Wall clock time and date at job start Wed Apr 1 2020 05:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 N 1.46504 * 109.46930 * 120.00198 * 2 1 3 5 5 C 1.34777 * 119.99854 * 274.99613 * 4 2 1 6 6 O 1.21593 * 119.99953 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00097 * 180.27545 * 5 4 2 8 8 C 1.46500 * 120.00431 * 179.72742 * 7 5 4 9 9 C 1.52999 * 109.47528 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47306 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47245 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00090 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00007 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00091 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00065 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47285 * 89.99752 * 15 13 11 17 17 H 1.48507 * 109.47075 * 209.99695 * 15 13 11 18 18 H 1.48503 * 109.47167 * 329.99632 * 15 13 11 19 19 C 1.50700 * 109.47132 * 240.00180 * 2 1 3 20 20 O 1.21286 * 119.99628 * 239.99994 * 19 2 1 21 21 N 1.34770 * 120.00422 * 59.99876 * 19 2 1 22 22 C 1.46496 * 120.00441 * 179.97438 * 21 19 2 23 23 C 1.53000 * 109.47091 * 179.97438 * 22 21 19 24 24 C 1.50706 * 109.46797 * 180.02562 * 23 22 21 25 25 C 1.38239 * 119.99743 * 269.72336 * 24 23 22 26 26 C 1.38233 * 119.99632 * 179.76258 * 25 24 23 27 27 C 1.38228 * 120.00120 * 0.51849 * 26 25 24 28 28 C 1.38237 * 120.00247 * 359.74093 * 27 26 25 29 29 C 1.38228 * 120.00152 * 90.00443 * 24 23 22 30 30 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47470 * 299.99796 * 1 2 3 32 32 H 1.08998 * 109.47338 * 59.99872 * 1 2 3 33 33 H 0.97000 * 120.00410 * 95.00338 * 4 2 1 34 34 H 0.97000 * 120.00112 * 359.73180 * 7 5 4 35 35 H 1.09009 * 109.46712 * 300.00517 * 8 7 5 36 36 H 1.08998 * 109.47207 * 59.99494 * 8 7 5 37 37 H 1.09003 * 109.46366 * 299.99640 * 9 8 7 38 38 H 1.08993 * 109.47533 * 59.99613 * 9 8 7 39 39 H 1.09000 * 109.46924 * 300.00089 * 10 9 8 40 40 H 1.09007 * 109.47220 * 59.99210 * 10 9 8 41 41 H 0.97004 * 120.00400 * 180.02562 * 14 13 11 42 42 H 0.97006 * 119.99258 * 359.97438 * 21 19 2 43 43 H 1.08998 * 109.47116 * 299.99928 * 22 21 19 44 44 H 1.09001 * 109.47029 * 59.99904 * 22 21 19 45 45 H 1.08998 * 109.47187 * 300.00013 * 23 22 21 46 46 H 1.09007 * 109.47062 * 60.00568 * 23 22 21 47 47 H 1.08000 * 119.99880 * 0.02562 * 25 24 23 48 48 H 1.08005 * 119.99660 * 180.23220 * 26 25 24 49 49 H 1.08005 * 120.00321 * 179.71729 * 27 26 25 50 50 H 1.08005 * 120.00300 * 179.97438 * 28 27 26 51 51 H 1.08005 * 119.99925 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8575 1.1614 2.4118 7 7 2.6015 -0.6523 3.4562 8 6 2.7471 0.0800 4.7167 9 6 3.2773 -0.8648 5.7971 10 6 3.4288 -0.1001 7.1136 11 6 3.9504 -1.0308 8.1779 12 1 4.1540 -2.0642 7.9391 13 6 4.1688 -0.5628 9.4563 14 7 4.6245 -1.3748 10.3850 15 14 3.8174 1.2248 9.8692 16 1 2.4111 1.3600 10.3268 17 1 4.7343 1.6731 10.9480 18 1 4.0275 2.0624 8.6611 19 6 2.0323 -0.7104 -1.2305 20 8 2.7296 -1.6965 -1.1191 21 7 1.7068 -0.2500 -2.4545 22 6 2.1955 -0.9402 -3.6507 23 6 1.6849 -0.2194 -4.8999 24 6 2.1872 -0.9298 -6.1304 25 6 3.3921 -0.5602 -6.6984 26 6 3.8552 -1.2152 -7.8242 27 6 3.1084 -2.2325 -8.3882 28 6 1.9010 -2.5985 -7.8233 29 6 1.4405 -1.9472 -6.6944 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.2490 -1.6318 1.1527 34 1 2.8322 -1.5934 3.4127 35 1 3.4475 0.9039 4.5794 36 1 1.7779 0.4742 5.0220 37 1 2.5772 -1.6888 5.9345 38 1 4.2466 -1.2586 5.4917 39 1 4.1286 0.7242 6.9765 40 1 2.4592 0.2934 7.4189 41 1 4.7778 -1.0457 11.2845 42 1 1.1487 0.5385 -2.5435 43 1 3.2855 -0.9397 -3.6506 44 1 1.8326 -1.9680 -3.6509 45 1 0.5949 -0.2202 -4.8999 46 1 2.0475 0.8086 -4.9000 47 1 3.9736 0.2374 -6.2602 48 1 4.7984 -0.9289 -8.2658 49 1 3.4681 -2.7412 -9.2705 50 1 1.3173 -3.3932 -8.2643 51 1 0.4971 -2.2332 -6.2530 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454438883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:56 Heat of formation + Delta-G solvation = -87.992577 kcal Electronic energy + Delta-G solvation = -28251.219032 eV Core-core repulsion = 24148.556607 eV Total energy + Delta-G solvation = -4102.662424 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.57858 -40.57587 -40.06708 -37.22525 -36.61922 -35.93434 -35.13928 -33.86518 -33.30326 -31.75692 -31.52102 -29.29891 -28.67416 -25.90932 -24.78534 -23.90498 -23.46197 -22.24229 -22.06442 -21.80276 -21.24455 -19.73973 -18.95916 -18.05172 -17.76966 -17.31658 -16.98063 -16.79719 -16.68853 -16.28048 -16.05453 -15.90506 -15.62806 -15.39900 -15.26477 -14.80854 -14.75232 -14.51441 -14.22049 -13.95678 -13.84675 -13.78867 -13.76189 -13.51659 -13.29634 -12.77168 -12.72245 -12.69860 -12.61954 -12.43656 -11.97849 -11.91870 -11.78973 -11.76698 -11.57683 -11.33540 -11.30181 -11.04295 -10.74723 -10.42919 -10.20259 -9.84068 -9.80573 -9.62701 -8.28035 -6.32144 0.42215 0.51268 1.38498 1.40144 1.43878 1.48412 1.52328 2.07578 2.21025 2.38090 2.88523 3.07951 3.25928 3.54500 3.91784 3.94063 4.02501 4.06094 4.11516 4.12572 4.19238 4.23017 4.24419 4.31336 4.53412 4.58400 4.63961 4.64960 4.65506 4.78871 4.92524 4.92774 4.95058 4.99331 5.05329 5.18540 5.19204 5.21592 5.32142 5.36881 5.43178 5.53353 5.58144 5.58835 5.65078 5.66459 5.70144 5.94202 6.13422 6.29029 6.40133 6.75958 7.01257 7.08944 7.32855 7.52354 8.88559 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029079 B = 0.001262 C = 0.001242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.678345 B =22187.169087 C =22540.907659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.144 3.856 3 H 0.113 0.887 4 N -0.726 5.726 5 C 0.705 3.295 6 O -0.629 6.629 7 N -0.734 5.734 8 C 0.148 3.852 9 C -0.101 4.101 10 C -0.011 4.011 11 C -0.532 4.532 12 H 0.036 0.964 13 C 0.005 3.995 14 N -0.952 5.952 15 Si 0.948 3.052 16 H -0.266 1.266 17 H -0.285 1.285 18 H -0.247 1.247 19 C 0.516 3.484 20 O -0.572 6.572 21 N -0.708 5.708 22 C 0.129 3.871 23 C -0.081 4.081 24 C -0.093 4.093 25 C -0.128 4.128 26 C -0.132 4.132 27 C -0.134 4.134 28 C -0.131 4.131 29 C -0.126 4.126 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.410 0.590 34 H 0.409 0.591 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.266 0.734 42 H 0.420 0.580 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.099 0.901 46 H 0.094 0.906 47 H 0.132 0.868 48 H 0.134 0.866 49 H 0.135 0.865 50 H 0.136 0.864 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.267 2.830 -42.824 44.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.035 3.965 3 H 0.131 0.869 4 N -0.384 5.384 5 C 0.405 3.595 6 O -0.510 6.510 7 N -0.389 5.389 8 C 0.023 3.977 9 C -0.139 4.139 10 C -0.049 4.049 11 C -0.570 4.570 12 H 0.054 0.946 13 C -0.191 4.191 14 N -0.593 5.593 15 Si 0.771 3.229 16 H -0.191 1.191 17 H -0.211 1.211 18 H -0.170 1.170 19 C 0.302 3.698 20 O -0.451 6.451 21 N -0.361 5.361 22 C 0.005 3.995 23 C -0.119 4.119 24 C -0.093 4.093 25 C -0.146 4.146 26 C -0.150 4.150 27 C -0.152 4.152 28 C -0.149 4.149 29 C -0.143 4.143 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.247 0.753 34 H 0.245 0.755 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.075 0.925 42 H 0.258 0.742 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.117 0.883 46 H 0.113 0.887 47 H 0.150 0.850 48 H 0.152 0.848 49 H 0.153 0.847 50 H 0.154 0.846 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.979 3.192 -42.539 43.810 hybrid contribution 0.326 -0.305 0.693 0.825 sum -9.653 2.886 -41.846 43.042 Atomic orbital electron populations 1.22135 0.91162 1.03432 1.04421 1.20692 0.96712 0.97373 0.81771 0.86931 1.44773 1.71492 1.14535 1.07550 1.15950 0.78150 0.84597 0.80803 1.90881 1.59068 1.15760 1.85298 1.45083 1.70112 1.14624 1.09045 1.21168 1.00635 0.94448 0.81416 1.21486 1.00870 0.98028 0.93505 1.19457 0.96577 0.95858 0.93014 1.21482 1.43337 0.97172 0.95036 0.94600 1.25984 0.94350 1.02618 0.96187 1.70064 1.47643 1.37954 1.03594 0.85688 0.78590 0.79881 0.78696 1.19129 1.21065 1.17006 1.20682 0.79518 0.84069 0.85555 1.90718 1.39315 1.27975 1.87136 1.45751 1.53385 1.32565 1.04371 1.21302 0.98872 0.96311 0.83000 1.20730 1.02593 0.99448 0.89082 1.19844 0.95282 0.97210 0.96990 1.21349 0.96102 1.00615 0.96521 1.21446 1.00536 0.96526 0.96497 1.21476 0.95286 0.97749 1.00706 1.21462 0.96729 1.00273 0.96439 1.21354 1.00595 0.95979 0.96418 0.91648 0.92190 0.87829 0.75299 0.75513 0.92570 0.92188 0.91765 0.92001 0.96003 0.95969 0.92524 0.74187 0.92696 0.92101 0.88278 0.88727 0.85030 0.84808 0.84742 0.84617 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.38 71.98 0.68 -1.25 16 2 C 0.14 2.47 2.98 44.24 0.13 2.60 16 3 H 0.11 2.03 7.58 -2.39 -0.02 2.02 16 4 N -0.73 -16.06 4.96 -461.40 -2.29 -18.35 16 5 C 0.71 20.27 8.53 179.06 1.53 21.80 16 6 O -0.63 -22.28 16.01 -4.01 -0.06 -22.34 16 7 N -0.73 -20.21 5.56 -478.53 -2.66 -22.87 16 8 C 0.15 4.80 5.67 86.38 0.49 5.29 16 9 C -0.10 -3.73 5.27 30.59 0.16 -3.57 16 10 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 11 C -0.53 -30.59 9.66 25.60 0.25 -30.34 16 12 H 0.04 2.25 7.99 -2.91 -0.02 2.22 16 13 C 0.01 0.31 5.47 84.65 0.46 0.78 16 14 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 15 Si 0.95 44.57 27.47 68.60 1.88 46.46 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 18 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 19 C 0.52 8.76 7.22 87.66 0.63 9.39 16 20 O -0.57 -14.40 15.84 -3.05 -0.05 -14.45 16 21 N -0.71 -6.61 5.45 -463.07 -2.52 -9.14 16 22 C 0.13 1.30 5.66 86.38 0.49 1.79 16 23 C -0.08 -0.41 5.46 29.85 0.16 -0.25 16 24 C -0.09 -0.87 5.13 -19.86 -0.10 -0.97 16 25 C -0.13 -1.31 9.70 22.27 0.22 -1.09 16 26 C -0.13 -1.36 10.05 22.27 0.22 -1.13 16 27 C -0.13 -1.34 10.05 22.27 0.22 -1.11 16 28 C -0.13 -1.28 10.05 22.27 0.22 -1.05 16 29 C -0.13 -1.20 9.70 22.27 0.22 -0.98 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 0.55 7.56 -2.39 -0.02 0.53 16 33 H 0.41 8.41 7.80 -92.71 -0.72 7.69 16 34 H 0.41 9.28 8.49 -92.71 -0.79 8.49 16 35 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.02 0.99 7.20 -2.39 -0.02 0.98 16 40 H 0.02 0.99 7.57 -2.38 -0.02 0.97 16 41 H 0.27 15.65 8.31 -92.71 -0.77 14.87 16 42 H 0.42 1.13 7.89 -92.70 -0.73 0.40 16 43 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.10 0.19 8.08 -2.39 -0.02 0.17 16 46 H 0.09 0.27 8.08 -2.38 -0.02 0.25 16 47 H 0.13 0.99 8.06 -2.91 -0.02 0.97 16 48 H 0.13 0.93 8.06 -2.91 -0.02 0.91 16 49 H 0.13 0.85 8.06 -2.91 -0.02 0.83 16 50 H 0.14 0.83 8.06 -2.91 -0.02 0.80 16 51 H 0.14 0.83 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -79.51 426.00 -0.65 -80.16 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -1.35 Total: 20.73 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 6.10 Total: -0.50 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -7.17 Total: -110.06 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -0.11 Total: -36.79 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.46 kcal Total: -79.51 -0.65 -80.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454438883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.830 kcal (2) G-P(sol) polarization free energy of solvation -79.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds