Wall clock time and date at job start Wed Apr 1 2020 04:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47304 * 2 1 4 4 C 1.53006 * 109.47519 * 239.99393 * 2 1 3 5 5 N 1.46496 * 109.46735 * 65.00100 * 4 2 1 6 6 C 1.34773 * 119.99875 * 180.02562 * 5 4 2 7 7 O 1.21585 * 120.00046 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00014 * 180.27909 * 6 5 4 9 9 C 1.39953 * 120.00001 * 174.57571 * 8 6 5 10 10 C 1.39283 * 119.94887 * 145.76860 * 9 8 6 11 11 C 1.38494 * 120.43246 * 179.97438 * 10 9 8 12 12 C 1.37685 * 120.31707 * 359.97438 * 11 10 9 13 13 C 1.40739 * 119.88801 * 0.02562 * 12 11 10 14 14 C 1.41408 * 120.21371 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99635 * 205.17123 * 14 13 12 16 16 C 1.39925 * 119.99981 * 25.17152 * 14 13 12 17 17 N 1.30833 * 120.00068 * 16.78976 * 16 14 13 18 18 Si 1.86802 * 120.00252 * 196.78548 * 16 14 13 19 19 H 1.48497 * 109.47095 * 94.96376 * 18 16 14 20 20 H 1.48505 * 109.47181 * 214.96666 * 18 16 14 21 21 H 1.48504 * 109.46824 * 334.96652 * 18 16 14 22 22 C 1.38240 * 119.94630 * 325.49411 * 9 8 6 23 23 C 1.53007 * 109.46902 * 119.99872 * 2 1 3 24 24 N 1.46909 * 109.46793 * 294.99944 * 23 2 1 25 25 C 1.47012 * 110.99708 * 293.63650 * 24 23 2 26 26 C 1.53100 * 109.25249 * 177.60955 * 25 24 23 27 27 O 1.43009 * 109.25979 * 56.84887 * 26 25 24 28 28 C 1.43017 * 113.73980 * 301.32526 * 27 26 25 29 29 C 1.47010 * 110.99879 * 170.00258 * 24 23 2 30 30 H 1.09000 * 109.46871 * 60.00677 * 1 2 3 31 31 H 1.09004 * 109.47361 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47590 * 300.00241 * 1 2 3 33 33 H 1.09001 * 109.46821 * 305.00064 * 4 2 1 34 34 H 1.08994 * 109.46848 * 185.00241 * 4 2 1 35 35 H 0.97003 * 120.00378 * 359.97438 * 5 4 2 36 36 H 0.97000 * 120.00205 * 354.56635 * 8 6 5 37 37 H 1.08002 * 119.78808 * 359.97438 * 10 9 8 38 38 H 1.08000 * 119.84134 * 180.02562 * 11 10 9 39 39 H 1.08003 * 120.05432 * 179.97438 * 12 11 10 40 40 H 0.96998 * 120.00579 * 180.02562 * 17 16 14 41 41 H 1.08004 * 120.15809 * 359.97438 * 22 9 8 42 42 H 1.08994 * 109.47445 * 54.99801 * 23 2 1 43 43 H 1.08995 * 109.47026 * 175.00538 * 23 2 1 44 44 H 1.09002 * 109.50841 * 297.54184 * 25 24 23 45 45 H 1.08996 * 109.51047 * 57.67476 * 25 24 23 46 46 H 1.08996 * 109.50519 * 296.90704 * 26 25 24 47 47 H 1.09004 * 109.54159 * 176.80894 * 26 25 24 48 48 H 1.08999 * 109.50884 * 298.74076 * 28 27 26 49 49 H 1.09001 * 109.54328 * 178.62634 * 28 27 26 50 50 H 1.09012 * 109.50739 * 302.32609 * 29 24 23 51 51 H 1.09001 * 109.50733 * 62.45548 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 1.6526 0.0351 -2.4423 6 6 1.9957 -0.4139 -3.6658 7 8 2.6274 -1.4466 -3.7794 8 7 1.6441 0.2850 -4.7633 9 6 2.0962 -0.1188 -6.0247 10 6 1.2835 0.0537 -7.1427 11 6 1.7211 -0.3417 -8.3958 12 6 2.9658 -0.9098 -8.5500 13 6 3.7980 -1.0904 -7.4295 14 6 5.0774 -1.6736 -7.5799 15 1 5.5417 -2.1793 -6.7462 16 6 5.7417 -1.5956 -8.8089 17 7 5.3556 -0.7263 -9.7072 18 14 7.1801 -2.7324 -9.1671 19 1 6.6957 -3.9259 -9.9060 20 1 8.1854 -2.0142 -9.9911 21 1 7.8027 -3.1607 -7.8887 22 6 3.3509 -0.6830 -6.1600 23 6 2.0399 -0.7213 1.2493 24 7 1.6512 0.0376 2.4457 25 6 2.3403 1.3353 2.4933 26 6 1.8625 2.1159 3.7207 27 8 2.0958 1.3355 4.8962 28 6 1.4390 0.0652 4.8837 29 6 1.9125 -0.7361 3.6682 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6055 -1.7200 -1.2950 34 1 3.1263 -0.7996 -1.2054 35 1 1.1483 0.8589 -2.3518 36 1 1.0775 1.0678 -4.6789 37 1 0.3058 0.4988 -7.0317 38 1 1.0833 -0.2031 -9.2562 39 1 3.3026 -1.2171 -9.5291 40 1 5.8158 -0.6724 -10.5594 41 1 3.9837 -0.8127 -5.2944 42 1 1.6053 -1.7197 1.2953 43 1 3.1262 -0.7994 1.2057 44 1 3.4162 1.1740 2.5607 45 1 2.1124 1.9018 1.5904 46 1 0.7966 2.3239 3.6274 47 1 2.4116 3.0548 3.7921 48 1 0.3608 0.2135 4.8243 49 1 1.6818 -0.4798 5.7960 50 1 1.3723 -1.6819 3.6228 51 1 2.9815 -0.9306 3.7543 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455918565.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:54 Heat of formation + Delta-G solvation = -73.569208 kcal Electronic energy + Delta-G solvation = -29726.013524 eV Core-core repulsion = 25623.976544 eV Total energy + Delta-G solvation = -4102.036980 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.46610 -40.61760 -39.25648 -38.10504 -36.30718 -35.96177 -34.84838 -33.43842 -32.11000 -31.73324 -29.91884 -28.84388 -27.45575 -27.16754 -25.17281 -24.99247 -23.25573 -22.69153 -21.75478 -21.55634 -20.90006 -19.58588 -19.18682 -17.85630 -17.42225 -17.09197 -16.99526 -16.75771 -16.44870 -16.18663 -16.06593 -15.97799 -15.82874 -15.49000 -15.31349 -14.85052 -14.71175 -14.58103 -14.08828 -14.02034 -13.59750 -13.50058 -13.43700 -13.04795 -12.96971 -12.91057 -12.77460 -12.51982 -12.31326 -12.17566 -12.08879 -11.98364 -11.96290 -11.62121 -11.54936 -11.42174 -11.24048 -10.98586 -10.78416 -10.64269 -10.11376 -9.41442 -9.37853 -8.71471 -8.57329 -6.35918 0.93746 1.04240 1.35764 1.49046 1.49796 1.69049 2.19883 2.21541 2.70354 2.75373 2.97386 3.33365 3.73964 3.76188 3.86208 3.91519 3.99579 4.05427 4.21069 4.27697 4.34711 4.42560 4.48875 4.53307 4.63296 4.65789 4.70492 4.74879 4.80864 4.84205 4.88760 4.93666 5.03357 5.06458 5.10144 5.12221 5.13925 5.20957 5.26422 5.34062 5.43475 5.50975 5.74183 5.84536 5.92085 5.93926 6.07408 6.12823 6.19506 6.20988 6.38211 6.70268 6.95509 7.02484 7.12213 7.61607 8.34189 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017852 B = 0.001761 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.060578 B =15893.442630 C =16887.363117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 H 0.087 0.913 4 C 0.145 3.855 5 N -0.722 5.722 6 C 0.694 3.306 7 O -0.621 6.621 8 N -0.670 5.670 9 C 0.176 3.824 10 C -0.251 4.251 11 C -0.090 4.090 12 C -0.198 4.198 13 C 0.088 3.912 14 C -0.502 4.502 15 H 0.060 0.940 16 C 0.037 3.963 17 N -0.822 5.822 18 Si 0.981 3.019 19 H -0.259 1.259 20 H -0.261 1.261 21 H -0.266 1.266 22 C -0.236 4.236 23 C 0.064 3.936 24 N -0.532 5.532 25 C 0.013 3.987 26 C 0.063 3.937 27 O -0.410 6.410 28 C 0.063 3.937 29 C 0.016 3.984 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.413 0.587 36 H 0.418 0.582 37 H 0.133 0.867 38 H 0.124 0.876 39 H 0.104 0.896 40 H 0.289 0.711 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.032 0.968 44 H 0.031 0.969 45 H 0.099 0.901 46 H 0.065 0.935 47 H 0.108 0.892 48 H 0.064 0.936 49 H 0.110 0.890 50 H 0.099 0.901 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.750 6.162 24.222 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.102 4.102 3 H 0.106 0.894 4 C 0.020 3.980 5 N -0.380 5.380 6 C 0.394 3.606 7 O -0.500 6.500 8 N -0.318 5.318 9 C 0.082 3.918 10 C -0.272 4.272 11 C -0.109 4.109 12 C -0.218 4.218 13 C 0.085 3.915 14 C -0.532 4.532 15 H 0.079 0.921 16 C -0.177 4.177 17 N -0.448 5.448 18 Si 0.802 3.198 19 H -0.184 1.184 20 H -0.185 1.185 21 H -0.190 1.190 22 C -0.258 4.258 23 C -0.064 4.064 24 N -0.257 5.257 25 C -0.115 4.115 26 C -0.014 4.014 27 O -0.329 6.329 28 C -0.014 4.014 29 C -0.112 4.112 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.250 0.750 36 H 0.256 0.744 37 H 0.151 0.849 38 H 0.142 0.858 39 H 0.122 0.878 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.118 0.882 46 H 0.083 0.917 47 H 0.126 0.874 48 H 0.083 0.917 49 H 0.128 0.872 50 H 0.117 0.883 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.518 5.507 24.118 26.882 hybrid contribution 1.262 -0.184 -0.491 1.367 sum -9.256 5.323 23.627 25.928 Atomic orbital electron populations 1.21685 0.92932 1.02040 1.02285 1.21236 0.97879 0.99990 0.91128 0.89440 1.21195 0.98974 0.95035 0.82767 1.44837 1.61068 1.29085 1.02985 1.16204 0.79892 0.83036 0.81483 1.90958 1.46280 1.26626 1.86127 1.42320 1.54154 1.31800 1.03564 1.17285 0.92087 0.98647 0.83744 1.20448 1.00436 1.14808 0.91517 1.20832 0.95412 0.97922 0.96714 1.21291 0.94607 1.07221 0.98731 1.17847 0.93179 0.89097 0.91387 1.19719 1.02222 1.33436 0.97810 0.92148 1.26685 1.01118 0.95303 0.94625 1.69858 1.39401 1.28463 1.07069 0.85219 0.76971 0.78627 0.78996 1.18400 1.18530 1.19041 1.20934 0.96685 1.11355 0.96861 1.22031 0.97977 0.97599 0.88842 1.62204 1.57555 1.03980 1.01954 1.22900 0.96251 0.91747 1.00645 1.22771 1.01486 0.94056 0.83083 1.87963 1.73586 1.30382 1.40926 1.22777 0.97105 0.83549 0.97947 1.22838 0.99797 0.98245 0.90312 0.92560 0.93247 0.90857 0.92567 0.93428 0.75006 0.74435 0.84942 0.85794 0.87800 0.90015 0.90040 0.89749 0.95001 0.95037 0.88246 0.91659 0.87371 0.91747 0.87160 0.88309 0.94835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 8.95 71.98 0.64 -0.98 16 2 C -0.08 -1.14 2.35 -10.79 -0.03 -1.17 16 3 H 0.09 1.07 6.30 -2.39 -0.02 1.06 16 4 C 0.15 3.15 5.06 86.38 0.44 3.58 16 5 N -0.72 -17.11 5.29 -478.54 -2.53 -19.64 16 6 C 0.69 25.17 8.29 179.05 1.48 26.65 16 7 O -0.62 -29.92 14.10 -3.98 -0.06 -29.98 16 8 N -0.67 -23.29 5.34 -317.33 -1.70 -24.99 16 9 C 0.18 8.07 6.25 38.10 0.24 8.31 16 10 C -0.25 -10.59 9.97 22.58 0.23 -10.37 16 11 C -0.09 -4.15 10.02 22.20 0.22 -3.92 16 12 C -0.20 -10.84 8.69 22.75 0.20 -10.64 16 13 C 0.09 5.16 5.57 -21.31 -0.12 5.04 16 14 C -0.50 -29.76 9.05 23.46 0.21 -29.55 16 15 H 0.06 3.62 7.90 -2.91 -0.02 3.60 16 16 C 0.04 2.00 5.16 85.25 0.44 2.44 16 17 N -0.82 -44.44 10.94 21.82 0.24 -44.20 16 18 Si 0.98 40.80 29.59 68.60 2.03 42.83 16 19 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 20 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 22 C -0.24 -13.09 8.39 22.85 0.19 -12.90 16 23 C 0.06 0.88 4.35 86.30 0.38 1.26 16 24 N -0.53 -6.81 4.18 -895.19 -3.74 -10.55 16 25 C 0.01 0.16 5.44 86.32 0.47 0.63 16 26 C 0.06 0.74 7.01 72.02 0.50 1.25 16 27 O -0.41 -6.53 10.83 -148.98 -1.61 -8.14 16 28 C 0.06 0.72 7.01 72.01 0.50 1.22 16 29 C 0.02 0.19 5.64 86.31 0.49 0.68 16 30 H 0.06 0.64 7.18 -2.39 -0.02 0.62 16 31 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.07 0.86 7.75 -2.39 -0.02 0.84 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.41 6.51 7.67 -92.71 -0.71 5.80 16 36 H 0.42 10.26 8.84 -92.71 -0.82 9.44 16 37 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 38 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 39 H 0.10 5.87 6.17 -2.91 -0.02 5.85 16 40 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 41 H 0.08 4.81 6.48 -2.91 -0.02 4.79 16 42 H 0.08 1.13 8.04 -2.39 -0.02 1.12 16 43 H 0.03 0.51 8.12 -2.39 -0.02 0.49 16 44 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.10 1.02 6.29 -2.39 -0.02 1.00 16 46 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.10 0.93 8.09 -2.38 -0.02 0.91 16 51 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -75.87 405.30 -1.46 -77.33 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: -0.58 Total: 35.82 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 6.49 Total: -18.47 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -7.73 Total: -99.38 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -1.67 Total: -38.12 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -75.87 -1.46 -77.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455918565.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.763 kcal (2) G-P(sol) polarization free energy of solvation -75.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds