Wall clock time and date at job start Wed Apr 1 2020 05:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46487 * 2 1 4 4 N 1.46500 * 109.46915 * 119.99906 * 2 1 3 5 5 C 1.34772 * 119.99808 * 155.00629 * 4 2 1 6 6 O 1.21285 * 120.00017 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00189 * 179.97438 * 5 4 2 8 8 H 1.09004 * 109.47155 * 59.99842 * 7 5 4 9 9 C 1.52996 * 109.47125 * 299.99903 * 7 5 4 10 10 N 1.46503 * 109.47463 * 179.97438 * 7 5 4 11 11 C 1.34770 * 120.00224 * 204.72300 * 10 7 5 12 12 O 1.21586 * 120.00158 * 0.27639 * 11 10 7 13 13 N 1.34777 * 120.00114 * 180.27908 * 11 10 7 14 14 C 1.46503 * 120.00265 * 175.09536 * 13 11 10 15 15 H 1.09002 * 109.46970 * 326.59411 * 14 13 11 16 16 C 1.53000 * 109.47047 * 86.59315 * 14 13 11 17 17 C 1.50694 * 109.47317 * 185.72081 * 16 14 13 18 18 H 1.08004 * 119.99758 * 355.55099 * 17 16 14 19 19 C 1.37881 * 120.00265 * 175.55158 * 17 16 14 20 20 N 1.31508 * 119.99837 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99994 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46883 * 60.00042 * 21 19 17 23 23 H 1.48492 * 109.46862 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47057 * 300.00380 * 21 19 17 25 25 C 1.50695 * 109.47277 * 206.59226 * 14 13 11 26 26 C 1.38234 * 120.00138 * 319.72711 * 25 14 13 27 27 C 1.38237 * 120.00069 * 179.78228 * 26 25 14 28 28 C 1.38241 * 119.99907 * 0.44937 * 27 26 25 29 29 C 1.38232 * 119.99454 * 359.80478 * 28 27 26 30 30 C 1.38231 * 120.00861 * 359.97438 * 29 28 27 31 31 H 1.08998 * 109.47245 * 299.99675 * 1 2 3 32 32 H 1.09002 * 109.47178 * 60.00541 * 1 2 3 33 33 H 1.09002 * 109.46714 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47245 * 240.00325 * 2 1 3 35 35 H 1.09011 * 109.46770 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.47449 * 299.99662 * 3 2 1 37 37 H 1.08998 * 109.47823 * 60.00475 * 3 2 1 38 38 H 0.97004 * 120.00211 * 335.00011 * 4 2 1 39 39 H 1.09002 * 109.47639 * 179.97438 * 9 7 5 40 40 H 1.09004 * 109.46891 * 299.99471 * 9 7 5 41 41 H 1.08999 * 109.47623 * 59.99926 * 9 7 5 42 42 H 0.97000 * 119.99254 * 25.00481 * 10 7 5 43 43 H 0.97002 * 120.00089 * 355.09443 * 13 11 10 44 44 H 1.09003 * 109.47418 * 305.72020 * 16 14 13 45 45 H 1.08999 * 109.47163 * 65.71923 * 16 14 13 46 46 H 0.97005 * 119.99963 * 179.97438 * 20 19 17 47 47 H 1.07999 * 119.99807 * 0.02562 * 26 25 14 48 48 H 1.07998 * 120.00023 * 180.27498 * 27 26 25 49 49 H 1.07998 * 119.99607 * 179.82723 * 28 27 26 50 50 H 1.08010 * 119.99338 * 180.02562 * 29 28 27 51 51 H 1.07995 * 120.00335 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2403 -1.2590 1.1944 6 8 3.9355 -1.1992 0.2024 7 6 3.7429 -1.9689 2.4251 8 1 3.0704 -2.7910 2.6704 9 6 3.7945 -0.9854 3.5959 10 7 5.0857 -2.4966 2.1704 11 6 5.5401 -3.5515 2.8753 12 8 4.8338 -4.0686 3.7192 13 7 6.7775 -4.0333 2.6449 14 6 7.3124 -5.1095 3.4829 15 1 6.9319 -5.0022 4.4987 16 6 6.8770 -6.4620 2.9154 17 6 7.3068 -7.5616 3.8519 18 1 7.8994 -7.3273 4.7239 19 6 6.9434 -8.8668 3.5956 20 7 6.2223 -9.1521 2.5336 21 14 7.4769 -10.2299 4.7562 22 1 6.9333 -9.9659 6.1126 23 1 6.9619 -11.5315 4.2607 24 1 8.9599 -10.2757 4.8175 25 6 8.8173 -5.0327 3.4993 26 6 9.5069 -4.7349 2.3388 27 6 10.8871 -4.6600 2.3549 28 6 11.5783 -4.8920 3.5295 29 6 10.8889 -5.1950 4.6887 30 6 9.5084 -5.2654 4.6737 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9564 0.8900 38 1 1.4622 -0.7387 1.9895 39 1 4.1576 -1.4989 4.4862 40 1 4.4670 -0.1634 3.3505 41 1 2.7953 -0.5932 3.7853 42 1 5.6492 -2.0840 1.4972 43 1 7.3140 -3.6676 1.9243 44 1 5.7923 -6.4791 2.8085 45 1 7.3405 -6.6132 1.9405 46 1 5.9670 -10.0704 2.3530 47 1 8.9671 -4.5569 1.4205 48 1 11.4256 -4.4229 1.4493 49 1 12.6568 -4.8362 3.5413 50 1 11.4289 -5.3759 5.6064 51 1 8.9699 -5.5025 5.5792 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413412889.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:53 Heat of formation + Delta-G solvation = -78.447473 kcal Electronic energy + Delta-G solvation = -30476.099696 eV Core-core repulsion = 26373.851179 eV Total energy + Delta-G solvation = -4102.248518 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.66897 -40.83481 -39.90002 -37.28011 -36.79597 -35.84695 -34.87364 -33.35045 -32.34724 -31.66863 -30.66706 -30.23151 -28.08431 -26.74603 -25.59893 -23.95167 -23.57545 -22.67671 -21.85760 -21.35199 -21.21244 -19.98389 -18.71313 -18.11333 -17.69327 -17.25790 -16.76759 -16.68765 -16.48287 -16.07004 -15.96647 -15.79287 -15.35788 -15.15079 -14.95681 -14.62524 -14.54816 -14.20681 -14.14227 -14.06410 -13.84783 -13.57420 -13.37735 -13.16503 -13.13552 -13.03498 -12.89618 -12.70525 -12.62342 -12.48454 -12.30191 -12.00025 -11.91251 -11.86263 -11.62238 -11.46763 -11.18073 -10.99992 -10.54813 -10.36897 -10.18859 -9.84955 -9.69393 -9.43522 -8.17358 -6.26542 0.55324 0.61774 1.37945 1.42481 1.44492 1.48461 1.52023 2.12862 2.22953 2.42726 2.99608 3.17098 3.30053 3.56076 3.88301 3.95175 4.01960 4.06059 4.09948 4.17082 4.25654 4.32620 4.36167 4.50702 4.62565 4.73738 4.74543 4.76552 4.77255 4.82903 4.85229 4.93977 5.01694 5.16421 5.18016 5.23876 5.27083 5.32729 5.34190 5.39268 5.47688 5.49358 5.57051 5.65189 5.70021 5.76942 5.89878 6.00343 6.23448 6.24662 6.42499 6.86676 7.04426 7.10938 7.40586 7.58434 8.95231 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011370 B = 0.002555 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.994146 B =10958.084661 C =12541.856421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.131 3.869 3 C -0.158 4.158 4 N -0.706 5.706 5 C 0.519 3.481 6 O -0.570 6.570 7 C 0.140 3.860 8 H 0.102 0.898 9 C -0.149 4.149 10 N -0.724 5.724 11 C 0.704 3.296 12 O -0.626 6.626 13 N -0.728 5.728 14 C 0.218 3.782 15 H 0.064 0.936 16 C 0.039 3.961 17 C -0.523 4.523 18 H 0.068 0.932 19 C -0.001 4.001 20 N -0.936 5.936 21 Si 0.961 3.039 22 H -0.268 1.268 23 H -0.285 1.285 24 H -0.263 1.263 25 C -0.075 4.075 26 C -0.130 4.130 27 C -0.120 4.120 28 C -0.128 4.128 29 C -0.122 4.122 30 C -0.121 4.121 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.037 0.963 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.417 0.583 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.102 0.898 42 H 0.409 0.591 43 H 0.403 0.597 44 H -0.017 1.017 45 H -0.007 1.007 46 H 0.261 0.739 47 H 0.121 0.879 48 H 0.147 0.853 49 H 0.151 0.849 50 H 0.143 0.857 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.356 23.091 -1.764 23.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.027 3.973 3 C -0.216 4.216 4 N -0.359 5.359 5 C 0.304 3.696 6 O -0.450 6.450 7 C 0.031 3.969 8 H 0.120 0.880 9 C -0.207 4.207 10 N -0.382 5.382 11 C 0.404 3.596 12 O -0.507 6.507 13 N -0.382 5.382 14 C 0.113 3.887 15 H 0.082 0.918 16 C 0.000 4.000 17 C -0.561 4.561 18 H 0.086 0.914 19 C -0.198 4.198 20 N -0.576 5.576 21 Si 0.785 3.215 22 H -0.193 1.193 23 H -0.211 1.211 24 H -0.188 1.188 25 C -0.076 4.076 26 C -0.148 4.148 27 C -0.138 4.138 28 C -0.146 4.146 29 C -0.140 4.140 30 C -0.139 4.139 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.254 0.746 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.121 0.879 42 H 0.246 0.754 43 H 0.240 0.760 44 H 0.001 0.999 45 H 0.011 0.989 46 H 0.070 0.930 47 H 0.138 0.862 48 H 0.165 0.835 49 H 0.168 0.832 50 H 0.161 0.839 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.608 22.559 -1.800 22.917 hybrid contribution 0.049 -1.046 -0.077 1.050 sum -3.559 21.513 -1.878 21.886 Atomic orbital electron populations 1.22046 0.91633 1.03056 1.04428 1.21091 0.95807 0.93033 0.87394 1.22137 1.00610 0.95301 1.03555 1.45964 1.16503 1.55489 1.17958 1.20593 0.82324 0.78124 0.88548 1.90683 1.57495 1.60969 1.35811 1.20700 0.84727 0.97791 0.93668 0.88003 1.22096 1.04640 0.97979 0.96005 1.44706 1.17344 1.33139 1.42968 1.15980 0.82055 0.79984 0.81569 1.90900 1.57738 1.63049 1.39005 1.45183 1.15700 1.39851 1.37505 1.19597 0.89536 0.85956 0.93565 0.91788 1.19181 0.94211 0.91376 0.95185 1.21459 1.32721 0.92276 1.09692 0.91429 1.25934 0.95168 1.01638 0.97068 1.70121 1.38969 1.19802 1.28751 0.85563 0.79102 0.77728 0.79098 1.19253 1.21056 1.18783 1.19813 0.93733 0.99037 0.94969 1.21027 0.95482 1.01342 0.96971 1.21382 0.93284 0.99742 0.99370 1.21458 1.01065 0.99669 0.92379 1.21377 0.93207 0.99597 0.99819 1.21094 0.95442 0.99990 0.97393 0.90232 0.89678 0.92244 0.91795 0.94387 0.90265 0.90874 0.74591 0.92461 0.91269 0.87935 0.75387 0.76049 0.99878 0.98901 0.93031 0.86151 0.83522 0.83172 0.83878 0.86816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.38 71.98 0.68 -0.55 16 2 C 0.13 1.81 3.18 44.99 0.14 1.95 16 3 C -0.16 -1.92 9.48 71.98 0.68 -1.23 16 4 N -0.71 -10.68 4.97 -442.54 -2.20 -12.88 16 5 C 0.52 11.97 7.19 87.66 0.63 12.60 16 6 O -0.57 -17.21 15.50 -3.04 -0.05 -17.26 16 7 C 0.14 3.49 2.98 44.24 0.13 3.62 16 8 H 0.10 2.84 7.58 -2.38 -0.02 2.82 16 9 C -0.15 -2.80 9.38 71.98 0.68 -2.12 16 10 N -0.72 -21.90 4.96 -461.42 -2.29 -24.19 16 11 C 0.70 27.70 8.50 179.06 1.52 29.22 16 12 O -0.63 -30.05 15.70 -3.99 -0.06 -30.11 16 13 N -0.73 -27.73 5.02 -461.42 -2.32 -30.05 16 14 C 0.22 9.79 2.19 44.24 0.10 9.88 16 15 H 0.06 3.14 7.46 -2.39 -0.02 3.12 16 16 C 0.04 2.17 4.73 29.85 0.14 2.31 16 17 C -0.52 -30.67 8.64 25.60 0.22 -30.45 16 18 H 0.07 3.75 6.43 -2.91 -0.02 3.73 16 19 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 20 N -0.94 -59.73 13.29 21.45 0.28 -59.44 16 21 Si 0.96 46.07 29.54 68.60 2.03 48.10 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 24 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 25 C -0.07 -2.89 4.49 -19.87 -0.09 -2.98 16 26 C -0.13 -4.31 9.06 22.27 0.20 -4.11 16 27 C -0.12 -3.26 10.05 22.27 0.22 -3.04 16 28 C -0.13 -3.26 10.05 22.27 0.22 -3.04 16 29 C -0.12 -3.52 10.05 22.27 0.22 -3.29 16 30 C -0.12 -4.33 8.63 22.27 0.19 -4.13 16 31 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 34 H 0.06 1.23 7.58 -2.39 -0.02 1.21 16 35 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.42 3.84 8.02 -92.71 -0.74 3.10 16 39 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 41 H 0.10 1.16 7.56 -2.39 -0.02 1.15 16 42 H 0.41 11.20 7.81 -92.71 -0.72 10.48 16 43 H 0.40 12.73 6.91 -92.71 -0.64 12.09 16 44 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 45 H -0.01 -0.43 8.13 -2.39 -0.02 -0.45 16 46 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 47 H 0.12 3.72 6.91 -2.91 -0.02 3.70 16 48 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 49 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 50 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 51 H 0.11 4.12 7.83 -2.91 -0.02 4.10 16 Total: -1.00 -83.31 421.71 0.60 -82.71 By element: Atomic # 1 Polarization: 39.23 SS G_CDS: -1.16 Total: 38.08 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 6.36 Total: 5.06 kcal Atomic # 7 Polarization: -120.05 SS G_CDS: -6.52 Total: -126.56 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: -0.11 Total: -47.37 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -83.31 0.60 -82.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413412889.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.260 kcal (2) G-P(sol) polarization free energy of solvation -83.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds