Wall clock time and date at job start Wed Apr 1 2020 04:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47304 * 2 1 4 4 C 1.53006 * 109.47519 * 239.99393 * 2 1 3 5 5 N 1.46496 * 109.46735 * 65.00100 * 4 2 1 6 6 C 1.34773 * 119.99875 * 180.02562 * 5 4 2 7 7 O 1.21585 * 120.00046 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00014 * 180.27909 * 6 5 4 9 9 C 1.39953 * 120.00001 * 174.57571 * 8 6 5 10 10 C 1.39283 * 119.94887 * 145.76860 * 9 8 6 11 11 C 1.38494 * 120.43246 * 179.97438 * 10 9 8 12 12 C 1.37685 * 120.31707 * 359.97438 * 11 10 9 13 13 C 1.40739 * 119.88801 * 0.02562 * 12 11 10 14 14 C 1.41408 * 120.21371 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99635 * 205.17123 * 14 13 12 16 16 C 1.39925 * 119.99981 * 25.17152 * 14 13 12 17 17 N 1.30833 * 120.00068 * 16.78976 * 16 14 13 18 18 Si 1.86802 * 120.00252 * 196.78548 * 16 14 13 19 19 H 1.48497 * 109.47095 * 94.96376 * 18 16 14 20 20 H 1.48505 * 109.47181 * 214.96666 * 18 16 14 21 21 H 1.48504 * 109.46824 * 334.96652 * 18 16 14 22 22 C 1.38240 * 119.94630 * 325.49411 * 9 8 6 23 23 C 1.53007 * 109.46902 * 119.99872 * 2 1 3 24 24 N 1.46909 * 109.46793 * 294.99944 * 23 2 1 25 25 C 1.47012 * 110.99708 * 293.63650 * 24 23 2 26 26 C 1.53100 * 109.25249 * 177.60955 * 25 24 23 27 27 O 1.43009 * 109.25979 * 56.84887 * 26 25 24 28 28 C 1.43017 * 113.73980 * 301.32526 * 27 26 25 29 29 C 1.47010 * 110.99879 * 170.00258 * 24 23 2 30 30 H 1.09000 * 109.46871 * 60.00677 * 1 2 3 31 31 H 1.09004 * 109.47361 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47590 * 300.00241 * 1 2 3 33 33 H 1.09001 * 109.46821 * 305.00064 * 4 2 1 34 34 H 1.08994 * 109.46848 * 185.00241 * 4 2 1 35 35 H 0.97003 * 120.00378 * 359.97438 * 5 4 2 36 36 H 0.97000 * 120.00205 * 354.56635 * 8 6 5 37 37 H 1.08002 * 119.78808 * 359.97438 * 10 9 8 38 38 H 1.08000 * 119.84134 * 180.02562 * 11 10 9 39 39 H 1.08003 * 120.05432 * 179.97438 * 12 11 10 40 40 H 0.96998 * 120.00579 * 180.02562 * 17 16 14 41 41 H 1.08004 * 120.15809 * 359.97438 * 22 9 8 42 42 H 1.08994 * 109.47445 * 54.99801 * 23 2 1 43 43 H 1.08995 * 109.47026 * 175.00538 * 23 2 1 44 44 H 1.09002 * 109.50841 * 297.54184 * 25 24 23 45 45 H 1.08996 * 109.51047 * 57.67476 * 25 24 23 46 46 H 1.08996 * 109.50519 * 296.90704 * 26 25 24 47 47 H 1.09004 * 109.54159 * 176.80894 * 26 25 24 48 48 H 1.08999 * 109.50884 * 298.74076 * 28 27 26 49 49 H 1.09001 * 109.54328 * 178.62634 * 28 27 26 50 50 H 1.09012 * 109.50739 * 302.32609 * 29 24 23 51 51 H 1.09001 * 109.50733 * 62.45548 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 1.6526 0.0351 -2.4423 6 6 1.9957 -0.4139 -3.6658 7 8 2.6274 -1.4466 -3.7794 8 7 1.6441 0.2850 -4.7633 9 6 2.0962 -0.1188 -6.0247 10 6 1.2835 0.0537 -7.1427 11 6 1.7211 -0.3417 -8.3958 12 6 2.9658 -0.9098 -8.5500 13 6 3.7980 -1.0904 -7.4295 14 6 5.0774 -1.6736 -7.5799 15 1 5.5417 -2.1793 -6.7462 16 6 5.7417 -1.5956 -8.8089 17 7 5.3556 -0.7263 -9.7072 18 14 7.1801 -2.7324 -9.1671 19 1 6.6957 -3.9259 -9.9060 20 1 8.1854 -2.0142 -9.9911 21 1 7.8027 -3.1607 -7.8887 22 6 3.3509 -0.6830 -6.1600 23 6 2.0399 -0.7213 1.2493 24 7 1.6512 0.0376 2.4457 25 6 2.3403 1.3353 2.4933 26 6 1.8625 2.1159 3.7207 27 8 2.0958 1.3355 4.8962 28 6 1.4390 0.0652 4.8837 29 6 1.9125 -0.7361 3.6682 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6055 -1.7200 -1.2950 34 1 3.1263 -0.7996 -1.2054 35 1 1.1483 0.8589 -2.3518 36 1 1.0775 1.0678 -4.6789 37 1 0.3058 0.4988 -7.0317 38 1 1.0833 -0.2031 -9.2562 39 1 3.3026 -1.2171 -9.5291 40 1 5.8158 -0.6724 -10.5594 41 1 3.9837 -0.8127 -5.2944 42 1 1.6053 -1.7197 1.2953 43 1 3.1262 -0.7994 1.2057 44 1 3.4162 1.1740 2.5607 45 1 2.1124 1.9018 1.5904 46 1 0.7966 2.3239 3.6274 47 1 2.4116 3.0548 3.7921 48 1 0.3608 0.2135 4.8243 49 1 1.6818 -0.4798 5.7960 50 1 1.3723 -1.6819 3.6228 51 1 2.9815 -0.9306 3.7543 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455918565.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:55 Heat of formation + Delta-G solvation = -50.629758 kcal Electronic energy + Delta-G solvation = -29725.018795 eV Core-core repulsion = 25623.976544 eV Total energy + Delta-G solvation = -4101.042251 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.18783 -39.81757 -37.76473 -37.01484 -35.20952 -34.32119 -33.08821 -32.38741 -31.59003 -29.76502 -28.44589 -28.02150 -26.45033 -25.24419 -24.52956 -24.31015 -21.64402 -20.99788 -20.79742 -20.42996 -19.83500 -17.95050 -17.62566 -17.07553 -16.53738 -15.97030 -15.71472 -15.50687 -15.40305 -15.33710 -15.07443 -14.71178 -14.47591 -14.29196 -14.17567 -13.76637 -13.41377 -13.09175 -12.90855 -12.84515 -12.70271 -12.41922 -12.09846 -11.94532 -11.81043 -11.60800 -11.40686 -11.29637 -11.13194 -11.10368 -11.00382 -10.87817 -10.82502 -10.41923 -10.16229 -10.09425 -9.65744 -9.45070 -9.08780 -8.96729 -8.86761 -8.82185 -7.39391 -6.84019 -6.65769 -4.28670 2.76155 2.88832 3.04374 3.12218 3.17672 3.25539 3.33612 3.47601 3.76888 4.00176 4.32773 4.45390 4.49980 4.58030 4.66741 4.70288 4.71106 4.72485 4.82768 4.88725 5.03924 5.15124 5.22761 5.26789 5.34204 5.38173 5.42585 5.54256 5.60138 5.70179 5.75645 5.78188 5.96793 6.08017 6.28532 6.44710 6.48387 6.49462 6.61759 6.70113 6.83491 6.85065 7.09453 7.14289 7.29519 7.40218 7.74083 7.88407 8.04948 8.16293 8.30149 8.48982 8.71865 8.95391 9.02761 9.10197 10.26491 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017852 B = 0.001761 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.060578 B =15893.442630 C =16887.363117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 H 0.077 0.923 4 C 0.145 3.855 5 N -0.749 5.749 6 C 0.698 3.302 7 O -0.567 6.567 8 N -0.682 5.682 9 C 0.169 3.831 10 C -0.263 4.263 11 C -0.092 4.092 12 C -0.173 4.173 13 C 0.119 3.881 14 C -0.458 4.458 15 H 0.078 0.922 16 C 0.075 3.925 17 N -0.797 5.797 18 Si 0.908 3.092 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.262 1.262 22 C -0.209 4.209 23 C 0.062 3.938 24 N -0.533 5.533 25 C 0.013 3.987 26 C 0.064 3.936 27 O -0.387 6.387 28 C 0.064 3.936 29 C 0.017 3.983 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.392 0.608 36 H 0.393 0.607 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.279 0.721 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.041 0.959 44 H 0.044 0.956 45 H 0.090 0.910 46 H 0.059 0.941 47 H 0.097 0.903 48 H 0.059 0.941 49 H 0.097 0.903 50 H 0.087 0.913 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.915 4.999 23.596 25.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.118 4.118 3 H 0.095 0.905 4 C 0.020 3.980 5 N -0.407 5.407 6 C 0.398 3.602 7 O -0.442 6.442 8 N -0.328 5.328 9 C 0.077 3.923 10 C -0.285 4.285 11 C -0.111 4.111 12 C -0.193 4.193 13 C 0.116 3.884 14 C -0.488 4.488 15 H 0.096 0.904 16 C -0.142 4.142 17 N -0.422 5.422 18 Si 0.733 3.267 19 H -0.194 1.194 20 H -0.204 1.204 21 H -0.186 1.186 22 C -0.231 4.231 23 C -0.066 4.066 24 N -0.258 5.258 25 C -0.115 4.115 26 C -0.013 4.013 27 O -0.306 6.306 28 C -0.013 4.013 29 C -0.111 4.111 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.225 0.775 36 H 0.227 0.773 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.124 0.876 42 H 0.100 0.900 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.115 0.885 48 H 0.078 0.922 49 H 0.115 0.885 50 H 0.105 0.895 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.621 4.269 23.439 25.336 hybrid contribution 0.822 0.105 -0.414 0.926 sum -7.799 4.374 23.026 24.701 Atomic orbital electron populations 1.21727 0.93826 1.02209 1.01725 1.21377 0.97443 1.00052 0.92974 0.90492 1.21098 0.99815 0.94976 0.82104 1.45072 1.62314 1.28699 1.04606 1.15963 0.80389 0.83628 0.80222 1.90978 1.43959 1.24049 1.85204 1.42582 1.54093 1.31033 1.05115 1.17225 0.93287 1.00410 0.81404 1.20010 0.99185 1.16630 0.92659 1.20444 0.96327 0.99561 0.94784 1.21330 0.93077 1.05091 0.99786 1.17501 0.92483 0.88189 0.90201 1.19587 1.01108 1.31239 0.96817 0.90400 1.25896 0.98492 0.94227 0.95561 1.69834 1.38091 1.27758 1.06547 0.86303 0.80415 0.80689 0.79322 1.19373 1.20374 1.18585 1.20993 0.94924 1.09079 0.98061 1.22083 0.98506 0.97358 0.88685 1.62175 1.57748 1.03869 1.01994 1.22870 0.97000 0.91702 0.99978 1.22669 1.00961 0.93876 0.83800 1.87992 1.73051 1.29484 1.40043 1.22659 0.96997 0.84151 0.97487 1.22792 1.00211 0.97704 0.90437 0.93099 0.92683 0.91506 0.91577 0.91807 0.77463 0.77346 0.89397 0.89091 0.86365 0.91032 0.87592 0.90013 0.94089 0.93788 0.89193 0.92233 0.88461 0.92227 0.88486 0.89460 0.93826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.95 37.16 0.33 -0.69 16 2 C -0.10 -0.77 2.35 -90.61 -0.21 -0.98 16 3 H 0.08 0.57 6.30 -51.93 -0.33 0.24 16 4 C 0.15 1.62 5.06 -4.04 -0.02 1.60 16 5 N -0.75 -9.44 5.29 -65.23 -0.34 -9.79 16 6 C 0.70 12.82 8.29 -86.92 -0.72 12.10 16 7 O -0.57 -13.24 14.10 5.29 0.07 -13.16 16 8 N -0.68 -12.42 5.34 -14.27 -0.08 -12.49 16 9 C 0.17 3.92 6.25 -83.76 -0.52 3.40 16 10 C -0.26 -5.90 9.97 -39.10 -0.39 -6.29 16 11 C -0.09 -2.19 10.02 -39.69 -0.40 -2.59 16 12 C -0.17 -4.62 8.69 -38.84 -0.34 -4.96 16 13 C 0.12 3.35 5.57 -106.85 -0.59 2.76 16 14 C -0.46 -12.81 9.05 -37.74 -0.34 -13.15 16 15 H 0.08 2.16 7.90 -52.49 -0.41 1.75 16 16 C 0.08 1.96 5.16 -17.35 -0.09 1.87 16 17 N -0.80 -21.05 10.94 55.55 0.61 -20.44 16 18 Si 0.91 19.43 29.59 -169.99 -5.03 14.40 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.26 -5.60 7.11 56.52 0.40 -5.19 16 22 C -0.21 -5.56 8.39 -38.68 -0.32 -5.88 16 23 C 0.06 0.46 4.35 -3.82 -0.02 0.44 16 24 N -0.53 -3.80 4.18 -234.30 -0.98 -4.78 16 25 C 0.01 0.09 5.44 -3.71 -0.02 0.07 16 26 C 0.06 0.43 7.01 37.21 0.26 0.69 16 27 O -0.39 -3.30 10.83 -35.23 -0.38 -3.69 16 28 C 0.06 0.41 7.01 37.21 0.26 0.67 16 29 C 0.02 0.11 5.64 -3.71 -0.02 0.09 16 30 H 0.05 0.37 7.18 -51.93 -0.37 0.00 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.49 7.75 -51.93 -0.40 0.09 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.39 3.68 7.67 -40.82 -0.31 3.37 16 36 H 0.39 5.49 8.84 -40.82 -0.36 5.13 16 37 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 38 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.12 3.23 6.17 -52.48 -0.32 2.91 16 40 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 41 H 0.11 2.93 6.48 -52.48 -0.34 2.59 16 42 H 0.08 0.59 8.04 -51.93 -0.42 0.17 16 43 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 44 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.56 6.29 -51.93 -0.33 0.23 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.09 0.48 8.09 -51.92 -0.42 0.06 16 51 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 405.30 15.07 6.11 6.11 Total: -1.00 -32.99 405.30 -11.40 -44.39 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -8.23 Total: 10.32 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -3.16 Total: -10.87 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -0.79 Total: -47.50 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.31 Total: -16.85 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.99 -11.40 -44.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455918565.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.240 kcal (2) G-P(sol) polarization free energy of solvation -32.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds