Wall clock time and date at job start Wed Apr 1 2020 05:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21278 * 120.00081 * 2 1 4 4 N 1.34777 * 119.99256 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99302 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46924 * 179.97438 * 5 4 2 7 7 N 1.46901 * 109.47169 * 179.97438 * 6 5 4 8 8 C 1.46896 * 111.00165 * 66.04695 * 7 6 5 9 9 C 1.46905 * 111.00255 * 190.00063 * 7 6 5 10 10 H 1.09001 * 109.47045 * 300.24340 * 9 7 6 11 11 C 1.53000 * 109.47059 * 60.23681 * 9 7 6 12 12 C 1.50697 * 109.47455 * 180.23830 * 9 7 6 13 13 O 1.21282 * 119.99854 * 334.02450 * 12 9 7 14 14 N 1.34773 * 119.99898 * 154.01808 * 12 9 7 15 15 C 1.46501 * 120.00150 * 5.55714 * 14 12 9 16 16 C 1.50705 * 109.46746 * 89.99985 * 15 14 12 17 17 H 1.08006 * 120.00123 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99867 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99710 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00073 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47373 * 90.00126 * 20 18 16 22 22 H 1.48501 * 109.47066 * 210.00018 * 20 18 16 23 23 H 1.48501 * 109.46936 * 329.99573 * 20 18 16 24 24 C 1.39929 * 119.99850 * 185.56146 * 14 12 9 25 25 C 1.38865 * 120.07052 * 6.84282 * 24 14 12 26 26 C 1.38114 * 119.93116 * 179.76890 * 25 24 14 27 27 C 1.38287 * 120.06485 * 0.48834 * 26 25 24 28 28 C 1.38281 * 120.14359 * 359.76693 * 27 26 25 29 29 C 1.38112 * 120.07064 * 0.02562 * 28 27 26 30 30 H 1.08993 * 109.47100 * 239.99906 * 1 2 3 31 31 H 1.08997 * 109.46658 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.47283 * 119.99576 * 1 2 3 33 33 H 0.96991 * 120.00779 * 0.02562 * 4 2 1 34 34 H 1.09002 * 109.47407 * 60.00220 * 5 4 2 35 35 H 1.08998 * 109.47565 * 299.99292 * 5 4 2 36 36 H 1.08998 * 109.47285 * 60.00022 * 6 5 4 37 37 H 1.09001 * 109.47236 * 300.00035 * 6 5 4 38 38 H 1.08994 * 109.47105 * 178.71977 * 8 7 6 39 39 H 1.09004 * 109.47204 * 298.72092 * 8 7 6 40 40 H 1.08995 * 109.47276 * 58.71737 * 8 7 6 41 41 H 1.08998 * 109.47443 * 172.69887 * 11 9 7 42 42 H 1.09006 * 109.47321 * 292.69797 * 11 9 7 43 43 H 1.08999 * 109.47211 * 52.69397 * 11 9 7 44 44 H 1.08992 * 109.47179 * 209.99594 * 15 14 12 45 45 H 1.08993 * 109.47037 * 330.00507 * 15 14 12 46 46 H 0.97008 * 119.99771 * 179.97438 * 19 18 16 47 47 H 1.08009 * 120.03679 * 359.97438 * 25 24 14 48 48 H 1.08002 * 119.96803 * 180.25825 * 26 25 24 49 49 H 1.08007 * 119.92713 * 179.74636 * 27 26 25 50 50 H 1.07992 * 119.96241 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.03797 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.1558 -2.6098 -0.0001 7 7 5.6248 -2.6099 -0.0001 8 6 6.1513 -2.0533 1.2532 9 6 6.1512 -3.9605 -0.2384 10 1 5.7982 -4.6315 0.5447 11 6 5.6654 -4.4646 -1.5989 12 6 7.6576 -3.9221 -0.2257 13 8 8.2405 -2.8967 -0.5082 14 7 8.3572 -5.0271 0.0998 15 6 7.6601 -6.2963 0.3223 16 6 7.5601 -7.0493 -0.9794 17 1 7.9748 -6.6250 -1.8819 18 6 6.9393 -8.2797 -1.0180 19 7 6.8516 -8.9366 -2.1540 20 14 6.2216 -9.0132 0.5429 21 1 4.8080 -8.5820 0.6879 22 1 6.2817 -10.4950 0.4666 23 1 7.0046 -8.5458 1.7149 24 6 9.7493 -4.9621 0.2253 25 6 10.3977 -3.7361 0.1557 26 6 11.7715 -3.6748 0.2847 27 6 12.5021 -4.8337 0.4730 28 6 11.8599 -6.0567 0.5375 29 6 10.4860 -6.1242 0.4135 30 1 -0.3633 -0.5138 0.8899 31 1 -0.3632 1.0277 -0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 1.6958 -2.0073 -0.0013 34 1 4.0089 -0.6541 0.8905 35 1 4.0096 -0.6530 -0.8895 36 1 3.7928 -3.1235 -0.8903 37 1 3.7921 -3.1239 0.8896 38 1 7.2406 -2.0861 1.2359 39 1 5.8205 -1.0200 1.3591 40 1 5.7834 -2.6405 2.0944 41 1 6.1577 -5.4083 -1.8337 42 1 4.5864 -4.6160 -1.5662 43 1 5.9058 -3.7286 -2.3660 44 1 8.2149 -6.8936 1.0457 45 1 6.6591 -6.0987 0.7055 46 1 6.4152 -9.8025 -2.1811 47 1 9.8281 -2.8311 0.0040 48 1 12.2760 -2.7211 0.2348 49 1 13.5766 -4.7836 0.5695 50 1 12.4333 -6.9599 0.6842 51 1 9.9850 -7.0797 0.4635 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575294695.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:57 Heat of formation + Delta-G solvation = -13.063539 kcal Electronic energy + Delta-G solvation = -31346.767232 eV Core-core repulsion = 27247.353974 eV Total energy + Delta-G solvation = -4099.413258 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.60122 -39.74871 -38.43806 -37.07234 -35.46146 -34.80037 -32.76163 -31.68964 -30.54144 -30.38741 -29.36327 -28.43546 -27.90235 -25.14961 -24.18306 -23.18685 -22.25285 -21.51438 -21.02112 -20.48478 -18.74340 -17.31944 -17.20491 -16.93385 -16.61700 -16.46421 -16.00954 -15.56816 -15.24674 -15.10121 -14.57720 -14.46904 -14.09512 -13.90832 -13.66398 -13.47739 -13.43676 -13.16868 -12.92330 -12.84714 -12.64618 -12.50773 -12.36967 -12.15300 -12.00341 -11.79932 -11.71337 -11.57852 -11.23794 -11.14278 -11.03259 -10.91345 -10.78233 -10.69988 -10.44240 -10.12253 -9.84393 -9.33266 -9.25410 -8.89682 -8.78646 -8.40505 -8.23632 -7.26804 -6.37625 -4.40464 1.78752 1.94251 2.44302 2.86312 3.02596 3.09123 3.11660 3.14284 3.40481 4.09313 4.10739 4.41908 4.55459 4.72406 4.82098 4.89990 4.94085 4.99412 5.06664 5.28153 5.33366 5.35710 5.40896 5.48596 5.50755 5.54479 5.63433 5.65635 5.76499 5.87568 5.96606 6.01599 6.05136 6.12783 6.13513 6.18573 6.27427 6.31815 6.40803 6.59401 6.80618 6.86945 6.92711 7.01043 7.07090 7.08143 7.14207 7.20234 7.27727 7.70096 7.86313 8.01374 8.19792 8.60857 8.69505 9.18751 10.73926 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009749 B = 0.003217 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.530371 B = 8702.792352 C =10991.725149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.509 3.491 3 O -0.547 6.547 4 N -0.731 5.731 5 C 0.121 3.879 6 C 0.042 3.958 7 N -0.517 5.517 8 C 0.013 3.987 9 C 0.076 3.924 10 H 0.066 0.934 11 C -0.154 4.154 12 C 0.527 3.473 13 O -0.518 6.518 14 N -0.531 5.531 15 C 0.197 3.803 16 C -0.542 4.542 17 H 0.084 0.916 18 C 0.083 3.917 19 N -0.881 5.881 20 Si 0.865 3.135 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.264 1.264 24 C 0.170 3.830 25 C -0.174 4.174 26 C -0.107 4.107 27 C -0.160 4.160 28 C -0.104 4.104 29 C -0.145 4.145 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.401 0.599 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.039 0.961 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.022 0.978 41 H 0.110 0.890 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.043 0.957 45 H 0.037 0.963 46 H 0.269 0.731 47 H 0.173 0.827 48 H 0.115 0.885 49 H 0.111 0.889 50 H 0.118 0.882 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.915 8.416 7.223 13.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.296 3.704 3 O -0.424 6.424 4 N -0.384 5.384 5 C -0.003 4.003 6 C -0.087 4.087 7 N -0.242 5.242 8 C -0.135 4.135 9 C -0.035 4.035 10 H 0.084 0.916 11 C -0.212 4.212 12 C 0.317 3.683 13 O -0.396 6.396 14 N -0.251 5.251 15 C 0.077 3.923 16 C -0.580 4.580 17 H 0.102 0.898 18 C -0.122 4.122 19 N -0.517 5.517 20 Si 0.691 3.309 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.188 1.188 24 C 0.074 3.926 25 C -0.193 4.193 26 C -0.126 4.126 27 C -0.179 4.179 28 C -0.122 4.122 29 C -0.165 4.165 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.235 0.765 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.040 0.960 41 H 0.129 0.871 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.079 0.921 47 H 0.190 0.810 48 H 0.133 0.867 49 H 0.129 0.871 50 H 0.136 0.864 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.184 9.814 6.590 13.341 hybrid contribution -0.900 -1.848 1.381 2.476 sum -7.084 7.966 7.970 13.310 Atomic orbital electron populations 1.21917 0.91668 1.05506 1.04264 1.20794 0.90592 0.83400 0.75659 1.90739 1.70920 1.31419 1.49350 1.46000 1.07678 1.08858 1.75837 1.21313 0.78697 0.96945 1.03301 1.22311 0.88403 0.95892 1.02070 1.61647 1.05766 1.21384 1.35406 1.22599 1.02316 0.99767 0.88786 1.21581 0.91676 0.89257 1.00971 0.91637 1.22064 1.01222 1.04344 0.93531 1.20362 0.89545 0.82449 0.75987 1.90336 1.69859 1.32134 1.47287 1.45679 1.04647 1.11388 1.63360 1.20114 0.92435 0.80663 0.99081 1.21192 1.39292 1.03402 0.94089 0.89814 1.24816 0.95174 0.96345 0.95877 1.69877 1.42211 1.14411 1.25196 0.87025 0.80262 0.79494 0.84134 1.19737 1.20568 1.18840 1.18027 0.82682 0.94249 0.97643 1.22504 0.95045 0.99213 1.02560 1.21019 0.93958 0.97793 0.99845 1.20994 0.99192 0.93041 1.04659 1.20860 0.93848 0.97438 1.00102 1.21071 0.93950 0.97861 1.03616 0.89454 0.89016 0.89332 0.76533 0.91384 0.90275 0.89219 0.94250 0.90033 0.90986 0.95985 0.87127 0.92360 0.91810 0.93948 0.94575 0.92092 0.81042 0.86678 0.87060 0.86438 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 10.32 36.01 0.37 -0.66 16 2 C 0.51 5.34 7.94 -10.98 -0.09 5.25 16 3 O -0.55 -8.45 17.09 5.56 0.09 -8.35 16 4 N -0.73 -6.58 5.56 -60.29 -0.33 -6.92 16 5 C 0.12 1.36 5.60 -4.04 -0.02 1.34 16 6 C 0.04 0.47 4.89 -3.82 -0.02 0.45 16 7 N -0.52 -7.51 4.38 -236.29 -1.03 -8.54 16 8 C 0.01 0.18 8.92 60.06 0.54 0.72 16 9 C 0.08 1.26 1.75 -68.86 -0.12 1.14 16 10 H 0.07 1.06 6.17 -51.93 -0.32 0.74 16 11 C -0.15 -2.60 8.71 37.16 0.32 -2.28 16 12 C 0.53 10.17 5.72 -10.99 -0.06 10.11 16 13 O -0.52 -10.66 11.62 5.56 0.06 -10.59 16 14 N -0.53 -10.69 2.68 -114.74 -0.31 -11.00 16 15 C 0.20 4.08 3.35 -5.19 -0.02 4.06 16 16 C -0.54 -13.09 7.54 -34.44 -0.26 -13.35 16 17 H 0.08 2.33 7.92 -52.48 -0.42 1.91 16 18 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.88 -23.83 13.96 55.43 0.77 -23.05 16 20 Si 0.86 18.25 27.47 -169.99 -4.67 13.58 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 23 H -0.26 -5.30 6.54 56.52 0.37 -4.93 16 24 C 0.17 3.38 6.49 -83.69 -0.54 2.83 16 25 C -0.17 -3.25 8.99 -39.39 -0.35 -3.61 16 26 C -0.11 -1.74 10.04 -39.61 -0.40 -2.13 16 27 C -0.16 -2.44 10.04 -39.55 -0.40 -2.83 16 28 C -0.10 -1.69 10.04 -39.61 -0.40 -2.08 16 29 C -0.14 -2.73 9.15 -39.39 -0.36 -3.09 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.57 8.12 -51.93 -0.42 0.15 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.40 2.41 8.47 -40.82 -0.35 2.06 16 34 H 0.07 0.82 6.58 -51.93 -0.34 0.48 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 0.97 5.99 -51.93 -0.31 0.66 16 37 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 38 H 0.08 1.28 5.86 -51.93 -0.30 0.98 16 39 H 0.07 0.89 6.53 -51.93 -0.34 0.55 16 40 H 0.02 0.27 8.13 -51.93 -0.42 -0.15 16 41 H 0.11 2.24 5.34 -51.93 -0.28 1.96 16 42 H 0.06 0.83 6.60 -51.93 -0.34 0.49 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.04 0.88 5.59 -51.93 -0.29 0.59 16 45 H 0.04 0.71 5.22 -51.93 -0.27 0.44 16 46 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 47 H 0.17 3.37 4.68 -55.40 -0.26 3.11 16 48 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 49 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 50 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 51 H 0.14 2.65 6.27 -52.49 -0.33 2.32 16 LS Contribution 399.09 15.07 6.01 6.01 Total: -1.00 -30.70 399.09 -8.84 -39.54 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -7.54 Total: 11.48 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.91 Total: -2.16 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.90 Total: -49.51 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.16 Total: -18.94 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -4.67 Total: 13.58 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.70 -8.84 -39.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575294695.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.476 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds