Wall clock time and date at job start Wed Apr 1 2020 05:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21278 * 120.00081 * 2 1 4 4 N 1.34777 * 119.99256 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99302 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46924 * 179.97438 * 5 4 2 7 7 N 1.46901 * 109.47169 * 179.97438 * 6 5 4 8 8 C 1.46896 * 111.00165 * 66.04695 * 7 6 5 9 9 C 1.46905 * 111.00255 * 190.00063 * 7 6 5 10 10 H 1.09001 * 109.47045 * 300.24340 * 9 7 6 11 11 C 1.53000 * 109.47059 * 60.23681 * 9 7 6 12 12 C 1.50697 * 109.47455 * 180.23830 * 9 7 6 13 13 O 1.21282 * 119.99854 * 334.02450 * 12 9 7 14 14 N 1.34773 * 119.99898 * 154.01808 * 12 9 7 15 15 C 1.46501 * 120.00150 * 5.55714 * 14 12 9 16 16 C 1.50705 * 109.46746 * 89.99985 * 15 14 12 17 17 H 1.08006 * 120.00123 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99867 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99710 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00073 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47373 * 90.00126 * 20 18 16 22 22 H 1.48501 * 109.47066 * 210.00018 * 20 18 16 23 23 H 1.48501 * 109.46936 * 329.99573 * 20 18 16 24 24 C 1.39929 * 119.99850 * 185.56146 * 14 12 9 25 25 C 1.38865 * 120.07052 * 6.84282 * 24 14 12 26 26 C 1.38114 * 119.93116 * 179.76890 * 25 24 14 27 27 C 1.38287 * 120.06485 * 0.48834 * 26 25 24 28 28 C 1.38281 * 120.14359 * 359.76693 * 27 26 25 29 29 C 1.38112 * 120.07064 * 0.02562 * 28 27 26 30 30 H 1.08993 * 109.47100 * 239.99906 * 1 2 3 31 31 H 1.08997 * 109.46658 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.47283 * 119.99576 * 1 2 3 33 33 H 0.96991 * 120.00779 * 0.02562 * 4 2 1 34 34 H 1.09002 * 109.47407 * 60.00220 * 5 4 2 35 35 H 1.08998 * 109.47565 * 299.99292 * 5 4 2 36 36 H 1.08998 * 109.47285 * 60.00022 * 6 5 4 37 37 H 1.09001 * 109.47236 * 300.00035 * 6 5 4 38 38 H 1.08994 * 109.47105 * 178.71977 * 8 7 6 39 39 H 1.09004 * 109.47204 * 298.72092 * 8 7 6 40 40 H 1.08995 * 109.47276 * 58.71737 * 8 7 6 41 41 H 1.08998 * 109.47443 * 172.69887 * 11 9 7 42 42 H 1.09006 * 109.47321 * 292.69797 * 11 9 7 43 43 H 1.08999 * 109.47211 * 52.69397 * 11 9 7 44 44 H 1.08992 * 109.47179 * 209.99594 * 15 14 12 45 45 H 1.08993 * 109.47037 * 330.00507 * 15 14 12 46 46 H 0.97008 * 119.99771 * 179.97438 * 19 18 16 47 47 H 1.08009 * 120.03679 * 359.97438 * 25 24 14 48 48 H 1.08002 * 119.96803 * 180.25825 * 26 25 24 49 49 H 1.08007 * 119.92713 * 179.74636 * 27 26 25 50 50 H 1.07992 * 119.96241 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.03797 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.1558 -2.6098 -0.0001 7 7 5.6248 -2.6099 -0.0001 8 6 6.1513 -2.0533 1.2532 9 6 6.1512 -3.9605 -0.2384 10 1 5.7982 -4.6315 0.5447 11 6 5.6654 -4.4646 -1.5989 12 6 7.6576 -3.9221 -0.2257 13 8 8.2405 -2.8967 -0.5082 14 7 8.3572 -5.0271 0.0998 15 6 7.6601 -6.2963 0.3223 16 6 7.5601 -7.0493 -0.9794 17 1 7.9748 -6.6250 -1.8819 18 6 6.9393 -8.2797 -1.0180 19 7 6.8516 -8.9366 -2.1540 20 14 6.2216 -9.0132 0.5429 21 1 4.8080 -8.5820 0.6879 22 1 6.2817 -10.4950 0.4666 23 1 7.0046 -8.5458 1.7149 24 6 9.7493 -4.9621 0.2253 25 6 10.3977 -3.7361 0.1557 26 6 11.7715 -3.6748 0.2847 27 6 12.5021 -4.8337 0.4730 28 6 11.8599 -6.0567 0.5375 29 6 10.4860 -6.1242 0.4135 30 1 -0.3633 -0.5138 0.8899 31 1 -0.3632 1.0277 -0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 1.6958 -2.0073 -0.0013 34 1 4.0089 -0.6541 0.8905 35 1 4.0096 -0.6530 -0.8895 36 1 3.7928 -3.1235 -0.8903 37 1 3.7921 -3.1239 0.8896 38 1 7.2406 -2.0861 1.2359 39 1 5.8205 -1.0200 1.3591 40 1 5.7834 -2.6405 2.0944 41 1 6.1577 -5.4083 -1.8337 42 1 4.5864 -4.6160 -1.5662 43 1 5.9058 -3.7286 -2.3660 44 1 8.2149 -6.8936 1.0457 45 1 6.6591 -6.0987 0.7055 46 1 6.4152 -9.8025 -2.1811 47 1 9.8281 -2.8311 0.0040 48 1 12.2760 -2.7211 0.2348 49 1 13.5766 -4.7836 0.5695 50 1 12.4333 -6.9599 0.6842 51 1 9.9850 -7.0797 0.4635 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575294695.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:56 Heat of formation + Delta-G solvation = -34.423044 kcal Electronic energy + Delta-G solvation = -31347.693449 eV Core-core repulsion = 27247.353974 eV Total energy + Delta-G solvation = -4100.339475 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.04735 -40.64029 -39.71779 -38.30510 -37.03933 -35.77738 -34.61169 -32.89070 -31.77276 -31.38201 -30.81368 -29.65172 -29.18162 -26.25094 -25.51856 -24.88035 -23.55831 -22.82230 -22.05678 -21.49584 -20.17072 -19.11752 -18.58366 -18.19573 -17.74699 -17.47808 -16.97390 -16.87940 -16.55871 -16.24422 -16.12354 -15.64932 -15.40384 -15.13183 -14.96022 -14.85846 -14.50249 -14.40033 -14.28132 -14.21925 -13.81533 -13.63181 -13.41612 -13.29579 -13.14174 -13.06037 -12.96265 -12.79322 -12.65294 -12.58729 -12.40575 -12.33058 -12.20559 -11.97202 -11.86207 -11.66898 -11.02102 -10.91957 -10.78924 -10.22702 -10.12866 -9.77114 -9.38258 -8.74059 -8.29883 -6.37278 0.40499 0.57275 1.37580 1.41684 1.49161 1.61354 1.64836 1.82005 2.23838 2.32463 2.96594 3.01605 3.05287 3.37180 3.75660 3.93143 3.97561 4.04428 4.08946 4.15758 4.20982 4.33969 4.38421 4.46076 4.48539 4.51313 4.55779 4.62544 4.65275 4.68968 4.72475 4.78455 4.82096 4.84490 4.88584 4.94531 5.02365 5.13251 5.24310 5.34077 5.37287 5.42150 5.45964 5.59914 5.69202 5.75537 5.82230 5.98900 6.12595 6.30063 6.48899 6.57164 6.66298 7.11317 7.26214 7.26862 8.85525 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009749 B = 0.003217 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.530371 B = 8702.792352 C =10991.725149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.502 3.498 3 O -0.605 6.605 4 N -0.717 5.717 5 C 0.130 3.870 6 C 0.047 3.953 7 N -0.531 5.531 8 C 0.018 3.982 9 C 0.084 3.916 10 H 0.075 0.925 11 C -0.145 4.145 12 C 0.519 3.481 13 O -0.537 6.537 14 N -0.538 5.538 15 C 0.207 3.793 16 C -0.529 4.529 17 H 0.031 0.969 18 C 0.032 3.968 19 N -0.933 5.933 20 Si 0.929 3.071 21 H -0.254 1.254 22 H -0.286 1.286 23 H -0.245 1.245 24 C 0.138 3.862 25 C -0.191 4.191 26 C -0.106 4.106 27 C -0.150 4.150 28 C -0.102 4.102 29 C -0.166 4.166 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.419 0.581 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.082 0.918 40 H 0.037 0.963 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.057 0.943 46 H 0.270 0.730 47 H 0.160 0.840 48 H 0.143 0.857 49 H 0.151 0.849 50 H 0.146 0.854 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.845 8.130 9.490 14.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.291 3.709 3 O -0.487 6.487 4 N -0.371 5.371 5 C 0.005 3.995 6 C -0.080 4.080 7 N -0.257 5.257 8 C -0.130 4.130 9 C -0.027 4.027 10 H 0.093 0.907 11 C -0.203 4.203 12 C 0.309 3.691 13 O -0.416 6.416 14 N -0.258 5.258 15 C 0.086 3.914 16 C -0.567 4.567 17 H 0.050 0.950 18 C -0.169 4.169 19 N -0.572 5.572 20 Si 0.752 3.248 21 H -0.178 1.178 22 H -0.212 1.212 23 H -0.168 1.168 24 C 0.044 3.956 25 C -0.211 4.211 26 C -0.124 4.124 27 C -0.169 4.169 28 C -0.120 4.120 29 C -0.186 4.186 30 H 0.132 0.868 31 H 0.105 0.895 32 H 0.130 0.870 33 H 0.256 0.744 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.176 0.824 48 H 0.161 0.839 49 H 0.168 0.832 50 H 0.164 0.836 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.129 9.515 8.870 14.834 hybrid contribution -0.474 -1.688 0.587 1.849 sum -7.603 7.827 9.457 14.440 Atomic orbital electron populations 1.21922 0.87713 1.06058 1.06592 1.21685 0.92461 0.82618 0.74147 1.90717 1.72386 1.33459 1.52118 1.45888 1.06734 1.09620 1.74858 1.21058 0.80145 0.96530 1.01756 1.22326 0.86284 0.96041 1.03390 1.61577 1.07815 1.20036 1.36225 1.22531 1.00813 1.00669 0.88954 1.21468 0.89736 0.90694 1.00801 0.90736 1.21919 1.02736 1.02020 0.93610 1.20924 0.90792 0.81986 0.75371 1.90326 1.70580 1.32685 1.48052 1.45723 1.05103 1.11257 1.63749 1.19938 0.93547 0.80810 0.97089 1.21123 1.38187 1.03586 0.93795 0.95030 1.25611 0.95527 0.96589 0.99139 1.70035 1.44094 1.15082 1.27945 0.85988 0.80487 0.78048 0.80300 1.17780 1.21202 1.16796 1.18359 0.82850 0.95199 0.99231 1.22494 0.96412 0.98335 1.03865 1.21384 0.92938 0.99682 0.98422 1.21420 1.01064 0.91961 1.02424 1.21235 0.92858 0.99255 0.98681 1.21127 0.95372 0.96882 1.05241 0.86829 0.89452 0.86996 0.74396 0.92273 0.92676 0.88479 0.92085 0.92487 0.89914 0.94425 0.90782 0.89299 0.92765 0.93457 0.92546 0.92109 0.82378 0.83893 0.83158 0.83647 0.86140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 10.32 71.24 0.74 -0.76 16 2 C 0.50 9.89 7.94 87.66 0.70 10.58 16 3 O -0.61 -18.87 17.09 -3.02 -0.05 -18.93 16 4 N -0.72 -11.55 5.56 -463.05 -2.57 -14.12 16 5 C 0.13 2.80 5.60 86.38 0.48 3.28 16 6 C 0.05 0.98 4.89 86.30 0.42 1.40 16 7 N -0.53 -15.07 4.38 -901.47 -3.95 -19.01 16 8 C 0.02 0.49 8.92 127.69 1.14 1.62 16 9 C 0.08 2.76 1.75 44.17 0.08 2.84 16 10 H 0.08 2.30 6.17 -2.39 -0.01 2.28 16 11 C -0.15 -4.94 8.71 71.98 0.63 -4.32 16 12 C 0.52 20.61 5.72 87.66 0.50 21.11 16 13 O -0.54 -23.04 11.62 -3.04 -0.04 -23.08 16 14 N -0.54 -22.30 2.68 -635.32 -1.70 -24.01 16 15 C 0.21 8.60 3.35 85.63 0.29 8.89 16 16 C -0.53 -26.48 7.54 25.60 0.19 -26.28 16 17 H 0.03 1.88 7.92 -2.91 -0.02 1.86 16 18 C 0.03 1.60 5.47 84.65 0.46 2.06 16 19 N -0.93 -52.23 13.96 21.45 0.30 -51.93 16 20 Si 0.93 36.90 27.47 68.60 1.88 38.79 16 21 H -0.25 -9.31 7.11 99.48 0.71 -8.61 16 22 H -0.29 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.24 -8.88 6.54 99.48 0.65 -8.23 16 24 C 0.14 5.66 6.49 38.15 0.25 5.91 16 25 C -0.19 -7.28 8.99 22.39 0.20 -7.08 16 26 C -0.11 -3.26 10.04 22.25 0.22 -3.03 16 27 C -0.15 -4.16 10.04 22.29 0.22 -3.94 16 28 C -0.10 -3.14 10.04 22.25 0.22 -2.92 16 29 C -0.17 -6.31 9.15 22.39 0.20 -6.11 16 30 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.09 0.92 8.12 -2.39 -0.02 0.91 16 32 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.42 3.72 8.47 -92.71 -0.79 2.93 16 34 H 0.06 1.39 6.58 -2.39 -0.02 1.38 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.10 1.87 5.99 -2.39 -0.01 1.86 16 37 H 0.06 1.05 8.12 -2.39 -0.02 1.03 16 38 H 0.06 1.82 5.86 -2.39 -0.01 1.81 16 39 H 0.08 2.01 6.53 -2.38 -0.02 2.00 16 40 H 0.04 0.88 8.13 -2.39 -0.02 0.86 16 41 H 0.07 3.12 5.34 -2.39 -0.01 3.11 16 42 H 0.09 2.41 6.60 -2.38 -0.02 2.39 16 43 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.05 1.93 5.59 -2.39 -0.01 1.92 16 45 H 0.06 2.12 5.22 -2.39 -0.01 2.11 16 46 H 0.27 14.13 8.31 -92.70 -0.77 13.36 16 47 H 0.16 6.46 4.68 -49.15 -0.23 6.23 16 48 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 49 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 50 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 51 H 0.12 4.84 6.27 -2.91 -0.02 4.83 16 Total: -1.00 -72.29 399.09 0.72 -71.57 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: -0.10 Total: 37.47 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 6.95 Total: 3.25 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -7.92 Total: -109.08 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -0.09 Total: -42.00 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 1.88 Total: 38.79 kcal Total: -72.29 0.72 -71.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575294695.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.144 kcal (2) G-P(sol) polarization free energy of solvation -72.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds