Wall clock time and date at job start Wed Apr 1 2020 04:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46724 * 2 1 4 4 N 1.46496 * 109.47432 * 239.99981 * 2 1 3 5 5 C 1.34773 * 120.00632 * 84.99566 * 4 2 1 6 6 O 1.21590 * 119.99724 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00236 * 179.97438 * 5 4 2 8 8 C 1.46504 * 119.99587 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46712 * 180.02562 * 8 7 5 10 10 C 1.53004 * 109.47013 * 299.99473 * 9 8 7 11 11 C 1.53002 * 109.47568 * 59.99350 * 9 8 7 12 12 C 1.50696 * 109.47237 * 179.97438 * 9 8 7 13 13 H 1.08002 * 119.99759 * 359.97438 * 12 9 8 14 14 C 1.37875 * 120.00137 * 179.97438 * 12 9 8 15 15 N 1.31515 * 120.00214 * 359.97438 * 14 12 9 16 16 Si 1.86806 * 120.00099 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.47111 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46964 * 119.99831 * 16 14 12 19 19 H 1.48490 * 109.47152 * 240.00087 * 16 14 12 20 20 C 1.50702 * 109.46903 * 119.99249 * 2 1 3 21 21 O 1.21282 * 119.99683 * 120.00730 * 20 2 1 22 22 N 1.34769 * 120.00461 * 300.00121 * 20 2 1 23 23 C 1.46500 * 120.00237 * 180.02562 * 22 20 2 24 24 C 1.50706 * 109.46949 * 180.02562 * 23 22 20 25 25 C 1.38231 * 119.99884 * 269.72390 * 24 23 22 26 26 C 1.38232 * 119.99941 * 179.77036 * 25 24 23 27 27 C 1.38241 * 119.99990 * 0.48356 * 26 25 24 28 28 C 1.38238 * 119.99720 * 359.79405 * 27 26 25 29 29 C 1.38234 * 120.00071 * 359.95221 * 28 27 26 30 30 H 1.09001 * 109.47194 * 60.00658 * 1 2 3 31 31 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 300.00478 * 1 2 3 33 33 H 0.97008 * 119.99554 * 264.99769 * 4 2 1 34 34 H 0.96996 * 120.00335 * 359.97438 * 7 5 4 35 35 H 1.09000 * 109.47327 * 299.99580 * 8 7 5 36 36 H 1.08991 * 109.47385 * 60.00231 * 8 7 5 37 37 H 1.09002 * 109.46838 * 59.99877 * 10 9 8 38 38 H 1.08999 * 109.47526 * 179.97438 * 10 9 8 39 39 H 1.09003 * 109.47287 * 300.00724 * 10 9 8 40 40 H 1.08998 * 109.46299 * 60.00112 * 11 9 8 41 41 H 1.08997 * 109.46898 * 180.02562 * 11 9 8 42 42 H 1.08997 * 109.47267 * 300.00173 * 11 9 8 43 43 H 0.97000 * 119.99795 * 180.02562 * 15 14 12 44 44 H 0.97010 * 119.99854 * 0.02562 * 22 20 2 45 45 H 1.09000 * 109.46609 * 60.00363 * 23 22 20 46 46 H 1.09000 * 109.47175 * 300.00158 * 23 22 20 47 47 H 1.07997 * 120.00101 * 0.02562 * 25 24 23 48 48 H 1.08002 * 120.00590 * 180.25684 * 26 25 24 49 49 H 1.08002 * 120.00430 * 179.77088 * 27 26 25 50 50 H 1.08003 * 119.99825 * 179.97438 * 28 27 26 51 51 H 1.07997 * 119.99984 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8583 1.1614 -2.4117 7 7 2.5969 -0.6537 -3.4574 8 6 2.7373 0.0773 -4.7192 9 6 3.2617 -0.8690 -5.8011 10 6 4.6240 -1.4224 -5.3780 11 6 2.2774 -2.0253 -5.9881 12 6 3.4056 -0.1174 -7.0993 13 1 3.1483 0.9304 -7.1479 14 6 3.8656 -0.7673 -8.2248 15 7 4.1794 -2.0431 -8.1655 16 14 4.0433 0.1642 -9.8343 17 1 3.6272 1.5761 -9.6375 18 1 5.4602 0.1223 -10.2766 19 1 3.1831 -0.4653 -10.8681 20 6 2.0323 -0.7103 1.2306 21 8 2.7297 -1.6963 1.1194 22 7 1.7067 -0.2498 2.4546 23 6 2.1955 -0.9399 3.6508 24 6 1.6925 -0.2298 4.8812 25 6 2.4414 0.7839 5.4489 26 6 1.9778 1.4385 6.5747 27 6 0.7699 1.0726 7.1387 28 6 0.0237 0.0549 6.5744 29 6 0.4848 -0.5961 5.4455 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2491 -1.6318 -1.1524 34 1 2.8284 -1.5946 -3.4136 35 1 1.7668 0.4712 -5.0209 36 1 3.4383 0.9012 -4.5858 37 1 4.5195 -1.9661 -4.4390 38 1 4.9974 -2.0970 -6.1484 39 1 5.3253 -0.5987 -5.2446 40 1 1.3069 -1.6310 -6.2896 41 1 2.6512 -2.6997 -6.7585 42 1 2.1729 -2.5691 -5.0493 43 1 4.5034 -2.5002 -8.9573 44 1 1.1487 0.5388 2.5435 45 1 3.2855 -0.9394 3.6506 46 1 1.8326 -1.9678 3.6511 47 1 3.3868 1.0673 5.0104 48 1 2.5609 2.2334 7.0158 49 1 0.4094 1.5815 8.0205 50 1 -0.9198 -0.2312 7.0153 51 1 -0.0980 -1.3914 5.0049 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457945631.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:24 Heat of formation + Delta-G solvation = -49.692332 kcal Electronic energy + Delta-G solvation = -29604.243502 eV Core-core repulsion = 25503.241900 eV Total energy + Delta-G solvation = -4101.001601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.58602 -39.74987 -39.07474 -36.52183 -35.39832 -34.77770 -33.25934 -32.07538 -31.40690 -31.02900 -29.86624 -26.74837 -25.66658 -25.59505 -24.98958 -23.87046 -23.08464 -21.80223 -20.88640 -20.28868 -18.73463 -18.71313 -17.57862 -16.77551 -16.57854 -16.07797 -15.77988 -15.63199 -15.36085 -15.16698 -14.82204 -14.67238 -14.23806 -13.97499 -13.87475 -13.47732 -13.41597 -13.29818 -13.02813 -12.87589 -12.83463 -12.51150 -12.43350 -12.12605 -11.76969 -11.59026 -11.53478 -11.33032 -11.15961 -10.84161 -10.62604 -10.33661 -10.19720 -10.17051 -9.79100 -9.57929 -9.50522 -9.41737 -9.34250 -9.26440 -9.02755 -8.73536 -8.38284 -8.17030 -5.98198 -4.08020 0.72029 0.89303 2.31545 2.61420 3.17434 3.29853 3.38354 3.41731 3.44065 3.64733 4.13151 4.34901 4.38953 4.42403 4.51118 4.63584 4.75703 4.84895 4.93735 4.98074 5.02486 5.20370 5.23683 5.28566 5.39334 5.48194 5.54021 5.63554 5.92369 5.97987 6.01029 6.01190 6.07163 6.25309 6.41002 6.46529 6.53140 6.57879 6.84292 6.89700 6.96128 7.08542 7.09975 7.14294 7.35277 7.46326 7.61397 7.74145 7.84346 8.06170 8.17414 8.42439 8.51197 8.91924 9.05119 9.57568 11.03241 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.032960 B = 0.001580 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.312944 B =17720.829180 C =17838.263592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.149 3.851 3 H 0.114 0.886 4 N -0.738 5.738 5 C 0.702 3.298 6 O -0.601 6.601 7 N -0.730 5.730 8 C 0.151 3.849 9 C 0.054 3.946 10 C -0.130 4.130 11 C -0.129 4.129 12 C -0.503 4.503 13 H 0.058 0.942 14 C 0.065 3.935 15 N -0.886 5.886 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.513 3.487 21 O -0.532 6.532 22 N -0.724 5.724 23 C 0.161 3.839 24 C -0.109 4.109 25 C -0.100 4.100 26 C -0.122 4.122 27 C -0.113 4.113 28 C -0.122 4.122 29 C -0.100 4.100 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.403 0.597 34 H 0.395 0.605 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.006 0.994 38 H 0.085 0.915 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.084 0.916 42 H 0.006 0.994 43 H 0.259 0.741 44 H 0.404 0.596 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.125 0.875 48 H 0.124 0.876 49 H 0.123 0.877 50 H 0.124 0.876 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.832 2.265 30.192 31.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.038 3.962 3 H 0.132 0.868 4 N -0.397 5.397 5 C 0.402 3.598 6 O -0.481 6.481 7 N -0.384 5.384 8 C 0.028 3.972 9 C 0.053 3.947 10 C -0.188 4.188 11 C -0.187 4.187 12 C -0.542 4.542 13 H 0.076 0.924 14 C -0.136 4.136 15 N -0.524 5.524 16 Si 0.721 3.279 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C 0.299 3.701 21 O -0.407 6.407 22 N -0.377 5.377 23 C 0.038 3.962 24 C -0.110 4.110 25 C -0.118 4.118 26 C -0.140 4.140 27 C -0.131 4.131 28 C -0.140 4.140 29 C -0.119 4.119 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.239 0.761 34 H 0.230 0.770 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.025 0.975 38 H 0.103 0.897 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.103 0.897 42 H 0.025 0.975 43 H 0.069 0.931 44 H 0.239 0.761 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.143 0.857 48 H 0.142 0.858 49 H 0.141 0.859 50 H 0.142 0.858 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.490 2.479 29.877 30.901 hybrid contribution 0.074 -0.021 -0.652 0.657 sum -7.416 2.458 29.225 30.251 Atomic orbital electron populations 1.22174 0.93211 1.02947 1.03498 1.20443 0.95224 0.97826 0.82663 0.86847 1.44837 1.72717 1.14239 1.07862 1.15966 0.78564 0.85021 0.80240 1.90872 1.58013 1.14389 1.84791 1.45492 1.69116 1.14198 1.09615 1.21590 1.00026 0.94945 0.80603 1.18391 0.92233 0.92195 0.91864 1.21817 0.98580 1.00108 0.98248 1.21811 0.98123 0.99742 0.99023 1.21019 1.43652 0.96263 0.93261 0.92358 1.24883 0.95078 0.94883 0.98732 1.69822 1.44801 1.08901 1.28919 0.86521 0.77612 0.80169 0.83605 1.19760 1.21107 1.21114 1.20824 0.79927 0.84648 0.84748 1.90720 1.37340 1.26138 1.86535 1.45980 1.54282 1.32532 1.04907 1.20200 0.99573 0.95619 0.80800 1.19882 0.95789 0.97985 0.97325 1.21159 0.99729 0.95127 0.95820 1.21206 0.96494 1.00010 0.96280 1.21260 0.94899 0.97145 0.99795 1.21198 1.00081 0.96501 0.96263 1.21139 0.95298 0.99581 0.95844 0.90261 0.91924 0.91545 0.76090 0.77010 0.92908 0.92933 0.97467 0.89669 0.95468 0.95468 0.89684 0.97499 0.93110 0.76122 0.90402 0.90400 0.85692 0.85779 0.85928 0.85806 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.38 37.16 0.35 -1.18 16 2 C 0.15 1.72 2.98 -69.08 -0.21 1.52 16 3 H 0.11 1.38 7.58 -51.93 -0.39 0.98 16 4 N -0.74 -10.59 4.96 -59.81 -0.30 -10.89 16 5 C 0.70 12.76 8.53 -86.92 -0.74 12.02 16 6 O -0.60 -12.74 16.01 5.29 0.08 -12.65 16 7 N -0.73 -13.63 4.96 -65.23 -0.32 -13.95 16 8 C 0.15 3.30 4.50 -4.04 -0.02 3.28 16 9 C 0.05 1.28 0.50 -155.66 -0.08 1.20 16 10 C -0.13 -3.01 8.08 37.16 0.30 -2.71 16 11 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 12 C -0.50 -13.33 8.01 -34.44 -0.28 -13.60 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 15 N -0.89 -23.87 9.35 55.43 0.52 -23.35 16 16 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C 0.51 5.63 7.22 -10.99 -0.08 5.55 16 21 O -0.53 -7.65 15.84 5.56 0.09 -7.56 16 22 N -0.72 -5.55 5.44 -61.47 -0.33 -5.89 16 23 C 0.16 1.17 5.80 -5.19 -0.03 1.14 16 24 C -0.11 -0.68 5.25 -104.62 -0.55 -1.23 16 25 C -0.10 -0.60 9.70 -39.59 -0.38 -0.99 16 26 C -0.12 -0.67 10.05 -39.58 -0.40 -1.06 16 27 C -0.11 -0.58 10.05 -39.58 -0.40 -0.98 16 28 C -0.12 -0.64 10.05 -39.58 -0.40 -1.04 16 29 C -0.10 -0.58 9.70 -39.58 -0.38 -0.96 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.44 7.56 -51.93 -0.39 0.05 16 33 H 0.40 5.48 7.80 -40.82 -0.32 5.17 16 34 H 0.40 6.80 6.18 -40.82 -0.25 6.55 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 38 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 42 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 43 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 44 H 0.40 2.30 7.88 -40.82 -0.32 1.98 16 45 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 46 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 47 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 48 H 0.12 0.47 8.06 -52.49 -0.42 0.05 16 49 H 0.12 0.41 8.06 -52.49 -0.42 -0.01 16 50 H 0.12 0.44 8.06 -52.48 -0.42 0.02 16 51 H 0.12 0.59 8.06 -52.49 -0.42 0.16 16 LS Contribution 414.67 15.07 6.25 6.25 Total: -1.00 -31.63 414.67 -10.17 -41.80 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -8.05 Total: 10.42 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -3.08 Total: -0.07 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.44 Total: -54.07 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: 0.17 Total: -20.21 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.63 -10.17 -41.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457945631.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.894 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds