Wall clock time and date at job start Wed Apr 1 2020 05:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 N 1.46504 * 109.46930 * 120.00198 * 2 1 3 5 5 C 1.34777 * 119.99854 * 274.99613 * 4 2 1 6 6 O 1.21593 * 119.99953 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00097 * 180.27545 * 5 4 2 8 8 C 1.46500 * 120.00431 * 179.72742 * 7 5 4 9 9 C 1.52999 * 109.47528 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47306 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47245 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00090 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00007 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00091 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00065 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47285 * 89.99752 * 15 13 11 17 17 H 1.48507 * 109.47075 * 209.99695 * 15 13 11 18 18 H 1.48503 * 109.47167 * 329.99632 * 15 13 11 19 19 C 1.50700 * 109.47132 * 240.00180 * 2 1 3 20 20 O 1.21286 * 119.99628 * 239.99994 * 19 2 1 21 21 N 1.34770 * 120.00422 * 59.99876 * 19 2 1 22 22 C 1.46496 * 120.00441 * 179.97438 * 21 19 2 23 23 C 1.53000 * 109.47091 * 179.97438 * 22 21 19 24 24 C 1.50706 * 109.46797 * 180.02562 * 23 22 21 25 25 C 1.38239 * 119.99743 * 269.72336 * 24 23 22 26 26 C 1.38233 * 119.99632 * 179.76258 * 25 24 23 27 27 C 1.38228 * 120.00120 * 0.51849 * 26 25 24 28 28 C 1.38237 * 120.00247 * 359.74093 * 27 26 25 29 29 C 1.38228 * 120.00152 * 90.00443 * 24 23 22 30 30 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47470 * 299.99796 * 1 2 3 32 32 H 1.08998 * 109.47338 * 59.99872 * 1 2 3 33 33 H 0.97000 * 120.00410 * 95.00338 * 4 2 1 34 34 H 0.97000 * 120.00112 * 359.73180 * 7 5 4 35 35 H 1.09009 * 109.46712 * 300.00517 * 8 7 5 36 36 H 1.08998 * 109.47207 * 59.99494 * 8 7 5 37 37 H 1.09003 * 109.46366 * 299.99640 * 9 8 7 38 38 H 1.08993 * 109.47533 * 59.99613 * 9 8 7 39 39 H 1.09000 * 109.46924 * 300.00089 * 10 9 8 40 40 H 1.09007 * 109.47220 * 59.99210 * 10 9 8 41 41 H 0.97004 * 120.00400 * 180.02562 * 14 13 11 42 42 H 0.97006 * 119.99258 * 359.97438 * 21 19 2 43 43 H 1.08998 * 109.47116 * 299.99928 * 22 21 19 44 44 H 1.09001 * 109.47029 * 59.99904 * 22 21 19 45 45 H 1.08998 * 109.47187 * 300.00013 * 23 22 21 46 46 H 1.09007 * 109.47062 * 60.00568 * 23 22 21 47 47 H 1.08000 * 119.99880 * 0.02562 * 25 24 23 48 48 H 1.08005 * 119.99660 * 180.23220 * 26 25 24 49 49 H 1.08005 * 120.00321 * 179.71729 * 27 26 25 50 50 H 1.08005 * 120.00300 * 179.97438 * 28 27 26 51 51 H 1.08005 * 119.99925 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8575 1.1614 2.4118 7 7 2.6015 -0.6523 3.4562 8 6 2.7471 0.0800 4.7167 9 6 3.2773 -0.8648 5.7971 10 6 3.4288 -0.1001 7.1136 11 6 3.9504 -1.0308 8.1779 12 1 4.1540 -2.0642 7.9391 13 6 4.1688 -0.5628 9.4563 14 7 4.6245 -1.3748 10.3850 15 14 3.8174 1.2248 9.8692 16 1 2.4111 1.3600 10.3268 17 1 4.7343 1.6731 10.9480 18 1 4.0275 2.0624 8.6611 19 6 2.0323 -0.7104 -1.2305 20 8 2.7296 -1.6965 -1.1191 21 7 1.7068 -0.2500 -2.4545 22 6 2.1955 -0.9402 -3.6507 23 6 1.6849 -0.2194 -4.8999 24 6 2.1872 -0.9298 -6.1304 25 6 3.3921 -0.5602 -6.6984 26 6 3.8552 -1.2152 -7.8242 27 6 3.1084 -2.2325 -8.3882 28 6 1.9010 -2.5985 -7.8233 29 6 1.4405 -1.9472 -6.6944 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.2490 -1.6318 1.1527 34 1 2.8322 -1.5934 3.4127 35 1 3.4475 0.9039 4.5794 36 1 1.7779 0.4742 5.0220 37 1 2.5772 -1.6888 5.9345 38 1 4.2466 -1.2586 5.4917 39 1 4.1286 0.7242 6.9765 40 1 2.4592 0.2934 7.4189 41 1 4.7778 -1.0457 11.2845 42 1 1.1487 0.5385 -2.5435 43 1 3.2855 -0.9397 -3.6506 44 1 1.8326 -1.9680 -3.6509 45 1 0.5949 -0.2202 -4.8999 46 1 2.0475 0.8086 -4.9000 47 1 3.9736 0.2374 -6.2602 48 1 4.7984 -0.9289 -8.2658 49 1 3.4681 -2.7412 -9.2705 50 1 1.3173 -3.3932 -8.2643 51 1 0.4971 -2.2332 -6.2530 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454438883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:57 Heat of formation + Delta-G solvation = -62.660701 kcal Electronic energy + Delta-G solvation = -28250.120559 eV Core-core repulsion = 24148.556607 eV Total energy + Delta-G solvation = -4101.563952 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.70904 -39.87400 -39.38974 -36.18647 -35.74771 -34.83903 -33.42116 -33.20025 -31.67207 -31.40520 -30.50324 -28.78870 -27.01274 -25.22542 -23.77786 -23.10386 -22.66342 -21.63579 -20.98194 -20.58469 -20.23990 -18.69271 -17.35122 -17.30945 -16.70290 -16.57735 -16.33610 -15.93415 -15.65513 -15.44652 -15.34125 -14.66596 -14.55151 -14.30472 -14.04675 -13.94884 -13.81092 -13.63961 -13.56602 -13.36647 -12.96390 -12.71110 -12.65297 -12.37685 -12.12071 -12.05063 -11.89235 -11.82366 -11.62977 -11.45852 -11.03823 -10.86959 -10.31537 -10.24862 -9.99162 -9.80646 -9.66302 -9.61619 -9.42809 -9.33909 -9.24694 -9.20157 -8.69363 -8.53220 -6.04006 -4.02611 0.79759 0.88761 2.16671 2.35854 2.94012 3.26000 3.29511 3.33167 3.40626 3.45258 4.10922 4.23479 4.28149 4.33259 4.46133 4.46643 4.53238 4.58421 4.62700 4.73039 4.83109 4.94575 4.99291 5.02732 5.19821 5.30241 5.31467 5.40460 5.44279 5.51033 5.53437 5.58856 5.72252 5.82369 5.86498 5.95438 6.01544 6.06485 6.06567 6.27596 6.40316 6.47905 6.50102 6.71843 6.84652 6.94973 7.01139 7.26429 7.39670 7.70139 7.78225 8.09308 8.52746 8.66913 9.00128 9.58331 11.09303 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029079 B = 0.001262 C = 0.001242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.678345 B =22187.169087 C =22540.907659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.147 3.853 3 H 0.115 0.885 4 N -0.735 5.735 5 C 0.706 3.294 6 O -0.596 6.596 7 N -0.739 5.739 8 C 0.133 3.867 9 C -0.114 4.114 10 C -0.011 4.011 11 C -0.522 4.522 12 H 0.072 0.928 13 C 0.067 3.933 14 N -0.904 5.904 15 Si 0.879 3.121 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.264 1.264 19 C 0.513 3.487 20 O -0.531 6.531 21 N -0.728 5.728 22 C 0.125 3.875 23 C -0.092 4.092 24 C -0.083 4.083 25 C -0.114 4.114 26 C -0.118 4.118 27 C -0.122 4.122 28 C -0.119 4.119 29 C -0.114 4.114 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.405 0.595 34 H 0.397 0.603 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.263 0.737 42 H 0.403 0.597 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.122 0.878 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.868 1.217 -40.888 41.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.133 0.867 4 N -0.393 5.393 5 C 0.405 3.595 6 O -0.474 6.474 7 N -0.393 5.393 8 C 0.010 3.990 9 C -0.152 4.152 10 C -0.049 4.049 11 C -0.560 4.560 12 H 0.090 0.910 13 C -0.134 4.134 14 N -0.543 5.543 15 Si 0.707 3.293 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.189 1.189 19 C 0.298 3.702 20 O -0.407 6.407 21 N -0.381 5.381 22 C 0.001 3.999 23 C -0.130 4.130 24 C -0.084 4.084 25 C -0.132 4.132 26 C -0.136 4.136 27 C -0.140 4.140 28 C -0.137 4.137 29 C -0.132 4.132 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.241 0.759 34 H 0.231 0.769 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.238 0.762 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.141 0.859 48 H 0.141 0.859 49 H 0.139 0.861 50 H 0.140 0.860 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.551 1.583 -40.530 41.452 hybrid contribution -0.135 0.304 0.185 0.380 sum -8.686 1.887 -40.345 41.313 Atomic orbital electron populations 1.22175 0.93011 1.03068 1.03635 1.20496 0.95354 0.97844 0.82617 0.86723 1.44811 1.72359 1.14353 1.07819 1.15888 0.78389 0.84977 0.80196 1.90906 1.57560 1.14276 1.84681 1.45307 1.70080 1.14118 1.09754 1.21529 1.01185 0.95217 0.81062 1.21714 1.00481 0.98111 0.94869 1.19499 0.96680 0.96392 0.92293 1.21109 1.43645 0.97778 0.93453 0.91005 1.25019 0.94519 0.97587 0.96301 1.69914 1.45933 1.35467 1.02954 0.86781 0.78355 0.85825 0.78365 1.20254 1.21390 1.18862 1.20741 0.79995 0.84662 0.84805 1.90728 1.37295 1.26111 1.86567 1.45908 1.54276 1.32533 1.05404 1.21345 0.99797 0.96419 0.82294 1.20789 1.01634 0.99426 0.91128 1.19637 0.95274 0.97018 0.96444 1.21104 0.95687 1.00137 0.96239 1.21185 0.99878 0.96327 0.96245 1.21208 0.95096 0.97572 1.00105 1.21182 0.96455 0.99812 0.96221 1.21089 0.99935 0.95921 0.96248 0.91837 0.90284 0.91322 0.75894 0.76937 0.91932 0.91905 0.92113 0.92072 0.96281 0.96716 0.92722 0.76186 0.91067 0.91061 0.90038 0.90016 0.85912 0.85935 0.86051 0.85951 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.38 37.16 0.35 -0.84 16 2 C 0.15 1.37 2.98 -69.08 -0.21 1.17 16 3 H 0.12 1.12 7.58 -51.93 -0.39 0.73 16 4 N -0.74 -8.53 4.96 -59.81 -0.30 -8.83 16 5 C 0.71 10.53 8.53 -86.92 -0.74 9.79 16 6 O -0.60 -10.84 16.01 5.28 0.08 -10.76 16 7 N -0.74 -10.64 5.56 -65.22 -0.36 -11.00 16 8 C 0.13 2.26 5.67 -4.04 -0.02 2.24 16 9 C -0.11 -2.16 5.27 -26.73 -0.14 -2.30 16 10 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 11 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 12 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 15 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 19 C 0.51 4.72 7.22 -10.99 -0.08 4.64 16 20 O -0.53 -6.84 15.84 5.55 0.09 -6.76 16 21 N -0.73 -4.19 5.45 -60.30 -0.33 -4.51 16 22 C 0.12 0.72 5.66 -4.04 -0.02 0.70 16 23 C -0.09 -0.34 5.46 -27.88 -0.15 -0.49 16 24 C -0.08 -0.44 5.13 -104.62 -0.54 -0.98 16 25 C -0.11 -0.63 9.70 -39.58 -0.38 -1.01 16 26 C -0.12 -0.64 10.05 -39.59 -0.40 -1.04 16 27 C -0.12 -0.64 10.05 -39.59 -0.40 -1.04 16 28 C -0.12 -0.63 10.05 -39.58 -0.40 -1.03 16 29 C -0.11 -0.61 9.70 -39.59 -0.38 -0.99 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.30 7.56 -51.93 -0.39 -0.09 16 33 H 0.40 4.35 7.80 -40.82 -0.32 4.03 16 34 H 0.40 4.77 8.49 -40.82 -0.35 4.42 16 35 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 40 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 41 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.40 1.19 7.89 -40.82 -0.32 0.86 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.21 8.08 -51.93 -0.42 -0.21 16 46 H 0.08 0.23 8.08 -51.93 -0.42 -0.19 16 47 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 48 H 0.12 0.46 8.06 -52.48 -0.42 0.04 16 49 H 0.12 0.43 8.06 -52.48 -0.42 0.01 16 50 H 0.12 0.44 8.06 -52.48 -0.42 0.01 16 51 H 0.12 0.47 8.06 -52.48 -0.42 0.05 16 LS Contribution 426.00 15.07 6.42 6.42 Total: -1.00 -36.34 426.00 -10.81 -47.15 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -8.46 Total: 3.14 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -4.06 Total: -4.85 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.21 Total: -51.54 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.17 Total: -17.52 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -36.34 -10.81 -47.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454438883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.511 kcal (2) G-P(sol) polarization free energy of solvation -36.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds