Wall clock time and date at job start Wed Apr 1 2020 04:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47346 * 2 1 4 4 C 1.53002 * 109.46692 * 119.99564 * 2 1 3 5 5 N 1.46506 * 109.47083 * 175.00117 * 4 2 1 6 6 C 1.34769 * 120.00193 * 179.97438 * 5 4 2 7 7 O 1.21590 * 120.00286 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99960 * 179.97438 * 6 5 4 9 9 C 1.47025 * 125.64766 * 0.02605 * 8 6 5 10 10 C 1.54329 * 107.27061 * 181.02178 * 9 8 6 11 11 C 1.55155 * 102.94288 * 22.19467 * 10 9 8 12 12 O 1.42897 * 111.00276 * 82.57104 * 11 10 9 13 13 C 1.50697 * 111.00611 * 206.38422 * 11 10 9 14 14 H 1.08004 * 120.00174 * 0.02562 * 13 11 10 15 15 C 1.37886 * 120.00107 * 179.97438 * 13 11 10 16 16 N 1.31508 * 119.99558 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 119.99893 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47297 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47405 * 120.00188 * 17 15 13 20 20 H 1.48503 * 109.47136 * 240.00151 * 17 15 13 21 21 C 1.47425 * 125.64936 * 179.71865 * 8 6 5 22 22 N 1.46493 * 109.47222 * 239.99440 * 2 1 3 23 23 C 1.46504 * 120.00580 * 295.20298 * 22 2 1 24 24 C 1.39673 * 119.99787 * 115.20302 * 22 2 1 25 25 C 1.38913 * 120.07695 * 5.46088 * 24 22 2 26 26 C 1.38097 * 119.92665 * 179.76858 * 25 24 22 27 27 C 1.38288 * 120.07907 * 0.50305 * 26 25 24 28 28 C 1.38292 * 120.14166 * 359.74577 * 27 26 25 29 29 C 1.38099 * 120.07876 * 0.02562 * 28 27 26 30 30 H 1.08993 * 109.46885 * 60.00462 * 1 2 3 31 31 H 1.09001 * 109.46886 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47359 * 299.99857 * 1 2 3 33 33 H 1.08996 * 109.47350 * 55.00661 * 4 2 1 34 34 H 1.08999 * 109.47769 * 295.00065 * 4 2 1 35 35 H 0.97005 * 119.99424 * 0.02562 * 5 4 2 36 36 H 1.08994 * 109.88781 * 300.43697 * 9 8 6 37 37 H 1.09002 * 109.88185 * 61.61144 * 9 8 6 38 38 H 1.08999 * 110.71784 * 140.56244 * 10 9 8 39 39 H 1.09000 * 110.71987 * 263.65598 * 10 9 8 40 40 H 0.96709 * 114.00029 * 180.02562 * 12 11 10 41 41 H 0.97002 * 119.99475 * 180.02562 * 16 15 13 42 42 H 1.08992 * 110.36903 * 274.74935 * 21 8 6 43 43 H 1.09006 * 110.36894 * 37.07291 * 21 8 6 44 44 H 1.08998 * 109.46602 * 89.99987 * 23 22 2 45 45 H 1.08993 * 109.47414 * 210.00255 * 23 22 2 46 46 H 1.09004 * 109.46420 * 330.00257 * 23 22 2 47 47 H 1.08007 * 120.03245 * 359.97438 * 25 24 22 48 48 H 1.08002 * 119.96176 * 180.24882 * 26 25 24 49 49 H 1.07991 * 119.92923 * 179.72197 * 27 26 25 50 50 H 1.08000 * 119.95825 * 179.97438 * 28 27 26 51 51 H 1.07998 * 120.03565 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1908 6 6 4.1730 -1.4281 2.1914 7 8 3.5684 -1.8842 3.1426 8 7 5.5162 -1.5253 2.1372 9 6 6.3687 -1.0203 1.0510 10 6 7.8265 -1.3797 1.4079 11 6 7.6604 -2.5633 2.3973 12 8 7.4720 -3.7942 1.6964 13 6 8.8371 -2.6533 3.3344 14 1 9.6464 -1.9424 3.2549 15 6 8.8803 -3.6425 4.2940 16 7 7.8947 -4.5077 4.3911 17 14 10.3386 -3.7535 5.4560 18 1 11.3053 -2.6708 5.1420 19 1 9.8680 -3.6054 6.8566 20 1 11.0017 -5.0723 5.2934 21 6 6.3744 -2.1499 3.1603 22 7 2.0184 -0.6907 -1.1960 23 6 1.7533 -2.1202 -1.3761 24 6 2.7368 0.0137 -2.1648 25 6 3.0872 1.3398 -1.9445 26 6 3.8017 2.0319 -2.9024 27 6 4.1594 1.4096 -4.0844 28 6 3.8077 0.0911 -4.3092 29 6 3.0973 -0.6083 -3.3535 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6054 -1.7197 1.2953 34 1 1.7516 -0.1583 2.1371 35 1 3.9824 -0.4621 0.4321 36 1 6.0899 -1.4943 0.1100 37 1 6.2631 0.0615 0.9693 38 1 8.3748 -1.6935 0.5197 39 1 8.3244 -0.5380 1.8894 40 1 7.3632 -4.5627 2.2733 41 1 7.9248 -5.2033 5.0664 42 1 6.6109 -1.4329 3.9464 43 1 5.8849 -3.0281 3.5815 44 1 0.8109 -2.2507 -1.9080 45 1 2.5614 -2.5698 -1.9530 46 1 1.6902 -2.6036 -0.4011 47 1 2.8040 1.8279 -1.0236 48 1 4.0779 3.0616 -2.7300 49 1 4.7142 1.9544 -4.8338 50 1 4.0882 -0.3919 -5.2335 51 1 2.8226 -1.6377 -3.5299 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591911837.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:11 Heat of formation + Delta-G solvation = -33.907399 kcal Electronic energy + Delta-G solvation = -31746.554756 eV Core-core repulsion = 27646.237641 eV Total energy + Delta-G solvation = -4100.317115 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.15602 -39.40698 -37.70321 -36.91924 -34.21643 -34.02894 -32.13513 -32.07256 -31.05391 -29.99619 -29.49645 -27.84164 -26.51037 -26.25146 -24.61221 -22.94239 -22.42732 -21.81816 -20.09660 -19.61530 -19.32368 -18.12434 -17.56752 -17.05217 -16.16949 -15.83423 -15.56747 -15.20922 -14.98876 -14.90774 -14.66542 -14.29796 -14.13452 -13.92556 -13.65545 -13.48867 -13.09562 -13.02125 -12.86656 -12.76626 -12.60359 -12.42099 -12.13657 -12.07073 -11.95766 -11.59701 -11.48226 -11.39832 -11.21597 -11.04926 -10.78387 -10.73440 -10.56076 -10.45658 -10.15863 -10.00945 -9.60883 -9.37344 -9.01935 -8.80079 -8.66972 -8.33801 -7.64079 -7.42503 -6.27641 -4.36942 1.34583 1.51613 2.84727 3.17104 3.22376 3.29384 3.32802 3.78273 3.80300 4.26223 4.39228 4.53494 4.65266 4.77865 4.89964 4.96264 4.99779 5.05348 5.14721 5.31714 5.37400 5.37761 5.41969 5.45455 5.49998 5.57694 5.60226 5.68725 5.70930 5.78845 5.83049 5.87201 5.95541 6.07401 6.14468 6.17041 6.40854 6.54211 6.55415 6.73875 6.76005 6.77939 6.89950 6.99399 7.10618 7.25380 7.35276 7.36905 7.67316 7.76330 8.02869 8.56991 8.67809 9.16835 9.32871 9.48741 10.79622 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014495 B = 0.002833 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.253369 B = 9881.002047 C =10939.992889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.133 3.867 3 H 0.097 0.903 4 C 0.129 3.871 5 N -0.746 5.746 6 C 0.716 3.284 7 O -0.600 6.600 8 N -0.626 5.626 9 C 0.109 3.891 10 C -0.116 4.116 11 C 0.250 3.750 12 O -0.584 6.584 13 C -0.537 4.537 14 H 0.067 0.933 15 C 0.070 3.930 16 N -0.894 5.894 17 Si 0.904 3.096 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.113 3.887 22 N -0.623 5.623 23 C 0.092 3.908 24 C 0.218 3.782 25 C -0.203 4.203 26 C -0.071 4.071 27 C -0.182 4.182 28 C -0.072 4.072 29 C -0.196 4.196 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.394 0.606 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.386 0.614 41 H 0.270 0.730 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.046 0.954 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.121 0.879 48 H 0.118 0.882 49 H 0.115 0.885 50 H 0.118 0.882 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.576 10.691 -14.558 22.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 H 0.115 0.885 4 C 0.003 3.997 5 N -0.404 5.404 6 C 0.418 3.582 7 O -0.480 6.480 8 N -0.363 5.363 9 C -0.015 4.015 10 C -0.154 4.154 11 C 0.209 3.791 12 O -0.394 6.394 13 C -0.575 4.575 14 H 0.086 0.914 15 C -0.133 4.133 16 N -0.533 5.533 17 Si 0.732 3.268 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.010 4.010 22 N -0.334 5.334 23 C -0.051 4.051 24 C 0.117 3.883 25 C -0.225 4.225 26 C -0.090 4.090 27 C -0.202 4.202 28 C -0.090 4.090 29 C -0.218 4.218 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.229 0.771 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.238 0.762 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.139 0.861 48 H 0.136 0.864 49 H 0.133 0.867 50 H 0.136 0.864 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.215 10.466 -14.107 21.981 hybrid contribution 0.861 -0.343 0.812 1.232 sum -12.354 10.122 -13.295 20.781 Atomic orbital electron populations 1.22091 0.94171 1.02898 1.02604 1.21367 0.94615 0.97275 0.83837 0.88535 1.21490 0.80315 1.01047 0.96872 1.44986 1.06625 1.64580 1.24186 1.15519 0.80809 0.79279 0.82627 1.90878 1.67326 1.54905 1.34850 1.47878 1.03250 1.60923 1.24230 1.21883 0.92559 0.96708 0.90353 1.22594 0.93164 0.99044 1.00599 1.19626 0.90313 0.81812 0.87370 1.86062 1.95404 1.18697 1.39229 1.21545 1.05385 1.14801 1.15791 0.91435 1.25088 0.96313 0.94989 0.96883 1.69582 1.31359 1.17103 1.35300 0.86337 0.82059 0.78141 0.80287 1.19571 1.20768 1.20750 1.23177 0.91168 0.96895 0.89710 1.46500 1.58580 1.08372 1.19970 1.21614 1.00513 0.80581 1.02380 1.17861 0.90722 0.91216 0.88506 1.20717 1.06531 0.93897 1.01389 1.20874 0.95783 0.99172 0.93144 1.20892 1.05162 0.95661 0.98524 1.20892 0.95816 0.94232 0.98087 1.20691 1.06384 1.00683 0.94070 0.91822 0.91950 0.91174 0.91594 0.90918 0.77137 0.92831 0.93372 0.90830 0.90530 0.76225 0.91953 0.92568 0.90182 0.93543 0.91335 0.91068 0.86134 0.86365 0.86675 0.86394 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.26 37.16 0.34 -0.83 16 2 C 0.13 1.22 2.75 -67.93 -0.19 1.04 16 3 H 0.10 0.84 5.31 -51.93 -0.28 0.56 16 4 C 0.13 1.59 4.80 -4.04 -0.02 1.57 16 5 N -0.75 -11.48 5.35 -65.22 -0.35 -11.83 16 6 C 0.72 14.82 8.49 -86.93 -0.74 14.08 16 7 O -0.60 -14.66 16.60 5.29 0.09 -14.57 16 8 N -0.63 -13.31 3.32 -176.09 -0.59 -13.90 16 9 C 0.11 1.98 6.15 -3.06 -0.02 1.96 16 10 C -0.12 -2.35 6.12 -24.89 -0.15 -2.50 16 11 C 0.25 6.12 0.89 -89.50 -0.08 6.04 16 12 O -0.58 -15.22 13.19 -35.23 -0.46 -15.68 16 13 C -0.54 -14.03 8.25 -34.44 -0.28 -14.31 16 14 H 0.07 1.73 7.77 -52.48 -0.41 1.32 16 15 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 16 N -0.89 -24.02 10.72 55.43 0.59 -23.43 16 17 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.11 2.76 5.64 -2.41 -0.01 2.75 16 22 N -0.62 -6.15 2.34 -171.99 -0.40 -6.55 16 23 C 0.09 0.87 9.30 59.85 0.56 1.43 16 24 C 0.22 2.32 6.54 -83.78 -0.55 1.77 16 25 C -0.20 -2.05 9.31 -39.38 -0.37 -2.42 16 26 C -0.07 -0.68 10.04 -39.61 -0.40 -1.08 16 27 C -0.18 -1.74 10.04 -39.54 -0.40 -2.13 16 28 C -0.07 -0.70 10.04 -39.61 -0.40 -1.09 16 29 C -0.20 -2.04 9.16 -39.38 -0.36 -2.40 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.47 7.79 -51.93 -0.40 0.06 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.88 6.77 -51.93 -0.35 0.52 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.39 5.64 7.12 -40.82 -0.29 5.35 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.08 1.45 8.02 -51.93 -0.42 1.04 16 40 H 0.39 10.43 6.93 45.56 0.32 10.74 16 41 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.06 1.41 8.04 -51.93 -0.42 0.99 16 43 H 0.08 2.22 7.64 -51.93 -0.40 1.83 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.66 6.46 -51.93 -0.34 0.33 16 46 H 0.07 0.74 6.30 -51.93 -0.33 0.41 16 47 H 0.12 1.09 5.74 -52.48 -0.30 0.79 16 48 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 49 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 50 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 51 H 0.12 1.14 6.31 -52.49 -0.33 0.81 16 LS Contribution 404.12 15.07 6.09 6.09 Total: -1.00 -30.73 404.12 -10.51 -41.23 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: -7.30 Total: 17.64 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -3.15 Total: 5.62 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.74 Total: -55.71 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.38 Total: -30.25 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.73 -10.51 -41.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591911837.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.325 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds