Wall clock time and date at job start Wed Apr 1 2020 05:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46487 * 2 1 4 4 N 1.46500 * 109.46915 * 119.99906 * 2 1 3 5 5 C 1.34772 * 119.99808 * 155.00629 * 4 2 1 6 6 O 1.21285 * 120.00017 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00189 * 179.97438 * 5 4 2 8 8 H 1.09004 * 109.47155 * 59.99842 * 7 5 4 9 9 C 1.52996 * 109.47125 * 299.99903 * 7 5 4 10 10 N 1.46503 * 109.47463 * 179.97438 * 7 5 4 11 11 C 1.34770 * 120.00224 * 204.72300 * 10 7 5 12 12 O 1.21586 * 120.00158 * 0.27639 * 11 10 7 13 13 N 1.34777 * 120.00114 * 180.27908 * 11 10 7 14 14 C 1.46503 * 120.00265 * 175.09536 * 13 11 10 15 15 H 1.09002 * 109.46970 * 326.59411 * 14 13 11 16 16 C 1.53000 * 109.47047 * 86.59315 * 14 13 11 17 17 C 1.50694 * 109.47317 * 185.72081 * 16 14 13 18 18 H 1.08004 * 119.99758 * 355.55099 * 17 16 14 19 19 C 1.37881 * 120.00265 * 175.55158 * 17 16 14 20 20 N 1.31508 * 119.99837 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99994 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46883 * 60.00042 * 21 19 17 23 23 H 1.48492 * 109.46862 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47057 * 300.00380 * 21 19 17 25 25 C 1.50695 * 109.47277 * 206.59226 * 14 13 11 26 26 C 1.38234 * 120.00138 * 319.72711 * 25 14 13 27 27 C 1.38237 * 120.00069 * 179.78228 * 26 25 14 28 28 C 1.38241 * 119.99907 * 0.44937 * 27 26 25 29 29 C 1.38232 * 119.99454 * 359.80478 * 28 27 26 30 30 C 1.38231 * 120.00861 * 359.97438 * 29 28 27 31 31 H 1.08998 * 109.47245 * 299.99675 * 1 2 3 32 32 H 1.09002 * 109.47178 * 60.00541 * 1 2 3 33 33 H 1.09002 * 109.46714 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47245 * 240.00325 * 2 1 3 35 35 H 1.09011 * 109.46770 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.47449 * 299.99662 * 3 2 1 37 37 H 1.08998 * 109.47823 * 60.00475 * 3 2 1 38 38 H 0.97004 * 120.00211 * 335.00011 * 4 2 1 39 39 H 1.09002 * 109.47639 * 179.97438 * 9 7 5 40 40 H 1.09004 * 109.46891 * 299.99471 * 9 7 5 41 41 H 1.08999 * 109.47623 * 59.99926 * 9 7 5 42 42 H 0.97000 * 119.99254 * 25.00481 * 10 7 5 43 43 H 0.97002 * 120.00089 * 355.09443 * 13 11 10 44 44 H 1.09003 * 109.47418 * 305.72020 * 16 14 13 45 45 H 1.08999 * 109.47163 * 65.71923 * 16 14 13 46 46 H 0.97005 * 119.99963 * 179.97438 * 20 19 17 47 47 H 1.07999 * 119.99807 * 0.02562 * 26 25 14 48 48 H 1.07998 * 120.00023 * 180.27498 * 27 26 25 49 49 H 1.07998 * 119.99607 * 179.82723 * 28 27 26 50 50 H 1.08010 * 119.99338 * 180.02562 * 29 28 27 51 51 H 1.07995 * 120.00335 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2403 -1.2590 1.1944 6 8 3.9355 -1.1992 0.2024 7 6 3.7429 -1.9689 2.4251 8 1 3.0704 -2.7910 2.6704 9 6 3.7945 -0.9854 3.5959 10 7 5.0857 -2.4966 2.1704 11 6 5.5401 -3.5515 2.8753 12 8 4.8338 -4.0686 3.7192 13 7 6.7775 -4.0333 2.6449 14 6 7.3124 -5.1095 3.4829 15 1 6.9319 -5.0022 4.4987 16 6 6.8770 -6.4620 2.9154 17 6 7.3068 -7.5616 3.8519 18 1 7.8994 -7.3273 4.7239 19 6 6.9434 -8.8668 3.5956 20 7 6.2223 -9.1521 2.5336 21 14 7.4769 -10.2299 4.7562 22 1 6.9333 -9.9659 6.1126 23 1 6.9619 -11.5315 4.2607 24 1 8.9599 -10.2757 4.8175 25 6 8.8173 -5.0327 3.4993 26 6 9.5069 -4.7349 2.3388 27 6 10.8871 -4.6600 2.3549 28 6 11.5783 -4.8920 3.5295 29 6 10.8889 -5.1950 4.6887 30 6 9.5084 -5.2654 4.6737 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9564 0.8900 38 1 1.4622 -0.7387 1.9895 39 1 4.1576 -1.4989 4.4862 40 1 4.4670 -0.1634 3.3505 41 1 2.7953 -0.5932 3.7853 42 1 5.6492 -2.0840 1.4972 43 1 7.3140 -3.6676 1.9243 44 1 5.7923 -6.4791 2.8085 45 1 7.3405 -6.6132 1.9405 46 1 5.9670 -10.0704 2.3530 47 1 8.9671 -4.5569 1.4205 48 1 11.4256 -4.4229 1.4493 49 1 12.6568 -4.8362 3.5413 50 1 11.4289 -5.3759 5.6064 51 1 8.9699 -5.5025 5.5792 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413412889.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:55 Heat of formation + Delta-G solvation = -53.141163 kcal Electronic energy + Delta-G solvation = -30475.002333 eV Core-core repulsion = 26373.851179 eV Total energy + Delta-G solvation = -4101.151154 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.50688 -39.55314 -38.59145 -36.41055 -35.42240 -34.44454 -32.84999 -32.18357 -31.10557 -30.43083 -29.58450 -28.41001 -27.60322 -25.14569 -24.38466 -22.35393 -22.11256 -21.74358 -20.82892 -20.27689 -19.64805 -18.64551 -17.23854 -16.73625 -16.45369 -15.93101 -15.60720 -15.48048 -14.86429 -14.72266 -14.57792 -14.48243 -14.36123 -14.02162 -13.62553 -13.44442 -13.38200 -12.92107 -12.83063 -12.71667 -12.68357 -12.49036 -12.47746 -12.39818 -12.06651 -11.75705 -11.72610 -11.44849 -11.33530 -11.08274 -10.78865 -10.72128 -10.59306 -10.02982 -9.99174 -9.83635 -9.73684 -9.41903 -9.09075 -8.96682 -8.44147 -8.42553 -8.27193 -7.96205 -5.93014 -3.94351 1.84689 1.88180 2.39011 2.62993 3.23236 3.38686 3.42343 3.44976 3.68404 4.28013 4.34624 4.49488 4.54497 4.67352 4.71314 4.87144 4.97471 5.08570 5.18236 5.29294 5.30198 5.32046 5.39225 5.40707 5.41626 5.44597 5.56126 5.56183 5.66894 5.73484 5.87826 5.95149 6.02152 6.03209 6.18284 6.22254 6.42410 6.54246 6.59023 6.80294 6.88027 6.92876 6.96458 7.17288 7.19744 7.27971 7.47223 7.74630 7.83862 7.93501 8.06616 8.43302 8.45093 9.04474 9.12191 9.68075 11.18674 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011370 B = 0.002555 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.994146 B =10958.084661 C =12541.856421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.135 3.865 3 C -0.163 4.163 4 N -0.724 5.724 5 C 0.515 3.485 6 O -0.534 6.534 7 C 0.146 3.854 8 H 0.115 0.885 9 C -0.158 4.158 10 N -0.737 5.737 11 C 0.708 3.292 12 O -0.583 6.583 13 N -0.735 5.735 14 C 0.199 3.801 15 H 0.088 0.912 16 C 0.025 3.975 17 C -0.512 4.512 18 H 0.058 0.942 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.890 3.110 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.049 4.049 26 C -0.118 4.118 27 C -0.122 4.122 28 C -0.135 4.135 29 C -0.121 4.121 30 C -0.099 4.099 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.402 0.598 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.401 0.599 43 H 0.388 0.612 44 H 0.033 0.967 45 H 0.014 0.986 46 H 0.260 0.740 47 H 0.115 0.885 48 H 0.114 0.886 49 H 0.113 0.887 50 H 0.116 0.884 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.732 21.578 -2.342 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 C -0.222 4.222 4 N -0.377 5.377 5 C 0.300 3.700 6 O -0.410 6.410 7 C 0.036 3.964 8 H 0.133 0.867 9 C -0.217 4.217 10 N -0.396 5.396 11 C 0.407 3.593 12 O -0.460 6.460 13 N -0.389 5.389 14 C 0.096 3.904 15 H 0.106 0.894 16 C -0.013 4.013 17 C -0.551 4.551 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.718 3.282 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.049 4.049 26 C -0.137 4.137 27 C -0.140 4.140 28 C -0.153 4.153 29 C -0.139 4.139 30 C -0.117 4.117 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.237 0.763 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.237 0.763 43 H 0.222 0.778 44 H 0.051 0.949 45 H 0.033 0.967 46 H 0.070 0.930 47 H 0.133 0.867 48 H 0.133 0.867 49 H 0.131 0.869 50 H 0.134 0.866 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.959 20.976 -2.367 21.684 hybrid contribution 0.499 -0.657 0.161 0.840 sum -4.460 20.319 -2.206 20.919 Atomic orbital electron populations 1.22084 0.93993 1.02871 1.02940 1.20960 0.94061 0.93022 0.88872 1.22185 1.02189 0.95715 1.02063 1.46047 1.17757 1.56910 1.17001 1.20786 0.81535 0.78110 0.89544 1.90696 1.56205 1.59285 1.34826 1.20477 0.86329 0.97497 0.92057 0.86691 1.22159 1.02314 0.98839 0.98386 1.44809 1.16322 1.34545 1.43874 1.15806 0.82326 0.79472 0.81661 1.90939 1.56600 1.61509 1.36967 1.45413 1.15545 1.40573 1.37356 1.20194 0.87306 0.87866 0.95039 0.89406 1.19432 0.97732 0.88111 0.96072 1.21048 1.33067 0.91582 1.09357 0.92391 1.24954 0.95143 0.98739 0.95338 1.69962 1.37477 1.19229 1.26640 0.86691 0.78906 0.81306 0.81334 1.20186 1.21394 1.20269 1.19979 0.95568 0.96105 0.93278 1.20845 0.94132 1.01151 0.97539 1.20981 0.94209 1.01102 0.97698 1.20976 0.99153 1.01932 0.93282 1.21037 0.94314 1.00578 0.98016 1.20980 0.93950 0.98855 0.97954 0.91990 0.90893 0.91767 0.89330 0.92032 0.91644 0.92450 0.76336 0.90289 0.92088 0.91516 0.76300 0.77787 0.94891 0.96734 0.93047 0.86714 0.86744 0.86908 0.86636 0.85992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 9.38 37.16 0.35 -0.46 16 2 C 0.14 1.00 3.18 -67.93 -0.22 0.79 16 3 C -0.16 -1.11 9.48 37.16 0.35 -0.76 16 4 N -0.72 -5.82 4.97 -53.81 -0.27 -6.08 16 5 C 0.51 5.91 7.19 -10.99 -0.08 5.83 16 6 O -0.53 -7.86 15.50 5.55 0.09 -7.78 16 7 C 0.15 1.77 2.98 -69.08 -0.21 1.57 16 8 H 0.12 1.52 7.58 -51.93 -0.39 1.13 16 9 C -0.16 -1.53 9.38 37.16 0.35 -1.18 16 10 N -0.74 -10.66 4.96 -59.81 -0.30 -10.95 16 11 C 0.71 13.08 8.50 -86.92 -0.74 12.34 16 12 O -0.58 -13.06 15.70 5.29 0.08 -12.97 16 13 N -0.74 -13.20 5.02 -59.81 -0.30 -13.50 16 14 C 0.20 4.21 2.19 -69.08 -0.15 4.06 16 15 H 0.09 2.00 7.46 -51.93 -0.39 1.61 16 16 C 0.02 0.65 4.73 -27.89 -0.13 0.51 16 17 C -0.51 -14.46 8.64 -34.44 -0.30 -14.76 16 18 H 0.06 1.57 6.43 -52.48 -0.34 1.23 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -27.49 13.29 55.43 0.74 -26.75 16 21 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C -0.05 -0.92 4.49 -104.63 -0.47 -1.39 16 26 C -0.12 -2.00 9.06 -39.58 -0.36 -2.35 16 27 C -0.12 -1.83 10.05 -39.58 -0.40 -2.22 16 28 C -0.14 -1.98 10.05 -39.58 -0.40 -2.37 16 29 C -0.12 -1.89 10.05 -39.59 -0.40 -2.29 16 30 C -0.10 -1.78 8.63 -39.58 -0.34 -2.12 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.84 7.58 -51.93 -0.39 0.45 16 35 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.40 2.22 8.02 -40.82 -0.33 1.90 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.45 7.56 -51.93 -0.39 0.05 16 42 H 0.40 5.31 7.81 -40.82 -0.32 4.99 16 43 H 0.39 5.87 6.91 -40.82 -0.28 5.59 16 44 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.01 0.40 8.13 -51.93 -0.42 -0.02 16 46 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.11 1.77 6.91 -52.49 -0.36 1.41 16 48 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 49 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 50 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 51 H 0.12 2.15 7.83 -52.49 -0.41 1.74 16 LS Contribution 421.71 15.07 6.36 6.36 Total: -1.00 -35.96 421.71 -10.09 -46.05 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -8.24 Total: 11.66 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -3.23 Total: -3.17 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.13 Total: -57.29 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: 0.17 Total: -20.75 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -35.96 -10.09 -46.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413412889.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.090 kcal (2) G-P(sol) polarization free energy of solvation -35.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds