Wall clock time and date at job start Wed Apr 1 2020 05:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47044 * 2 1 4 4 C 1.50693 * 109.47244 * 119.99959 * 2 1 3 5 5 O 1.21285 * 120.00358 * 119.99606 * 4 2 1 6 6 N 1.34783 * 120.00123 * 300.00312 * 4 2 1 7 7 C 1.46499 * 119.99849 * 359.97438 * 6 4 2 8 8 C 1.46495 * 120.00063 * 180.02562 * 6 4 2 9 9 C 1.50700 * 109.47543 * 89.99561 * 8 6 4 10 10 H 1.08002 * 119.99793 * 0.02562 * 9 8 6 11 11 C 1.37871 * 120.00036 * 180.02562 * 9 8 6 12 12 N 1.31509 * 120.00507 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99891 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47493 * 59.99636 * 13 11 9 15 15 H 1.48500 * 109.47165 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46759 * 299.99574 * 13 11 9 17 17 N 1.46906 * 109.46965 * 239.99978 * 2 1 3 18 18 C 1.46893 * 111.00136 * 306.04405 * 17 2 1 19 19 C 1.46901 * 110.99853 * 70.00100 * 17 2 1 20 20 C 1.50701 * 109.46921 * 169.99766 * 19 17 2 21 21 O 1.21280 * 119.99781 * 0.02562 * 20 19 17 22 22 N 1.34780 * 119.99795 * 179.97438 * 20 19 17 23 23 C 1.46497 * 119.99566 * 180.02562 * 22 20 19 24 24 C 1.50703 * 109.46835 * 180.02562 * 23 22 20 25 25 C 1.38231 * 120.00143 * 269.72598 * 24 23 22 26 26 C 1.38232 * 120.00354 * 179.76499 * 25 24 23 27 27 C 1.38237 * 119.99634 * 0.50993 * 26 25 24 28 28 C 1.38237 * 120.00240 * 359.74804 * 27 26 25 29 29 C 1.38236 * 119.99634 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47141 * 59.99979 * 1 2 3 31 31 H 1.09000 * 109.47044 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46733 * 300.00046 * 1 2 3 33 33 H 1.08998 * 109.47056 * 89.99887 * 7 6 4 34 34 H 1.08995 * 109.47131 * 210.00427 * 7 6 4 35 35 H 1.09007 * 109.46890 * 330.00300 * 7 6 4 36 36 H 1.08996 * 109.47186 * 209.99468 * 8 6 4 37 37 H 1.09001 * 109.47024 * 329.99711 * 8 6 4 38 38 H 0.96998 * 120.00706 * 180.02562 * 12 11 9 39 39 H 1.08999 * 109.47439 * 183.95618 * 18 17 2 40 40 H 1.08997 * 109.47257 * 303.95746 * 18 17 2 41 41 H 1.09006 * 109.46808 * 63.95302 * 18 17 2 42 42 H 1.09002 * 109.47401 * 49.99794 * 19 17 2 43 43 H 1.09001 * 109.46874 * 289.99807 * 19 17 2 44 44 H 0.96995 * 120.00011 * 0.02562 * 22 20 19 45 45 H 1.09001 * 109.47487 * 300.00114 * 23 22 20 46 46 H 1.09002 * 109.47182 * 60.00342 * 23 22 20 47 47 H 1.08003 * 120.00132 * 0.02562 * 25 24 23 48 48 H 1.07995 * 120.00414 * 180.23089 * 26 25 24 49 49 H 1.08002 * 120.00281 * 179.72006 * 27 26 25 50 50 H 1.07996 * 120.00689 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.00326 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 0.8649 0.9415 2.5890 8 6 2.1956 -0.9402 3.6507 9 6 3.5230 -0.3562 4.0606 10 1 3.9587 0.4490 3.4877 11 6 4.1811 -0.8497 5.1670 12 7 3.6508 -1.8305 5.8644 13 14 5.8262 -0.1253 5.6755 14 1 5.6601 1.3202 5.9721 15 1 6.3223 -0.8259 6.8872 16 1 6.8042 -0.2948 4.5710 17 7 2.0197 -0.6925 -1.1995 18 6 1.4344 -2.0355 -1.3078 19 6 1.7529 0.0972 -2.4091 20 6 2.4775 -0.5163 -3.5795 21 8 3.1494 -1.5135 -3.4215 22 7 2.3778 0.0427 -4.8018 23 6 3.0817 -0.5541 -5.9396 24 6 2.8081 0.2562 -7.1805 25 6 1.7299 -0.0571 -7.9868 26 6 1.4761 0.6891 -9.1224 27 6 2.3068 1.7421 -9.4574 28 6 3.3882 2.0521 -8.6540 29 6 3.6386 1.3094 -7.5153 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.1831 0.6439 2.6221 34 1 1.1228 1.4667 3.5086 35 1 1.0288 1.6002 1.7361 36 1 1.4778 -0.8150 4.4613 37 1 2.3171 -2.0014 3.4336 38 1 4.1136 -2.1775 6.6430 39 1 1.8665 -2.5521 -2.1648 40 1 1.6467 -2.5987 -0.3992 41 1 0.3556 -1.9520 -1.4399 42 1 2.1025 1.1189 -2.2604 43 1 0.6814 0.1053 -2.6087 44 1 1.8401 0.8400 -4.9281 45 1 4.1533 -0.5622 -5.7403 46 1 2.7319 -1.5758 -6.0880 47 1 1.0832 -0.8822 -7.7273 48 1 0.6316 0.4467 -9.7503 49 1 2.1112 2.3223 -10.3471 50 1 4.0374 2.8744 -8.9159 51 1 4.4836 1.5512 -6.8878 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582873381.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:33 Heat of formation + Delta-G solvation = -44.563163 kcal Electronic energy + Delta-G solvation = -30061.281293 eV Core-core repulsion = 25960.502109 eV Total energy + Delta-G solvation = -4100.779184 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.41123 -40.70953 -39.92964 -37.88421 -36.54145 -35.92258 -34.77813 -32.64579 -31.95322 -31.79698 -29.58142 -29.16456 -27.65782 -27.07662 -26.19108 -25.11265 -23.47565 -22.85386 -22.16323 -21.30478 -19.85909 -18.69955 -18.43896 -17.94905 -17.63338 -17.06667 -16.82468 -16.78176 -16.39210 -16.32132 -16.05725 -15.76451 -15.51063 -15.11457 -15.08308 -14.46676 -14.33624 -14.29686 -14.25746 -13.97986 -13.86271 -13.69936 -13.47676 -13.44367 -13.28144 -13.14735 -12.88543 -12.62260 -12.51559 -12.43380 -12.34628 -12.19194 -12.08700 -11.99729 -11.91483 -11.68797 -10.96873 -10.63462 -10.34983 -10.11448 -9.83134 -9.75619 -9.37762 -9.12493 -8.21084 -6.35889 0.29981 0.49019 1.35434 1.41015 1.47687 1.67755 1.92233 2.01928 2.35035 2.47696 2.91300 3.07917 3.12235 3.66281 3.69198 3.86061 3.92586 4.07777 4.13656 4.15579 4.26082 4.30378 4.36541 4.38896 4.44608 4.51132 4.59836 4.61262 4.68602 4.70578 4.77643 4.78617 4.86093 4.99246 5.04114 5.06245 5.15784 5.19237 5.25309 5.26789 5.43309 5.54827 5.58622 5.62351 5.65036 5.86369 5.98335 6.02257 6.08170 6.08561 6.61146 6.72421 6.86691 7.30566 7.32739 7.59401 8.85352 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018568 B = 0.001845 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.639012 B =15171.281394 C =15748.064077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.079 3.921 3 H 0.130 0.870 4 C 0.497 3.503 5 O -0.582 6.582 6 N -0.610 5.610 7 C 0.076 3.924 8 C 0.262 3.738 9 C -0.542 4.542 10 H 0.052 0.948 11 C 0.006 3.994 12 N -0.928 5.928 13 Si 0.967 3.033 14 H -0.257 1.257 15 H -0.278 1.278 16 H -0.282 1.282 17 N -0.533 5.533 18 C 0.028 3.972 19 C 0.040 3.960 20 C 0.509 3.491 21 O -0.569 6.569 22 N -0.713 5.713 23 C 0.165 3.835 24 C -0.113 4.113 25 C -0.109 4.109 26 C -0.127 4.127 27 C -0.117 4.117 28 C -0.128 4.128 29 C -0.111 4.111 30 H 0.101 0.899 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.025 0.975 37 H -0.008 1.008 38 H 0.266 0.734 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.133 0.867 43 H 0.101 0.899 44 H 0.416 0.584 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.130 0.870 48 H 0.141 0.859 49 H 0.143 0.857 50 H 0.140 0.860 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.593 14.319 -31.061 36.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.033 4.033 3 H 0.147 0.853 4 C 0.285 3.715 5 O -0.462 6.462 6 N -0.342 5.342 7 C -0.066 4.066 8 C 0.140 3.860 9 C -0.581 4.581 10 H 0.071 0.929 11 C -0.193 4.193 12 N -0.568 5.568 13 Si 0.791 3.209 14 H -0.181 1.181 15 H -0.203 1.203 16 H -0.207 1.207 17 N -0.257 5.257 18 C -0.119 4.119 19 C -0.091 4.091 20 C 0.296 3.704 21 O -0.447 6.447 22 N -0.367 5.367 23 C 0.042 3.958 24 C -0.113 4.113 25 C -0.127 4.127 26 C -0.145 4.145 27 C -0.135 4.135 28 C -0.146 4.146 29 C -0.129 4.129 30 H 0.120 0.880 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.043 0.957 37 H 0.011 0.989 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.150 0.850 43 H 0.118 0.882 44 H 0.252 0.748 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.148 0.852 48 H 0.159 0.841 49 H 0.160 0.840 50 H 0.157 0.843 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.220 12.923 -30.779 34.911 hybrid contribution 0.221 -0.090 0.682 0.723 sum -9.999 12.833 -30.096 34.212 Atomic orbital electron populations 1.22651 0.92577 1.03289 1.06053 1.21627 0.96148 0.98450 0.87048 0.85261 1.21252 0.80107 0.84759 0.85416 1.90638 1.39576 1.29214 1.86761 1.48123 1.50554 1.29708 1.05857 1.22120 0.94156 0.86480 1.03841 1.18694 0.93658 0.91556 0.82099 1.21694 1.06018 1.19059 1.11291 0.92939 1.25867 1.01789 0.95304 0.96333 1.70042 1.40737 1.27192 1.18855 0.85485 0.78832 0.79247 0.77334 1.18104 1.20295 1.20748 1.61296 1.60464 1.02892 1.01031 1.22425 0.96628 0.90398 1.02495 1.22116 1.00665 0.98943 0.87332 1.21020 0.80987 0.83776 0.84574 1.90726 1.41843 1.27314 1.84784 1.45875 1.51996 1.31981 1.06828 1.20058 0.96962 0.95933 0.82845 1.19774 0.97367 0.97673 0.96521 1.21271 0.96641 0.99911 0.94886 1.21454 1.00346 0.95672 0.97042 1.21558 0.94603 0.97319 1.00049 1.21445 0.98270 1.00192 0.94687 1.21275 0.99253 0.94842 0.97559 0.88003 0.93219 0.88752 0.90645 0.91743 0.88448 0.95737 0.98940 0.92470 0.91549 0.93545 0.93685 0.84959 0.88157 0.74756 0.92045 0.91612 0.85240 0.84069 0.83966 0.84252 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.60 8.08 71.98 0.58 -3.02 16 2 C 0.08 2.22 1.93 44.17 0.09 2.31 16 3 H 0.13 2.93 7.19 -2.39 -0.02 2.91 16 4 C 0.50 21.53 6.77 87.65 0.59 22.12 16 5 O -0.58 -32.59 13.91 -3.04 -0.04 -32.63 16 6 N -0.61 -26.22 2.86 -851.15 -2.43 -28.65 16 7 C 0.08 2.15 8.80 127.77 1.12 3.28 16 8 C 0.26 14.57 5.16 85.63 0.44 15.01 16 9 C -0.54 -32.30 9.39 25.60 0.24 -32.06 16 10 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 11 C 0.01 0.35 5.46 84.65 0.46 0.81 16 12 N -0.93 -57.80 13.29 21.44 0.28 -57.51 16 13 Si 0.97 46.43 29.54 68.60 2.03 48.46 16 14 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 15 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 16 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 17 N -0.53 -16.36 4.19 -906.04 -3.79 -20.15 16 18 C 0.03 0.95 8.16 127.69 1.04 1.99 16 19 C 0.04 0.75 5.02 85.56 0.43 1.18 16 20 C 0.51 12.06 7.56 87.66 0.66 12.72 16 21 O -0.57 -20.24 14.31 -3.03 -0.04 -20.28 16 22 N -0.71 -11.12 5.55 -466.78 -2.59 -13.71 16 23 C 0.17 2.78 5.80 85.63 0.50 3.28 16 24 C -0.11 -1.47 5.25 -19.87 -0.10 -1.58 16 25 C -0.11 -1.22 9.70 22.27 0.22 -1.00 16 26 C -0.13 -1.16 10.05 22.27 0.22 -0.94 16 27 C -0.12 -1.01 10.05 22.27 0.22 -0.78 16 28 C -0.13 -1.25 10.05 22.27 0.22 -1.02 16 29 C -0.11 -1.33 9.70 22.27 0.22 -1.12 16 30 H 0.10 1.15 6.91 -2.39 -0.02 1.14 16 31 H 0.05 1.14 6.42 -2.39 -0.02 1.13 16 32 H 0.09 1.59 4.53 -2.39 -0.01 1.58 16 33 H 0.08 1.72 6.95 -2.39 -0.02 1.70 16 34 H 0.06 1.96 8.07 -2.39 -0.02 1.94 16 35 H 0.10 1.98 6.01 -2.38 -0.01 1.96 16 36 H 0.02 1.37 8.07 -2.39 -0.02 1.35 16 37 H -0.01 -0.49 7.42 -2.39 -0.02 -0.51 16 38 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 39 H 0.07 2.40 5.88 -2.39 -0.01 2.39 16 40 H 0.05 1.97 5.82 -2.39 -0.01 1.96 16 41 H 0.04 1.19 6.46 -2.38 -0.02 1.17 16 42 H 0.13 1.73 7.93 -2.39 -0.02 1.71 16 43 H 0.10 1.18 7.06 -2.39 -0.02 1.17 16 44 H 0.42 3.78 8.46 -92.71 -0.78 2.99 16 45 H 0.06 1.22 8.09 -2.39 -0.02 1.20 16 46 H 0.07 1.23 8.08 -2.39 -0.02 1.22 16 47 H 0.13 1.24 8.06 -2.91 -0.02 1.21 16 48 H 0.14 0.72 8.06 -2.91 -0.02 0.70 16 49 H 0.14 0.60 8.06 -2.91 -0.02 0.57 16 50 H 0.14 0.84 8.06 -2.91 -0.02 0.82 16 51 H 0.13 1.41 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -90.33 407.63 0.73 -89.60 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.16 Total: 13.70 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: 7.16 Total: 21.18 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -8.53 Total: -120.03 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -0.09 Total: -52.91 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -90.33 0.73 -89.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582873381.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.035 kcal (2) G-P(sol) polarization free energy of solvation -90.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds