Wall clock time and date at job start Wed Apr 1 2020 05:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47044 * 2 1 4 4 C 1.50693 * 109.47244 * 119.99959 * 2 1 3 5 5 O 1.21285 * 120.00358 * 119.99606 * 4 2 1 6 6 N 1.34783 * 120.00123 * 300.00312 * 4 2 1 7 7 C 1.46499 * 119.99849 * 359.97438 * 6 4 2 8 8 C 1.46495 * 120.00063 * 180.02562 * 6 4 2 9 9 C 1.50700 * 109.47543 * 89.99561 * 8 6 4 10 10 H 1.08002 * 119.99793 * 0.02562 * 9 8 6 11 11 C 1.37871 * 120.00036 * 180.02562 * 9 8 6 12 12 N 1.31509 * 120.00507 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99891 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47493 * 59.99636 * 13 11 9 15 15 H 1.48500 * 109.47165 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46759 * 299.99574 * 13 11 9 17 17 N 1.46906 * 109.46965 * 239.99978 * 2 1 3 18 18 C 1.46893 * 111.00136 * 306.04405 * 17 2 1 19 19 C 1.46901 * 110.99853 * 70.00100 * 17 2 1 20 20 C 1.50701 * 109.46921 * 169.99766 * 19 17 2 21 21 O 1.21280 * 119.99781 * 0.02562 * 20 19 17 22 22 N 1.34780 * 119.99795 * 179.97438 * 20 19 17 23 23 C 1.46497 * 119.99566 * 180.02562 * 22 20 19 24 24 C 1.50703 * 109.46835 * 180.02562 * 23 22 20 25 25 C 1.38231 * 120.00143 * 269.72598 * 24 23 22 26 26 C 1.38232 * 120.00354 * 179.76499 * 25 24 23 27 27 C 1.38237 * 119.99634 * 0.50993 * 26 25 24 28 28 C 1.38237 * 120.00240 * 359.74804 * 27 26 25 29 29 C 1.38236 * 119.99634 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47141 * 59.99979 * 1 2 3 31 31 H 1.09000 * 109.47044 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46733 * 300.00046 * 1 2 3 33 33 H 1.08998 * 109.47056 * 89.99887 * 7 6 4 34 34 H 1.08995 * 109.47131 * 210.00427 * 7 6 4 35 35 H 1.09007 * 109.46890 * 330.00300 * 7 6 4 36 36 H 1.08996 * 109.47186 * 209.99468 * 8 6 4 37 37 H 1.09001 * 109.47024 * 329.99711 * 8 6 4 38 38 H 0.96998 * 120.00706 * 180.02562 * 12 11 9 39 39 H 1.08999 * 109.47439 * 183.95618 * 18 17 2 40 40 H 1.08997 * 109.47257 * 303.95746 * 18 17 2 41 41 H 1.09006 * 109.46808 * 63.95302 * 18 17 2 42 42 H 1.09002 * 109.47401 * 49.99794 * 19 17 2 43 43 H 1.09001 * 109.46874 * 289.99807 * 19 17 2 44 44 H 0.96995 * 120.00011 * 0.02562 * 22 20 19 45 45 H 1.09001 * 109.47487 * 300.00114 * 23 22 20 46 46 H 1.09002 * 109.47182 * 60.00342 * 23 22 20 47 47 H 1.08003 * 120.00132 * 0.02562 * 25 24 23 48 48 H 1.07995 * 120.00414 * 180.23089 * 26 25 24 49 49 H 1.08002 * 120.00281 * 179.72006 * 27 26 25 50 50 H 1.07996 * 120.00689 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.00326 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 0.8649 0.9415 2.5890 8 6 2.1956 -0.9402 3.6507 9 6 3.5230 -0.3562 4.0606 10 1 3.9587 0.4490 3.4877 11 6 4.1811 -0.8497 5.1670 12 7 3.6508 -1.8305 5.8644 13 14 5.8262 -0.1253 5.6755 14 1 5.6601 1.3202 5.9721 15 1 6.3223 -0.8259 6.8872 16 1 6.8042 -0.2948 4.5710 17 7 2.0197 -0.6925 -1.1995 18 6 1.4344 -2.0355 -1.3078 19 6 1.7529 0.0972 -2.4091 20 6 2.4775 -0.5163 -3.5795 21 8 3.1494 -1.5135 -3.4215 22 7 2.3778 0.0427 -4.8018 23 6 3.0817 -0.5541 -5.9396 24 6 2.8081 0.2562 -7.1805 25 6 1.7299 -0.0571 -7.9868 26 6 1.4761 0.6891 -9.1224 27 6 2.3068 1.7421 -9.4574 28 6 3.3882 2.0521 -8.6540 29 6 3.6386 1.3094 -7.5153 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.1831 0.6439 2.6221 34 1 1.1228 1.4667 3.5086 35 1 1.0288 1.6002 1.7361 36 1 1.4778 -0.8150 4.4613 37 1 2.3171 -2.0014 3.4336 38 1 4.1136 -2.1775 6.6430 39 1 1.8665 -2.5521 -2.1648 40 1 1.6467 -2.5987 -0.3992 41 1 0.3556 -1.9520 -1.4399 42 1 2.1025 1.1189 -2.2604 43 1 0.6814 0.1053 -2.6087 44 1 1.8401 0.8400 -4.9281 45 1 4.1533 -0.5622 -5.7403 46 1 2.7319 -1.5758 -6.0880 47 1 1.0832 -0.8822 -7.7273 48 1 0.6316 0.4467 -9.7503 49 1 2.1112 2.3223 -10.3471 50 1 4.0374 2.8744 -8.9159 51 1 4.4836 1.5512 -6.8878 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582873381.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:34 Heat of formation + Delta-G solvation = -16.676974 kcal Electronic energy + Delta-G solvation = -30060.072057 eV Core-core repulsion = 25960.502109 eV Total energy + Delta-G solvation = -4099.569948 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.33100 -39.71648 -39.03833 -36.61220 -35.08796 -34.77642 -32.67425 -31.92291 -31.36735 -30.76278 -28.40911 -27.50715 -26.38884 -26.07094 -25.01759 -23.32083 -23.04087 -21.82136 -21.28890 -20.32190 -18.38515 -17.63461 -16.97296 -16.71665 -16.36413 -16.03470 -15.95046 -15.55432 -15.38216 -15.21036 -14.87482 -14.51901 -14.16101 -13.98904 -13.87202 -13.80988 -13.48709 -13.32841 -13.03902 -12.92896 -12.85087 -12.67178 -12.28636 -12.12546 -11.95289 -11.54037 -11.51316 -11.36331 -11.30407 -11.21687 -11.10178 -11.01350 -10.83404 -10.50695 -10.09861 -9.95151 -9.57070 -9.40378 -9.27095 -9.25731 -8.70703 -8.37715 -8.05555 -7.55221 -5.98636 -4.03070 0.77268 0.92982 2.59994 2.85490 3.36215 3.40046 3.40839 3.43981 3.52687 3.81926 4.21715 4.28805 4.39898 4.50912 4.54768 4.64982 4.70540 4.91946 4.97652 5.02271 5.05609 5.11678 5.20948 5.26642 5.28951 5.35449 5.36179 5.52846 5.55341 5.58497 5.64140 5.71530 5.76359 5.90964 5.95255 5.97324 6.04491 6.10017 6.13278 6.18463 6.27790 6.50761 6.57749 6.96144 7.11043 7.19883 7.36993 7.50600 7.61460 7.98131 8.17894 8.29483 8.49071 8.97020 9.20808 9.61979 11.09315 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018568 B = 0.001845 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.639012 B =15171.281394 C =15748.064077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.064 3.936 3 H 0.101 0.899 4 C 0.511 3.489 5 O -0.517 6.517 6 N -0.604 5.604 7 C 0.083 3.917 8 C 0.247 3.753 9 C -0.525 4.525 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.276 1.276 17 N -0.498 5.498 18 C 0.014 3.986 19 C 0.037 3.963 20 C 0.513 3.487 21 O -0.509 6.509 22 N -0.734 5.734 23 C 0.162 3.838 24 C -0.107 4.107 25 C -0.101 4.101 26 C -0.123 4.123 27 C -0.114 4.114 28 C -0.122 4.122 29 C -0.100 4.100 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.031 0.969 37 H 0.043 0.957 38 H 0.263 0.737 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.016 0.984 42 H 0.102 0.898 43 H 0.063 0.937 44 H 0.399 0.601 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.124 0.876 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.124 0.876 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.043 10.481 -28.948 32.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.048 4.048 3 H 0.119 0.881 4 C 0.296 3.704 5 O -0.392 6.392 6 N -0.337 5.337 7 C -0.061 4.061 8 C 0.128 3.872 9 C -0.564 4.564 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.221 5.221 18 C -0.133 4.133 19 C -0.095 4.095 20 C 0.299 3.701 21 O -0.382 6.382 22 N -0.389 5.389 23 C 0.039 3.961 24 C -0.107 4.107 25 C -0.120 4.120 26 C -0.141 4.141 27 C -0.133 4.133 28 C -0.140 4.140 29 C -0.119 4.119 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.034 0.966 42 H 0.120 0.880 43 H 0.080 0.920 44 H 0.233 0.767 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.142 0.858 48 H 0.141 0.859 49 H 0.140 0.860 50 H 0.142 0.858 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.601 8.988 -28.628 31.214 hybrid contribution -0.234 1.111 0.120 1.142 sum -8.835 10.099 -28.508 31.508 Atomic orbital electron populations 1.22678 0.95974 1.03441 1.03339 1.21702 0.93769 0.98783 0.90545 0.88118 1.19966 0.81255 0.85316 0.83829 1.90665 1.36629 1.26224 1.85685 1.48113 1.50056 1.28337 1.07219 1.21762 0.93709 0.88272 1.02396 1.19257 0.94112 0.93723 0.80079 1.21406 1.04891 1.19007 1.11096 0.92522 1.24928 0.97891 0.94974 0.96313 1.69917 1.39079 1.26064 1.18411 0.86565 0.84057 0.78945 0.77890 1.20318 1.21228 1.20131 1.61517 1.58952 1.02612 0.98997 1.22728 0.95029 0.89964 1.05628 1.21978 0.98576 0.98790 0.90140 1.20637 0.81676 0.84483 0.83349 1.90734 1.39084 1.24598 1.83813 1.46047 1.52853 1.32095 1.07866 1.20143 0.97911 0.95915 0.82130 1.19927 0.96515 0.97342 0.96913 1.21138 0.96715 0.99532 0.94590 1.21187 0.99775 0.95902 0.97219 1.21242 0.95069 0.97387 0.99571 1.21200 0.97852 0.99908 0.95052 1.21167 0.99148 0.94649 0.96928 0.92284 0.91598 0.89994 0.93611 0.90883 0.92494 0.95094 0.93865 0.92726 0.90047 0.88994 0.96595 0.87990 0.91968 0.76704 0.90542 0.90672 0.85804 0.85874 0.85987 0.85826 0.85687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.29 8.08 37.16 0.30 -1.99 16 2 C 0.06 0.98 1.93 -68.86 -0.13 0.85 16 3 H 0.10 1.37 7.19 -51.93 -0.37 1.00 16 4 C 0.51 10.90 6.77 -10.99 -0.07 10.83 16 5 O -0.52 -13.56 13.91 5.55 0.08 -13.49 16 6 N -0.60 -12.87 2.86 -182.96 -0.52 -13.39 16 7 C 0.08 1.28 8.80 59.85 0.53 1.80 16 8 C 0.25 6.57 5.16 -5.20 -0.03 6.55 16 9 C -0.53 -15.20 9.39 -34.44 -0.32 -15.53 16 10 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 12 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 13 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 N -0.50 -7.93 4.19 -237.73 -1.00 -8.93 16 18 C 0.01 0.23 8.16 60.06 0.49 0.72 16 19 C 0.04 0.41 5.02 -4.97 -0.02 0.38 16 20 C 0.51 6.35 7.56 -10.98 -0.08 6.27 16 21 O -0.51 -8.76 14.31 5.56 0.08 -8.68 16 22 N -0.73 -6.30 5.55 -61.47 -0.34 -6.64 16 23 C 0.16 1.37 5.80 -5.19 -0.03 1.34 16 24 C -0.11 -0.75 5.25 -104.62 -0.55 -1.30 16 25 C -0.10 -0.65 9.70 -39.59 -0.38 -1.03 16 26 C -0.12 -0.70 10.05 -39.58 -0.40 -1.10 16 27 C -0.11 -0.64 10.05 -39.58 -0.40 -1.03 16 28 C -0.12 -0.72 10.05 -39.58 -0.40 -1.12 16 29 C -0.10 -0.67 9.70 -39.58 -0.38 -1.05 16 30 H 0.06 0.53 6.91 -51.93 -0.36 0.17 16 31 H 0.07 0.85 6.42 -51.93 -0.33 0.52 16 32 H 0.08 0.89 4.53 -51.93 -0.24 0.66 16 33 H 0.05 0.60 6.95 -51.93 -0.36 0.24 16 34 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 35 H 0.06 0.71 6.01 -51.93 -0.31 0.40 16 36 H 0.03 0.82 8.07 -51.93 -0.42 0.41 16 37 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.08 1.40 5.88 -51.93 -0.31 1.09 16 40 H 0.09 1.82 5.82 -51.93 -0.30 1.52 16 41 H 0.02 0.22 6.46 -51.93 -0.34 -0.12 16 42 H 0.10 0.92 7.93 -51.93 -0.41 0.51 16 43 H 0.06 0.54 7.06 -51.93 -0.37 0.17 16 44 H 0.40 2.39 8.46 -40.82 -0.35 2.05 16 45 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 46 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 47 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 48 H 0.12 0.48 8.06 -52.49 -0.42 0.06 16 49 H 0.12 0.45 8.06 -52.49 -0.42 0.02 16 50 H 0.12 0.52 8.06 -52.49 -0.42 0.09 16 51 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 407.63 15.07 6.14 6.14 Total: -1.00 -37.53 407.63 -9.59 -47.12 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.76 Total: 0.57 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -1.99 Total: 6.26 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -1.12 Total: -55.29 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: 0.16 Total: -22.17 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.53 -9.59 -47.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582873381.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.443 kcal (2) G-P(sol) polarization free energy of solvation -37.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds