Wall clock time and date at job start Wed Apr 1 2020 04:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46724 * 2 1 4 4 N 1.46496 * 109.47432 * 239.99981 * 2 1 3 5 5 C 1.34773 * 120.00632 * 84.99566 * 4 2 1 6 6 O 1.21590 * 119.99724 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00236 * 179.97438 * 5 4 2 8 8 C 1.46504 * 119.99587 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46712 * 180.02562 * 8 7 5 10 10 C 1.53004 * 109.47013 * 299.99473 * 9 8 7 11 11 C 1.53002 * 109.47568 * 59.99350 * 9 8 7 12 12 C 1.50696 * 109.47237 * 179.97438 * 9 8 7 13 13 H 1.08002 * 119.99759 * 359.97438 * 12 9 8 14 14 C 1.37875 * 120.00137 * 179.97438 * 12 9 8 15 15 N 1.31515 * 120.00214 * 359.97438 * 14 12 9 16 16 Si 1.86806 * 120.00099 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.47111 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46964 * 119.99831 * 16 14 12 19 19 H 1.48490 * 109.47152 * 240.00087 * 16 14 12 20 20 C 1.50702 * 109.46903 * 119.99249 * 2 1 3 21 21 O 1.21282 * 119.99683 * 120.00730 * 20 2 1 22 22 N 1.34769 * 120.00461 * 300.00121 * 20 2 1 23 23 C 1.46500 * 120.00237 * 180.02562 * 22 20 2 24 24 C 1.50706 * 109.46949 * 180.02562 * 23 22 20 25 25 C 1.38231 * 119.99884 * 269.72390 * 24 23 22 26 26 C 1.38232 * 119.99941 * 179.77036 * 25 24 23 27 27 C 1.38241 * 119.99990 * 0.48356 * 26 25 24 28 28 C 1.38238 * 119.99720 * 359.79405 * 27 26 25 29 29 C 1.38234 * 120.00071 * 359.95221 * 28 27 26 30 30 H 1.09001 * 109.47194 * 60.00658 * 1 2 3 31 31 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 300.00478 * 1 2 3 33 33 H 0.97008 * 119.99554 * 264.99769 * 4 2 1 34 34 H 0.96996 * 120.00335 * 359.97438 * 7 5 4 35 35 H 1.09000 * 109.47327 * 299.99580 * 8 7 5 36 36 H 1.08991 * 109.47385 * 60.00231 * 8 7 5 37 37 H 1.09002 * 109.46838 * 59.99877 * 10 9 8 38 38 H 1.08999 * 109.47526 * 179.97438 * 10 9 8 39 39 H 1.09003 * 109.47287 * 300.00724 * 10 9 8 40 40 H 1.08998 * 109.46299 * 60.00112 * 11 9 8 41 41 H 1.08997 * 109.46898 * 180.02562 * 11 9 8 42 42 H 1.08997 * 109.47267 * 300.00173 * 11 9 8 43 43 H 0.97000 * 119.99795 * 180.02562 * 15 14 12 44 44 H 0.97010 * 119.99854 * 0.02562 * 22 20 2 45 45 H 1.09000 * 109.46609 * 60.00363 * 23 22 20 46 46 H 1.09000 * 109.47175 * 300.00158 * 23 22 20 47 47 H 1.07997 * 120.00101 * 0.02562 * 25 24 23 48 48 H 1.08002 * 120.00590 * 180.25684 * 26 25 24 49 49 H 1.08002 * 120.00430 * 179.77088 * 27 26 25 50 50 H 1.08003 * 119.99825 * 179.97438 * 28 27 26 51 51 H 1.07997 * 119.99984 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8583 1.1614 -2.4117 7 7 2.5969 -0.6537 -3.4574 8 6 2.7373 0.0773 -4.7192 9 6 3.2617 -0.8690 -5.8011 10 6 4.6240 -1.4224 -5.3780 11 6 2.2774 -2.0253 -5.9881 12 6 3.4056 -0.1174 -7.0993 13 1 3.1483 0.9304 -7.1479 14 6 3.8656 -0.7673 -8.2248 15 7 4.1794 -2.0431 -8.1655 16 14 4.0433 0.1642 -9.8343 17 1 3.6272 1.5761 -9.6375 18 1 5.4602 0.1223 -10.2766 19 1 3.1831 -0.4653 -10.8681 20 6 2.0323 -0.7103 1.2306 21 8 2.7297 -1.6963 1.1194 22 7 1.7067 -0.2498 2.4546 23 6 2.1955 -0.9399 3.6508 24 6 1.6925 -0.2298 4.8812 25 6 2.4414 0.7839 5.4489 26 6 1.9778 1.4385 6.5747 27 6 0.7699 1.0726 7.1387 28 6 0.0237 0.0549 6.5744 29 6 0.4848 -0.5961 5.4455 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2491 -1.6318 -1.1524 34 1 2.8284 -1.5946 -3.4136 35 1 1.7668 0.4712 -5.0209 36 1 3.4383 0.9012 -4.5858 37 1 4.5195 -1.9661 -4.4390 38 1 4.9974 -2.0970 -6.1484 39 1 5.3253 -0.5987 -5.2446 40 1 1.3069 -1.6310 -6.2896 41 1 2.6512 -2.6997 -6.7585 42 1 2.1729 -2.5691 -5.0493 43 1 4.5034 -2.5002 -8.9573 44 1 1.1487 0.5388 2.5435 45 1 3.2855 -0.9394 3.6506 46 1 1.8326 -1.9678 3.6511 47 1 3.3868 1.0673 5.0104 48 1 2.5609 2.2334 7.0158 49 1 0.4094 1.5815 8.0205 50 1 -0.9198 -0.2312 7.0153 51 1 -0.0980 -1.3914 5.0049 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457945631.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:23 Heat of formation + Delta-G solvation = -69.660186 kcal Electronic energy + Delta-G solvation = -29605.109373 eV Core-core repulsion = 25503.241900 eV Total energy + Delta-G solvation = -4101.867472 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.59262 -40.67987 -39.93406 -38.24917 -36.18733 -35.94239 -34.99113 -33.08076 -32.42283 -31.79295 -30.99134 -27.54922 -27.43790 -27.35796 -26.68657 -24.93368 -23.47692 -22.33796 -22.05848 -21.35621 -20.56470 -19.97107 -18.43364 -17.80811 -17.52734 -17.40641 -16.85183 -16.60139 -16.47837 -16.42182 -15.90682 -15.78210 -15.37279 -15.24593 -14.75856 -14.70350 -14.56320 -14.30012 -13.99737 -13.96195 -13.85913 -13.48465 -13.40307 -13.33588 -13.16559 -13.08937 -12.71496 -12.61027 -12.54805 -12.23700 -12.12168 -12.01059 -11.91683 -11.46741 -11.38559 -11.16204 -11.08916 -10.68058 -10.41631 -10.35048 -10.21843 -9.82783 -9.78405 -9.69786 -8.00287 -6.15950 0.28720 0.49514 1.42932 1.43377 1.46627 1.55001 1.59512 2.14214 2.27164 2.48055 2.92532 3.23379 3.35912 3.58463 3.67972 3.92847 4.03378 4.12453 4.15521 4.30590 4.37503 4.43418 4.56073 4.58867 4.62100 4.69022 4.73139 4.77925 4.79867 5.01379 5.06487 5.07940 5.12361 5.16088 5.19983 5.22073 5.26336 5.38837 5.41541 5.54905 5.62933 5.63372 5.64168 5.68588 5.69356 6.01796 6.08211 6.15839 6.23525 6.37588 6.45234 6.88619 7.03339 7.11237 7.51662 7.59764 8.98993 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.032960 B = 0.001580 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.312944 B =17720.829180 C =17838.263592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.144 3.856 3 H 0.110 0.890 4 N -0.726 5.726 5 C 0.703 3.297 6 O -0.632 6.632 7 N -0.727 5.727 8 C 0.169 3.831 9 C 0.048 3.952 10 C -0.119 4.119 11 C -0.118 4.118 12 C -0.525 4.525 13 H 0.047 0.953 14 C 0.027 3.973 15 N -0.900 5.900 16 Si 0.947 3.053 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.519 3.481 21 O -0.568 6.568 22 N -0.705 5.705 23 C 0.164 3.836 24 C -0.115 4.115 25 C -0.111 4.111 26 C -0.130 4.130 27 C -0.118 4.118 28 C -0.129 4.129 29 C -0.107 4.107 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.409 0.591 34 H 0.404 0.596 35 H 0.039 0.961 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.062 0.938 39 H 0.018 0.982 40 H 0.020 0.980 41 H 0.061 0.939 42 H 0.034 0.966 43 H 0.260 0.740 44 H 0.416 0.584 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.128 0.872 48 H 0.138 0.862 49 H 0.141 0.859 50 H 0.141 0.859 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.762 2.390 32.164 33.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.035 3.965 3 H 0.127 0.873 4 N -0.384 5.384 5 C 0.403 3.597 6 O -0.514 6.514 7 N -0.382 5.382 8 C 0.045 3.955 9 C 0.048 3.952 10 C -0.177 4.177 11 C -0.176 4.176 12 C -0.564 4.564 13 H 0.065 0.935 14 C -0.173 4.173 15 N -0.539 5.539 16 Si 0.773 3.227 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.305 3.695 21 O -0.447 6.447 22 N -0.357 5.357 23 C 0.041 3.959 24 C -0.116 4.116 25 C -0.129 4.129 26 C -0.148 4.148 27 C -0.136 4.136 28 C -0.147 4.147 29 C -0.125 4.125 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.246 0.754 34 H 0.240 0.760 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.037 0.963 40 H 0.039 0.961 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.253 0.747 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.146 0.854 48 H 0.156 0.844 49 H 0.158 0.842 50 H 0.159 0.841 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.444 2.600 31.913 33.113 hybrid contribution 0.343 -0.038 -1.137 1.188 sum -8.101 2.562 30.776 31.927 Atomic orbital electron populations 1.22121 0.91302 1.03466 1.04153 1.20661 0.96655 0.97316 0.81882 0.87260 1.44754 1.71717 1.14416 1.07494 1.16004 0.78209 0.84632 0.80834 1.90851 1.59323 1.15854 1.85388 1.45236 1.69552 1.14386 1.08982 1.21134 0.98662 0.94227 0.81472 1.18402 0.92808 0.92542 0.91480 1.21657 0.97895 0.99436 0.98706 1.21643 0.97260 0.99081 0.99623 1.21283 1.44054 0.96091 0.94926 0.93516 1.25472 0.94961 0.95646 1.01207 1.69927 1.44882 1.09613 1.29487 0.85683 0.77495 0.79002 0.80474 1.19862 1.20846 1.20755 1.20623 0.79518 0.84070 0.85293 1.90711 1.39168 1.27788 1.87026 1.45852 1.53345 1.32420 1.04106 1.20186 0.99115 0.95667 0.80882 1.19778 0.96314 0.98383 0.97097 1.21294 0.99997 0.95333 0.96294 1.21445 0.96904 1.00336 0.96128 1.21560 0.94697 0.97058 1.00261 1.21465 1.00791 0.96341 0.96060 1.21302 0.95182 0.99880 0.96139 0.92320 0.91442 0.88155 0.75413 0.76003 0.94209 0.94502 0.94851 0.91919 0.96314 0.96113 0.91987 0.94739 0.93089 0.74712 0.91205 0.90554 0.85427 0.84415 0.84155 0.84133 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.38 71.98 0.68 -1.95 16 2 C 0.14 3.16 2.98 44.25 0.13 3.29 16 3 H 0.11 2.54 7.58 -2.39 -0.02 2.53 16 4 N -0.73 -20.12 4.96 -461.42 -2.29 -22.41 16 5 C 0.70 25.14 8.53 179.06 1.53 26.67 16 6 O -0.63 -26.73 16.01 -4.00 -0.06 -26.79 16 7 N -0.73 -26.60 4.96 -478.54 -2.37 -28.98 16 8 C 0.17 7.41 4.50 86.38 0.39 7.80 16 9 C 0.05 2.29 0.50 -52.93 -0.03 2.27 16 10 C -0.12 -5.48 8.08 71.98 0.58 -4.90 16 11 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 12 C -0.52 -28.09 8.01 25.60 0.21 -27.88 16 13 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 14 C 0.03 1.42 5.15 84.65 0.44 1.86 16 15 N -0.90 -48.66 9.35 21.45 0.20 -48.46 16 16 Si 0.95 43.04 29.54 68.60 2.03 45.06 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 C 0.52 10.72 7.22 87.66 0.63 11.35 16 21 O -0.57 -15.86 15.84 -3.04 -0.05 -15.91 16 22 N -0.70 -9.66 5.44 -466.78 -2.54 -12.20 16 23 C 0.16 2.20 5.80 85.63 0.50 2.70 16 24 C -0.12 -1.28 5.25 -19.86 -0.10 -1.38 16 25 C -0.11 -1.20 9.70 22.27 0.22 -0.98 16 26 C -0.13 -1.20 10.05 22.27 0.22 -0.98 16 27 C -0.12 -0.97 10.05 22.27 0.22 -0.74 16 28 C -0.13 -1.08 10.05 22.27 0.22 -0.86 16 29 C -0.11 -1.03 9.70 22.27 0.22 -0.82 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 1.03 7.56 -2.39 -0.02 1.01 16 33 H 0.41 10.62 7.80 -92.70 -0.72 9.90 16 34 H 0.40 13.30 6.18 -92.71 -0.57 12.72 16 35 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.03 1.31 6.86 -2.39 -0.02 1.29 16 38 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 39 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 42 H 0.03 1.33 6.86 -2.39 -0.02 1.31 16 43 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 44 H 0.42 3.81 7.88 -92.70 -0.73 3.08 16 45 H 0.07 1.07 8.08 -2.39 -0.02 1.06 16 46 H 0.08 1.08 8.08 -2.39 -0.02 1.06 16 47 H 0.13 1.23 8.06 -2.91 -0.02 1.20 16 48 H 0.14 0.81 8.06 -2.91 -0.02 0.78 16 49 H 0.14 0.59 8.06 -2.91 -0.02 0.56 16 50 H 0.14 0.64 8.06 -2.91 -0.02 0.62 16 51 H 0.13 0.99 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -67.80 414.67 0.47 -67.32 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: -1.07 Total: 31.70 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 6.63 Total: 10.66 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -7.00 Total: -112.05 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -0.11 Total: -42.70 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -67.80 0.47 -67.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457945631.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.337 kcal (2) G-P(sol) polarization free energy of solvation -67.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds