Wall clock time and date at job start Wed Apr 1 2020 05:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46909 * 2 1 4 4 N 1.46500 * 109.47352 * 239.99565 * 2 1 3 5 5 C 1.34768 * 120.00033 * 85.00208 * 4 2 1 6 6 O 1.21588 * 120.00169 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00306 * 180.02562 * 5 4 2 8 8 C 1.46495 * 120.00541 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47630 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47437 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47179 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99858 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99702 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00351 * 359.97438 * 13 11 10 15 15 Si 1.86810 * 119.99739 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46883 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47007 * 119.99586 * 15 13 11 18 18 H 1.48501 * 109.46841 * 239.99855 * 15 13 11 19 19 C 1.50706 * 109.46779 * 119.99417 * 2 1 3 20 20 O 1.21281 * 119.99699 * 119.99828 * 19 2 1 21 21 N 1.34773 * 120.00080 * 300.00319 * 19 2 1 22 22 C 1.46506 * 119.99969 * 180.02562 * 21 19 2 23 23 C 1.52998 * 109.47237 * 179.72043 * 22 21 19 24 24 C 1.50696 * 109.46969 * 179.97438 * 23 22 21 25 25 C 1.38237 * 120.00522 * 269.72885 * 24 23 22 26 26 C 1.38229 * 119.99892 * 179.76973 * 25 24 23 27 27 C 1.38238 * 120.00219 * 0.50252 * 26 25 24 28 28 C 1.38227 * 119.99878 * 359.75110 * 27 26 25 29 29 C 1.38235 * 120.00089 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.46837 * 60.00443 * 1 2 3 31 31 H 1.08993 * 109.47257 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47281 * 300.00632 * 1 2 3 33 33 H 0.97000 * 119.99631 * 265.00471 * 4 2 1 34 34 H 0.97008 * 119.99757 * 359.97438 * 7 5 4 35 35 H 1.08999 * 109.47054 * 300.00082 * 8 7 5 36 36 H 1.09007 * 109.47309 * 59.99387 * 8 7 5 37 37 H 1.08999 * 109.47015 * 300.00162 * 9 8 7 38 38 H 1.09004 * 109.46730 * 59.99486 * 9 8 7 39 39 H 1.08999 * 109.47213 * 300.00118 * 10 9 8 40 40 H 1.09006 * 109.46848 * 59.99725 * 10 9 8 41 41 H 0.97007 * 120.00199 * 179.97438 * 14 13 11 42 42 H 0.97005 * 120.00161 * 359.72088 * 21 19 2 43 43 H 1.09001 * 109.46512 * 299.72412 * 22 21 19 44 44 H 1.08998 * 109.47174 * 59.71534 * 22 21 19 45 45 H 1.09000 * 109.46986 * 299.99958 * 23 22 21 46 46 H 1.09002 * 109.46857 * 60.00093 * 23 22 21 47 47 H 1.07995 * 119.99542 * 359.97438 * 25 24 23 48 48 H 1.08004 * 119.99919 * 180.22696 * 26 25 24 49 49 H 1.08003 * 119.99807 * 179.72193 * 27 26 25 50 50 H 1.08006 * 120.00194 * 179.97438 * 28 27 26 51 51 H 1.08003 * 120.00132 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0185 -2.3570 6 8 1.8576 1.1612 -2.4119 7 7 2.5960 -0.6539 -3.4576 8 6 2.7355 0.0766 -4.7197 9 6 3.2600 -0.8696 -5.8015 10 6 3.4051 -0.1068 -7.1198 11 6 3.9223 -1.0387 -8.1852 12 1 4.1267 -2.0718 -7.9460 13 6 4.1346 -0.5723 -9.4651 14 7 3.8852 0.6856 -9.7565 15 14 4.7751 -1.7277 -10.7860 16 1 4.9737 -3.0805 -10.2064 17 1 3.7919 -1.8038 -11.8962 18 1 6.0694 -1.2171 -11.3049 19 6 2.0323 -0.7103 1.2306 20 8 2.7295 -1.6965 1.1194 21 7 1.7066 -0.2498 2.4546 22 6 2.1954 -0.9400 3.6509 23 6 1.6909 -0.2147 4.9001 24 6 2.1932 -0.9251 6.1305 25 6 1.4408 -1.9345 6.7015 26 6 1.9038 -2.5892 7.8274 27 6 3.1144 -2.2276 8.3885 28 6 3.8643 -1.2148 7.8206 29 6 3.4034 -0.5631 6.6920 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2491 -1.6319 -1.1524 34 1 2.8267 -1.5952 -3.4139 35 1 1.7648 0.4706 -5.0206 36 1 3.4367 0.9006 -4.5870 37 1 4.2308 -1.2632 -5.5003 38 1 2.5591 -1.6939 -5.9342 39 1 2.4341 0.2865 -7.4207 40 1 4.1057 0.7177 -6.9872 41 1 4.0349 1.0139 -10.6570 42 1 1.1523 0.5413 2.5436 43 1 1.8284 -1.9664 3.6535 44 1 3.2853 -0.9440 3.6483 45 1 2.0580 0.8116 4.8973 46 1 0.6009 -0.2109 4.9026 47 1 0.4928 -2.2137 6.2660 48 1 1.3177 -3.3803 8.2714 49 1 3.4740 -2.7362 9.2708 50 1 4.8099 -0.9320 8.2592 51 1 3.9892 0.2286 6.2485 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454438591.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:53 Heat of formation + Delta-G solvation = -66.202510 kcal Electronic energy + Delta-G solvation = -28195.021315 eV Core-core repulsion = 24093.303778 eV Total energy + Delta-G solvation = -4101.717536 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.66935 -39.85077 -39.33924 -36.14359 -35.66234 -34.76589 -33.39569 -33.19581 -31.53694 -31.39468 -30.31229 -28.75517 -26.59921 -25.18262 -23.77680 -23.09280 -22.81621 -21.62035 -20.91240 -20.59930 -20.27534 -18.64032 -17.30812 -17.23842 -16.59725 -16.33629 -16.30422 -15.86084 -15.60225 -15.37546 -15.28747 -14.61624 -14.49743 -14.37544 -14.03600 -13.96259 -13.79718 -13.62706 -13.55318 -13.35208 -12.90133 -12.65682 -12.35997 -12.26358 -12.07856 -11.94338 -11.77117 -11.64160 -11.61325 -11.44548 -10.89974 -10.69501 -10.54489 -10.22902 -10.12624 -9.82935 -9.59187 -9.42245 -9.41678 -9.28818 -9.22680 -9.08457 -8.60501 -8.35066 -5.99610 -4.02397 0.80862 0.89822 2.19662 2.40197 2.98961 3.27516 3.31817 3.36308 3.39304 3.43161 4.13769 4.24886 4.30961 4.37780 4.46721 4.49050 4.55040 4.59853 4.63738 4.77325 4.87219 4.96280 5.00408 5.04025 5.23848 5.33042 5.36411 5.42476 5.48304 5.52610 5.54606 5.74110 5.84804 5.86665 5.89006 5.96670 6.02525 6.07732 6.21455 6.33282 6.48987 6.55877 6.66047 6.83620 6.97780 7.05445 7.10424 7.66910 7.72994 7.79626 7.99670 8.16242 8.40874 8.74197 9.04593 9.61819 11.11749 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026886 B = 0.001233 C = 0.001206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.194547 B =22708.594117 C =23219.515290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.147 3.853 3 H 0.115 0.885 4 N -0.736 5.736 5 C 0.705 3.295 6 O -0.595 6.595 7 N -0.739 5.739 8 C 0.135 3.865 9 C -0.121 4.121 10 C 0.024 3.976 11 C -0.521 4.521 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.513 3.487 20 O -0.532 6.532 21 N -0.728 5.728 22 C 0.125 3.875 23 C -0.092 4.092 24 C -0.083 4.083 25 C -0.114 4.114 26 C -0.119 4.119 27 C -0.122 4.122 28 C -0.118 4.118 29 C -0.114 4.114 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.404 0.596 34 H 0.395 0.605 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.260 0.740 42 H 0.403 0.597 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.123 0.877 48 H 0.122 0.878 49 H 0.121 0.879 50 H 0.123 0.877 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.163 -3.305 39.218 40.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.133 0.867 4 N -0.394 5.394 5 C 0.405 3.595 6 O -0.473 6.473 7 N -0.393 5.393 8 C 0.012 3.988 9 C -0.159 4.159 10 C -0.014 4.014 11 C -0.560 4.560 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C 0.298 3.702 20 O -0.408 6.408 21 N -0.381 5.381 22 C 0.002 3.998 23 C -0.130 4.130 24 C -0.083 4.083 25 C -0.132 4.132 26 C -0.137 4.137 27 C -0.140 4.140 28 C -0.136 4.136 29 C -0.132 4.132 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.240 0.760 34 H 0.229 0.771 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.070 0.930 42 H 0.238 0.762 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.141 0.859 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.141 0.859 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.901 -2.805 38.903 39.610 hybrid contribution 0.368 -1.097 -0.609 1.308 sum -6.533 -3.902 38.294 39.043 Atomic orbital electron populations 1.22175 0.93030 1.03026 1.03644 1.20493 0.95343 0.97861 0.82615 0.86716 1.44816 1.72443 1.14297 1.07860 1.15904 0.78430 0.85011 0.80194 1.90908 1.57438 1.14288 1.84678 1.45364 1.70227 1.14021 1.09653 1.21524 1.01284 0.95236 0.80723 1.21899 0.99746 0.98221 0.96054 1.19033 0.97501 0.95496 0.89365 1.21252 1.43736 0.96448 0.94519 0.92589 1.25020 0.95643 0.95081 0.98677 1.69976 1.48880 1.14195 1.20261 0.86540 0.78550 0.81098 0.81824 1.19749 1.21014 1.21020 1.20754 0.79949 0.84660 0.84810 1.90722 1.37306 1.26154 1.86577 1.45912 1.54462 1.32364 1.05396 1.21342 0.99807 0.96385 0.82311 1.20787 1.01667 0.99409 0.91122 1.19640 0.95191 0.97076 0.96441 1.21089 0.99911 0.95947 0.96251 1.21179 0.96434 0.99789 0.96277 1.21206 0.95092 0.97595 1.00104 1.21185 0.99888 0.96368 0.96197 1.21107 0.95677 1.00153 0.96232 0.90248 0.91881 0.91348 0.75972 0.77117 0.91887 0.91920 0.92714 0.92730 0.96233 0.96235 0.93009 0.76173 0.91082 0.91088 0.90005 0.90032 0.85940 0.85963 0.86062 0.85939 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.38 37.16 0.35 -0.90 16 2 C 0.15 1.43 2.98 -69.08 -0.21 1.23 16 3 H 0.12 1.17 7.58 -51.93 -0.39 0.78 16 4 N -0.74 -8.87 4.96 -59.81 -0.30 -9.17 16 5 C 0.70 10.97 8.53 -86.93 -0.74 10.23 16 6 O -0.59 -11.28 16.01 5.29 0.08 -11.19 16 7 N -0.74 -11.17 5.56 -65.23 -0.36 -11.53 16 8 C 0.14 2.45 5.67 -4.04 -0.02 2.43 16 9 C -0.12 -2.42 5.27 -26.73 -0.14 -2.56 16 10 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 11 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 15 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 C 0.51 4.86 7.22 -10.98 -0.08 4.78 16 20 O -0.53 -6.97 15.84 5.56 0.09 -6.88 16 21 N -0.73 -4.35 5.45 -60.29 -0.33 -4.68 16 22 C 0.13 0.74 5.66 -4.04 -0.02 0.72 16 23 C -0.09 -0.35 5.46 -27.89 -0.15 -0.50 16 24 C -0.08 -0.45 5.13 -104.62 -0.54 -0.99 16 25 C -0.11 -0.62 9.70 -39.59 -0.38 -1.00 16 26 C -0.12 -0.64 10.05 -39.58 -0.40 -1.04 16 27 C -0.12 -0.66 10.05 -39.59 -0.40 -1.05 16 28 C -0.12 -0.65 10.05 -39.59 -0.40 -1.05 16 29 C -0.11 -0.64 9.70 -39.58 -0.38 -1.03 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.33 7.57 -51.93 -0.39 -0.07 16 33 H 0.40 4.50 7.80 -40.82 -0.32 4.18 16 34 H 0.40 4.97 8.49 -40.82 -0.35 4.63 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.40 1.28 7.90 -40.82 -0.32 0.96 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.24 8.09 -51.93 -0.42 -0.18 16 46 H 0.08 0.22 8.08 -51.93 -0.42 -0.20 16 47 H 0.12 0.49 8.06 -52.49 -0.42 0.06 16 48 H 0.12 0.44 8.06 -52.48 -0.42 0.02 16 49 H 0.12 0.44 8.06 -52.48 -0.42 0.01 16 50 H 0.12 0.47 8.06 -52.48 -0.42 0.05 16 51 H 0.12 0.54 8.06 -52.48 -0.42 0.11 16 LS Contribution 429.61 15.07 6.47 6.47 Total: -1.00 -35.89 429.61 -11.19 -47.08 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -8.50 Total: 3.24 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -4.07 Total: -3.73 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.25 Total: -51.63 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.17 Total: -18.08 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.47 Total: 6.47 kcal Total: -35.89 -11.19 -47.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454438591.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.120 kcal (2) G-P(sol) polarization free energy of solvation -35.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds