9930 -6.6919 2.0055 44 1 3.7595 -6.6814 5.2340 45 1 3.2202 -8.2183 4.5164 46 1 5.6941 -9.6515 8.2838 47 1 2.8824 -8.6300 1.8975 48 1 3.3784 -10.6086 0.5183 49 1 5.6937 -11.4237 0.3223 50 1 7.5137 -10.2564 1.5005 51 1 7.0187 -8.2730 2.8732 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413412883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:46 Heat of formation + Delta-G solvation = -75.357936 kcal Electronic energy + Delta-G solvation = -30551.998277 eV Core-core repulsion = 26449.883732 eV Total energy + Delta-G solvation = -4102.114545 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.68484 -40.85261 -39.91673 -37.29447 -36.82174 -35.85730 -34.83703 -33.40545 -32.41045 -31.68496 -30.80855 -30.57089 -28.08377 -26.77468 -25.57249 -23.71665 -23.53778 -22.68260 -21.85050 -21.35409 -21.17627 -19.99815 -19.09102 -18.17709 -17.69728 -17.30770 -16.84303 -16.58560 -16.39851 -16.06507 -16.00214 -15.72498 -15.39386 -15.21087 -15.08541 -14.67704 -14.60391 -14.45225 -14.15744 -14.14945 -13.89464 -13.54507 -13.38518 -13.29921 -13.16436 -13.03916 -13.01788 -12.71883 -12.49495 -12.40845 -12.29619 -11.98851 -11.91036 -11.82714 -11.64826 -11.47582 -11.22782 -10.99324 -10.74459 -10.39909 -10.18640 -9.88257 -9.70836 -9.47229 -8.25679 -6.27016 0.53087 0.60556 1.30738 1.34361 1.44498 1.45670 1.49267 2.09122 2.24139 2.36193 2.97585 3.09883 3.26869 3.55932 3.83530 3.95538 4.01227 4.04003 4.09176 4.16956 4.23735 4.32941 4.34315 4.46064 4.60124 4.68259 4.71197 4.74655 4.76439 4.76886 4.80741 4.94333 5.01609 5.05573 5.17494 5.20283 5.21238 5.27671 5.32494 5.33813 5.37892 5.44778 5.49421 5.62935 5.65947 5.68816 5.86160 5.98102 6.21808 6.31490 6.42826 6.78239 7.03805 7.10898 7.35025 7.56555 8.90374 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010930 B = 0.002710 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.229288 B =10328.935906 C =12106.291351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.132 3.868 3 C -0.154 4.154 4 N -0.707 5.707 5 C 0.520 3.480 6 O -0.569 6.569 7 C 0.142 3.858 8 H 0.108 0.892 9 C -0.153 4.153 10 N -0.723 5.723 11 C 0.705 3.295 12 O -0.625 6.625 13 N -0.727 5.727 14 C 0.225 3.775 15 H 0.060 0.940 16 C -0.004 4.004 17 C -0.512 4.512 18 H 0.048 0.952 19 C 0.010 3.990 20 N -0.947 5.947 21 Si 0.939 3.061 22 H -0.263 1.263 23 H -0.284 1.284 24 H -0.260 1.260 25 C -0.078 4.078 26 C -0.126 4.126 27 C -0.119 4.119 28 C -0.128 4.128 29 C -0.127 4.127 30 C -0.120 4.120 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.416 0.584 39 H 0.052 0.948 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.410 0.590 43 H 0.406 0.594 44 H 0.010 0.990 45 H 0.021 0.979 46 H 0.264 0.736 47 H 0.134 0.866 48 H 0.152 0.848 49 H 0.150 0.850 50 H 0.136 0.864 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.282 17.090 -17.881 27.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.028 3.972 3 C -0.212 4.212 4 N -0.360 5.360 5 C 0.306 3.694 6 O -0.448 6.448 7 C 0.033 3.967 8 H 0.126 0.874 9 C -0.212 4.212 10 N -0.381 5.381 11 C 0.404 3.596 12 O -0.506 6.506 13 N -0.382 5.382 14 C 0.120 3.880 15 H 0.078 0.922 16 C -0.043 4.043 17 C -0.550 4.550 18 H 0.067 0.933 19 C -0.186 4.186 20 N -0.588 5.588 21 Si 0.764 3.236 22 H -0.188 1.188 23 H -0.210 1.210 24 H -0.185 1.185 25 C -0.078 4.078 26 C -0.145 4.145 27 C -0.137 4.137 28 C -0.145 4.145 29 C -0.145 4.145 30 C -0.139 4.139 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.254 0.746 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.086 0.914 42 H 0.248 0.752 43 H 0.243 0.757 44 H 0.029 0.971 45 H 0.039 0.961 46 H 0.073 0.927 47 H 0.152 0.848 48 H 0.170 0.830 49 H 0.167 0.833 50 H 0.153 0.847 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.791 17.053 -17.700 27.260 hybrid contribution -0.457 -0.335 0.877 1.044 sum -12.247 16.719 -16.823 26.693 Atomic orbital electron populations 1.22148 0.94578 1.01556 1.03471 1.21078 0.94691 0.93972 0.87451 1.22045 1.01739 0.93073 1.04339 1.45977 1.66354 1.05697 1.17948 1.20543 0.76955 0.83480 0.88448 1.90682 1.51600 1.66777 1.35720 1.20681 1.02350 0.80288 0.93415 0.87421 1.22123 0.98719 1.04115 0.96229 1.44701 1.43379 1.06948 1.43055 1.15979 0.80606 0.81743 0.81235 1.90916 1.47533 1.74210 1.37927 1.45142 1.38374 1.05669 1.49033 1.19353 0.90221 0.88024 0.90378 0.92196 1.19776 0.96120 0.95402 0.92982 1.21262 1.00395 1.34859 0.98528 0.93329 1.25799 1.00266 0.94677 0.97903 1.70040 1.35465 1.41010 1.12256 0.85821 0.80643 0.79587 0.77561 1.18831 1.20959 1.18469 1.19798 0.94451 0.96892 0.96687 1.21084 0.98553 0.96844 0.97970 1.21423 0.97617 0.95967 0.98677 1.21458 0.92769 1.00360 0.99960 1.21339 1.00710 0.95198 0.97221 1.21042 0.96076 0.98225 0.98552 0.91084 0.90288 0.94381 0.91501 0.92024 0.89729 0.90442 0.74629 0.92892 0.87914 0.91447 0.75246 0.75661 0.97131 0.96076 0.92672 0.84844 0.83005 0.83264 0.84656 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.49 71.98 0.68 -1.05 16 2 C 0.13 1.56 3.19 44.99 0.14 1.70 16 3 C -0.15 -0.95 9.38 71.98 0.68 -0.27 16 4 N -0.71 -9.17 4.97 -442.55 -2.20 -11.37 16 5 C 0.52 10.62 7.19 87.66 0.63 11.25 16 6 O -0.57 -15.42 15.50 -3.03 -0.05 -15.47 16 7 C 0.14 3.18 2.98 44.25 0.13 3.31 16 8 H 0.11 2.60 7.57 -2.39 -0.02 2.59 16 9 C -0.15 -2.87 9.38 71.98 0.68 -2.19 16 10 N -0.72 -19.70 4.96 -461.40 -2.29 -21.99 16 11 C 0.70 25.33 8.50 179.05 1.52 26.85 16 12 O -0.63 -28.00 15.69 -3.98 -0.06 -28.06 16 13 N -0.73 -25.07 5.02 -461.42 -2.32 -27.38 16 14 C 0.23 9.60 2.18 44.25 0.10 9.69 16 15 H 0.06 2.92 7.47 -2.38 -0.02 2.90 16 16 C 0.00 -0.21 3.82 29.85 0.11 -0.10 16 17 C -0.51 -30.23 9.19 25.60 0.24 -30.00 16 18 H 0.05 3.08 6.69 -2.91 -0.02 3.06 16 19 C 0.01 0.62 5.47 84.65 0.46 1.09 16 20 N -0.95 -60.62 13.96 21.45 0.30 -60.33 16 21 Si 0.94 46.64 27.55 68.60 1.89 48.53 16 22 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.26 -12.62 6.43 99.48 0.64 -11.98 16 25 C -0.08 -2.98 4.49 -19.87 -0.09 -3.06 16 26 C -0.13 -3.95 9.05 22.27 0.20 -3.75 16 27 C -0.12 -3.16 10.05 22.27 0.22 -2.94 16 28 C -0.13 -3.43 10.05 22.27 0.22 -3.21 16 29 C -0.13 -4.04 10.05 22.27 0.22 -3.82 16 30 C -0.12 -4.67 8.64 22.26 0.19 -4.48 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.04 0.60 8.14 -2.39 -0.02 0.59 16 34 H 0.07 1.11 7.57 -2.39 -0.02 1.09 16 35 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 36 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.08 0.27 8.14 -2.39 -0.02 0.26 16 38 H 0.42 3.08 8.02 -92.71 -0.74 2.34 16 39 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.10 1.15 7.56 -2.39 -0.02 1.13 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.41 9.94 7.81 -92.71 -0.72 9.22 16 43 H 0.41 11.09 6.91 -92.71 -0.64 10.45 16 44 H 0.01 0.56 6.92 -2.39 -0.02 0.54 16 45 H 0.02 1.01 7.76 -2.39 -0.02 0.99 16 46 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 47 H 0.13 3.51 6.92 -2.91 -0.02 3.49 16 48 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 49 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 50 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 51 H 0.10 4.23 7.83 -2.91 -0.02 4.21 16 Total: -1.00 -82.32 418.03 0.40 -81.91 By element: Atomic # 1 Polarization: 36.34 SS G_CDS: -1.22 Total: 35.12 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 6.35 Total: -0.96 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -6.50 Total: -121.06 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -0.11 Total: -43.53 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.89 Total: 48.53 kcal Total: -82.32 0.40 -81.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413412883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.556 kcal (2) G-P(sol) polarization free energy of solvation -82.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds