Wall clock time and date at job start Wed Apr 1 2020 05:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46909 * 2 1 4 4 N 1.46500 * 109.47352 * 239.99565 * 2 1 3 5 5 C 1.34768 * 120.00033 * 85.00208 * 4 2 1 6 6 O 1.21588 * 120.00169 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00306 * 180.02562 * 5 4 2 8 8 C 1.46495 * 120.00541 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47630 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47437 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47179 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99858 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99702 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00351 * 359.97438 * 13 11 10 15 15 Si 1.86810 * 119.99739 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46883 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47007 * 119.99586 * 15 13 11 18 18 H 1.48501 * 109.46841 * 239.99855 * 15 13 11 19 19 C 1.50706 * 109.46779 * 119.99417 * 2 1 3 20 20 O 1.21281 * 119.99699 * 119.99828 * 19 2 1 21 21 N 1.34773 * 120.00080 * 300.00319 * 19 2 1 22 22 C 1.46506 * 119.99969 * 180.02562 * 21 19 2 23 23 C 1.52998 * 109.47237 * 179.72043 * 22 21 19 24 24 C 1.50696 * 109.46969 * 179.97438 * 23 22 21 25 25 C 1.38237 * 120.00522 * 269.72885 * 24 23 22 26 26 C 1.38229 * 119.99892 * 179.76973 * 25 24 23 27 27 C 1.38238 * 120.00219 * 0.50252 * 26 25 24 28 28 C 1.38227 * 119.99878 * 359.75110 * 27 26 25 29 29 C 1.38235 * 120.00089 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.46837 * 60.00443 * 1 2 3 31 31 H 1.08993 * 109.47257 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47281 * 300.00632 * 1 2 3 33 33 H 0.97000 * 119.99631 * 265.00471 * 4 2 1 34 34 H 0.97008 * 119.99757 * 359.97438 * 7 5 4 35 35 H 1.08999 * 109.47054 * 300.00082 * 8 7 5 36 36 H 1.09007 * 109.47309 * 59.99387 * 8 7 5 37 37 H 1.08999 * 109.47015 * 300.00162 * 9 8 7 38 38 H 1.09004 * 109.46730 * 59.99486 * 9 8 7 39 39 H 1.08999 * 109.47213 * 300.00118 * 10 9 8 40 40 H 1.09006 * 109.46848 * 59.99725 * 10 9 8 41 41 H 0.97007 * 120.00199 * 179.97438 * 14 13 11 42 42 H 0.97005 * 120.00161 * 359.72088 * 21 19 2 43 43 H 1.09001 * 109.46512 * 299.72412 * 22 21 19 44 44 H 1.08998 * 109.47174 * 59.71534 * 22 21 19 45 45 H 1.09000 * 109.46986 * 299.99958 * 23 22 21 46 46 H 1.09002 * 109.46857 * 60.00093 * 23 22 21 47 47 H 1.07995 * 119.99542 * 359.97438 * 25 24 23 48 48 H 1.08004 * 119.99919 * 180.22696 * 26 25 24 49 49 H 1.08003 * 119.99807 * 179.72193 * 27 26 25 50 50 H 1.08006 * 120.00194 * 179.97438 * 28 27 26 51 51 H 1.08003 * 120.00132 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0185 -2.3570 6 8 1.8576 1.1612 -2.4119 7 7 2.5960 -0.6539 -3.4576 8 6 2.7355 0.0766 -4.7197 9 6 3.2600 -0.8696 -5.8015 10 6 3.4051 -0.1068 -7.1198 11 6 3.9223 -1.0387 -8.1852 12 1 4.1267 -2.0718 -7.9460 13 6 4.1346 -0.5723 -9.4651 14 7 3.8852 0.6856 -9.7565 15 14 4.7751 -1.7277 -10.7860 16 1 4.9737 -3.0805 -10.2064 17 1 3.7919 -1.8038 -11.8962 18 1 6.0694 -1.2171 -11.3049 19 6 2.0323 -0.7103 1.2306 20 8 2.7295 -1.6965 1.1194 21 7 1.7066 -0.2498 2.4546 22 6 2.1954 -0.9400 3.6509 23 6 1.6909 -0.2147 4.9001 24 6 2.1932 -0.9251 6.1305 25 6 1.4408 -1.9345 6.7015 26 6 1.9038 -2.5892 7.8274 27 6 3.1144 -2.2276 8.3885 28 6 3.8643 -1.2148 7.8206 29 6 3.4034 -0.5631 6.6920 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2491 -1.6319 -1.1524 34 1 2.8267 -1.5952 -3.4139 35 1 1.7648 0.4706 -5.0206 36 1 3.4367 0.9006 -4.5870 37 1 4.2308 -1.2632 -5.5003 38 1 2.5591 -1.6939 -5.9342 39 1 2.4341 0.2865 -7.4207 40 1 4.1057 0.7177 -6.9872 41 1 4.0349 1.0139 -10.6570 42 1 1.1523 0.5413 2.5436 43 1 1.8284 -1.9664 3.6535 44 1 3.2853 -0.9440 3.6483 45 1 2.0580 0.8116 4.8973 46 1 0.6009 -0.2109 4.9026 47 1 0.4928 -2.2137 6.2660 48 1 1.3177 -3.3803 8.2714 49 1 3.4740 -2.7362 9.2708 50 1 4.8099 -0.9320 8.2592 51 1 3.9892 0.2286 6.2485 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454438591.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:52 Heat of formation + Delta-G solvation = -90.548092 kcal Electronic energy + Delta-G solvation = -28196.077018 eV Core-core repulsion = 24093.303778 eV Total energy + Delta-G solvation = -4102.773240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.58091 -40.57675 -40.06513 -37.19854 -36.61425 -35.93704 -35.18455 -33.84902 -33.10137 -31.75462 -31.42328 -29.26621 -28.37793 -25.92754 -24.98850 -23.99130 -23.45913 -22.28888 -22.07944 -21.86233 -21.24599 -19.73388 -18.59080 -18.00593 -17.76819 -17.31539 -16.97647 -16.76653 -16.68098 -16.43517 -16.05925 -15.92026 -15.59369 -15.38534 -15.33819 -14.82605 -14.52021 -14.25668 -14.21658 -13.95240 -13.81699 -13.75779 -13.70181 -13.46761 -13.27890 -12.78302 -12.75893 -12.64306 -12.53692 -12.43408 -12.32731 -11.97562 -11.78696 -11.66222 -11.65492 -11.30818 -11.14271 -11.03676 -10.54700 -10.43721 -10.19945 -9.84737 -9.80352 -9.62433 -8.18475 -6.29634 0.42449 0.51518 1.42165 1.42342 1.43994 1.47911 1.55866 2.06859 2.21099 2.42931 2.88767 3.15501 3.26451 3.54625 3.92035 3.94353 4.02529 4.06428 4.12292 4.18194 4.19553 4.23338 4.25626 4.31592 4.58087 4.58839 4.64186 4.65221 4.65639 4.79304 4.95322 4.97911 4.99544 5.00297 5.18217 5.18800 5.19485 5.21663 5.32421 5.37039 5.47709 5.55406 5.59089 5.65280 5.70465 5.73074 5.85859 5.93984 6.13661 6.24453 6.40245 6.87586 7.02291 7.09090 7.39925 7.52609 8.93875 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026886 B = 0.001233 C = 0.001206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.194547 B =22708.594117 C =23219.515290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.143 3.857 3 H 0.112 0.888 4 N -0.725 5.725 5 C 0.704 3.296 6 O -0.631 6.631 7 N -0.731 5.731 8 C 0.151 3.849 9 C -0.102 4.102 10 C 0.024 3.976 11 C -0.541 4.541 12 H 0.065 0.935 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.966 3.034 16 H -0.260 1.260 17 H -0.279 1.279 18 H -0.280 1.280 19 C 0.517 3.483 20 O -0.571 6.571 21 N -0.708 5.708 22 C 0.129 3.871 23 C -0.081 4.081 24 C -0.092 4.092 25 C -0.125 4.125 26 C -0.131 4.131 27 C -0.134 4.134 28 C -0.132 4.132 29 C -0.128 4.128 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.411 0.589 34 H 0.410 0.590 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.065 0.935 38 H 0.067 0.933 39 H -0.006 1.006 40 H -0.007 1.007 41 H 0.263 0.737 42 H 0.420 0.580 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.136 0.864 48 H 0.136 0.864 49 H 0.135 0.865 50 H 0.134 0.866 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.645 -4.555 40.576 41.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.034 3.966 3 H 0.129 0.871 4 N -0.382 5.382 5 C 0.404 3.596 6 O -0.512 6.512 7 N -0.386 5.386 8 C 0.026 3.974 9 C -0.140 4.140 10 C -0.014 4.014 11 C -0.579 4.579 12 H 0.083 0.917 13 C -0.199 4.199 14 N -0.575 5.575 15 Si 0.790 3.210 16 H -0.183 1.183 17 H -0.205 1.205 18 H -0.206 1.206 19 C 0.303 3.697 20 O -0.451 6.451 21 N -0.361 5.361 22 C 0.005 3.995 23 C -0.119 4.119 24 C -0.093 4.093 25 C -0.143 4.143 26 C -0.149 4.149 27 C -0.152 4.152 28 C -0.150 4.150 29 C -0.146 4.146 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.248 0.752 34 H 0.246 0.754 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.013 0.987 40 H 0.011 0.989 41 H 0.072 0.928 42 H 0.258 0.742 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.112 0.888 46 H 0.117 0.883 47 H 0.154 0.846 48 H 0.154 0.846 49 H 0.153 0.847 50 H 0.152 0.848 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.408 -4.073 40.332 41.208 hybrid contribution 0.508 -0.682 -0.927 1.258 sum -6.900 -4.754 39.405 40.286 Atomic orbital electron populations 1.22134 0.91170 1.03468 1.04369 1.20697 0.96725 0.97369 0.81829 0.87068 1.44745 1.71489 1.14506 1.07471 1.15977 0.78159 0.84598 0.80871 1.90885 1.59007 1.15963 1.85338 1.45059 1.70299 1.14570 1.08686 1.21098 1.00116 0.94576 0.81590 1.21603 1.00830 0.97945 0.93640 1.18940 0.95237 0.95085 0.92106 1.21713 1.43598 0.97173 0.95403 0.91682 1.25986 0.95814 0.96723 1.01368 1.70113 1.50056 1.16289 1.21020 0.85389 0.77835 0.79225 0.78526 1.18328 1.20495 1.20583 1.20646 0.79500 0.84071 0.85511 1.90712 1.39265 1.27955 1.87127 1.45755 1.53549 1.32404 1.04367 1.21306 0.98885 0.96311 0.82961 1.20728 1.02636 0.99404 0.89109 1.19842 0.95207 0.97283 0.96978 1.21354 1.00573 0.95987 0.96420 1.21461 0.96706 1.00241 0.96478 1.21475 0.95274 0.97753 1.00701 1.21445 1.00553 0.96566 0.96433 1.21349 0.96101 1.00630 0.96537 0.92344 0.91538 0.87798 0.75223 0.75379 0.93041 0.93349 0.91621 0.91403 0.98716 0.98858 0.92809 0.74200 0.92032 0.92696 0.88776 0.88273 0.84648 0.84597 0.84725 0.84811 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.38 71.98 0.68 -1.41 16 2 C 0.14 2.61 2.98 44.25 0.13 2.74 16 3 H 0.11 2.16 7.58 -2.39 -0.02 2.14 16 4 N -0.72 -16.84 4.96 -461.41 -2.29 -19.13 16 5 C 0.70 21.61 8.53 179.06 1.53 23.13 16 6 O -0.63 -24.01 16.01 -3.99 -0.06 -24.08 16 7 N -0.73 -21.57 5.56 -478.55 -2.66 -24.23 16 8 C 0.15 5.48 5.67 86.38 0.49 5.97 16 9 C -0.10 -4.03 5.27 30.59 0.16 -3.87 16 10 C 0.02 1.26 4.97 29.85 0.15 1.41 16 11 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 12 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 13 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 14 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 15 Si 0.97 44.21 29.54 68.60 2.03 46.23 16 16 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 19 C 0.52 9.09 7.22 87.66 0.63 9.72 16 20 O -0.57 -14.58 15.84 -3.03 -0.05 -14.62 16 21 N -0.71 -7.00 5.45 -463.05 -2.52 -9.52 16 22 C 0.13 1.35 5.66 86.38 0.49 1.84 16 23 C -0.08 -0.44 5.46 29.85 0.16 -0.28 16 24 C -0.09 -0.89 5.13 -19.87 -0.10 -0.99 16 25 C -0.13 -1.21 9.70 22.27 0.22 -1.00 16 26 C -0.13 -1.29 10.05 22.27 0.22 -1.07 16 27 C -0.13 -1.35 10.05 22.27 0.22 -1.13 16 28 C -0.13 -1.38 10.05 22.27 0.22 -1.16 16 29 C -0.13 -1.35 9.70 22.27 0.22 -1.13 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 0.65 7.57 -2.39 -0.02 0.64 16 33 H 0.41 8.69 7.80 -92.71 -0.72 7.97 16 34 H 0.41 9.68 8.49 -92.70 -0.79 8.90 16 35 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 39 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 40 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 41 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 42 H 0.42 1.41 7.90 -92.70 -0.73 0.67 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.09 0.31 8.09 -2.39 -0.02 0.29 16 46 H 0.10 0.23 8.08 -2.39 -0.02 0.21 16 47 H 0.14 0.85 8.06 -2.91 -0.02 0.83 16 48 H 0.14 0.84 8.06 -2.91 -0.02 0.81 16 49 H 0.13 0.86 8.06 -2.91 -0.02 0.84 16 50 H 0.13 0.95 8.06 -2.91 -0.02 0.93 16 51 H 0.13 1.04 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -78.68 429.61 -0.46 -79.14 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -1.30 Total: 20.42 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 6.12 Total: 2.86 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -7.18 Total: -109.95 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -0.11 Total: -38.70 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -78.68 -0.46 -79.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454438591.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.410 kcal (2) G-P(sol) polarization free energy of solvation -78.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds