Wall clock time and date at job start Wed Apr 1 2020 04:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47346 * 2 1 4 4 C 1.53002 * 109.46692 * 119.99564 * 2 1 3 5 5 N 1.46506 * 109.47083 * 175.00117 * 4 2 1 6 6 C 1.34769 * 120.00193 * 179.97438 * 5 4 2 7 7 O 1.21590 * 120.00286 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99960 * 179.97438 * 6 5 4 9 9 C 1.47025 * 125.64766 * 0.02605 * 8 6 5 10 10 C 1.54329 * 107.27061 * 181.02178 * 9 8 6 11 11 C 1.55155 * 102.94288 * 22.19467 * 10 9 8 12 12 O 1.42897 * 111.00276 * 82.57104 * 11 10 9 13 13 C 1.50697 * 111.00611 * 206.38422 * 11 10 9 14 14 H 1.08004 * 120.00174 * 0.02562 * 13 11 10 15 15 C 1.37886 * 120.00107 * 179.97438 * 13 11 10 16 16 N 1.31508 * 119.99558 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 119.99893 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47297 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47405 * 120.00188 * 17 15 13 20 20 H 1.48503 * 109.47136 * 240.00151 * 17 15 13 21 21 C 1.47425 * 125.64936 * 179.71865 * 8 6 5 22 22 N 1.46493 * 109.47222 * 239.99440 * 2 1 3 23 23 C 1.46504 * 120.00580 * 295.20298 * 22 2 1 24 24 C 1.39673 * 119.99787 * 115.20302 * 22 2 1 25 25 C 1.38913 * 120.07695 * 5.46088 * 24 22 2 26 26 C 1.38097 * 119.92665 * 179.76858 * 25 24 22 27 27 C 1.38288 * 120.07907 * 0.50305 * 26 25 24 28 28 C 1.38292 * 120.14166 * 359.74577 * 27 26 25 29 29 C 1.38099 * 120.07876 * 0.02562 * 28 27 26 30 30 H 1.08993 * 109.46885 * 60.00462 * 1 2 3 31 31 H 1.09001 * 109.46886 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47359 * 299.99857 * 1 2 3 33 33 H 1.08996 * 109.47350 * 55.00661 * 4 2 1 34 34 H 1.08999 * 109.47769 * 295.00065 * 4 2 1 35 35 H 0.97005 * 119.99424 * 0.02562 * 5 4 2 36 36 H 1.08994 * 109.88781 * 300.43697 * 9 8 6 37 37 H 1.09002 * 109.88185 * 61.61144 * 9 8 6 38 38 H 1.08999 * 110.71784 * 140.56244 * 10 9 8 39 39 H 1.09000 * 110.71987 * 263.65598 * 10 9 8 40 40 H 0.96709 * 114.00029 * 180.02562 * 12 11 10 41 41 H 0.97002 * 119.99475 * 180.02562 * 16 15 13 42 42 H 1.08992 * 110.36903 * 274.74935 * 21 8 6 43 43 H 1.09006 * 110.36894 * 37.07291 * 21 8 6 44 44 H 1.08998 * 109.46602 * 89.99987 * 23 22 2 45 45 H 1.08993 * 109.47414 * 210.00255 * 23 22 2 46 46 H 1.09004 * 109.46420 * 330.00257 * 23 22 2 47 47 H 1.08007 * 120.03245 * 359.97438 * 25 24 22 48 48 H 1.08002 * 119.96176 * 180.24882 * 26 25 24 49 49 H 1.07991 * 119.92923 * 179.72197 * 27 26 25 50 50 H 1.08000 * 119.95825 * 179.97438 * 28 27 26 51 51 H 1.07998 * 120.03565 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1908 6 6 4.1730 -1.4281 2.1914 7 8 3.5684 -1.8842 3.1426 8 7 5.5162 -1.5253 2.1372 9 6 6.3687 -1.0203 1.0510 10 6 7.8265 -1.3797 1.4079 11 6 7.6604 -2.5633 2.3973 12 8 7.4720 -3.7942 1.6964 13 6 8.8371 -2.6533 3.3344 14 1 9.6464 -1.9424 3.2549 15 6 8.8803 -3.6425 4.2940 16 7 7.8947 -4.5077 4.3911 17 14 10.3386 -3.7535 5.4560 18 1 11.3053 -2.6708 5.1420 19 1 9.8680 -3.6054 6.8566 20 1 11.0017 -5.0723 5.2934 21 6 6.3744 -2.1499 3.1603 22 7 2.0184 -0.6907 -1.1960 23 6 1.7533 -2.1202 -1.3761 24 6 2.7368 0.0137 -2.1648 25 6 3.0872 1.3398 -1.9445 26 6 3.8017 2.0319 -2.9024 27 6 4.1594 1.4096 -4.0844 28 6 3.8077 0.0911 -4.3092 29 6 3.0973 -0.6083 -3.3535 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6054 -1.7197 1.2953 34 1 1.7516 -0.1583 2.1371 35 1 3.9824 -0.4621 0.4321 36 1 6.0899 -1.4943 0.1100 37 1 6.2631 0.0615 0.9693 38 1 8.3748 -1.6935 0.5197 39 1 8.3244 -0.5380 1.8894 40 1 7.3632 -4.5627 2.2733 41 1 7.9248 -5.2033 5.0664 42 1 6.6109 -1.4329 3.9464 43 1 5.8849 -3.0281 3.5815 44 1 0.8109 -2.2507 -1.9080 45 1 2.5614 -2.5698 -1.9530 46 1 1.6902 -2.6036 -0.4011 47 1 2.8040 1.8279 -1.0236 48 1 4.0779 3.0616 -2.7300 49 1 4.7142 1.9544 -4.8338 50 1 4.0882 -0.3919 -5.2335 51 1 2.8226 -1.6377 -3.5299 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591911837.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:10 Heat of formation + Delta-G solvation = -53.308011 kcal Electronic energy + Delta-G solvation = -31747.396029 eV Core-core repulsion = 27646.237641 eV Total energy + Delta-G solvation = -4101.158389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.38925 -40.56461 -39.18189 -38.05029 -36.07990 -35.24763 -34.15717 -33.03902 -31.82761 -31.59338 -30.22353 -29.62078 -27.74706 -27.11817 -26.25317 -24.11282 -23.62372 -22.57412 -21.48199 -21.08623 -20.68246 -19.28997 -18.86517 -18.83067 -17.42393 -17.03162 -16.92832 -16.53932 -16.37807 -16.24823 -15.86474 -15.47575 -15.27740 -15.01645 -14.80241 -14.66130 -14.61474 -14.37596 -13.95110 -13.79052 -13.68901 -13.49328 -13.43381 -13.31285 -13.14728 -12.87282 -12.85263 -12.76654 -12.53730 -12.31245 -12.20084 -12.15702 -12.12499 -11.96813 -11.47792 -11.36960 -11.23243 -10.74343 -10.65772 -10.35471 -10.19718 -9.74097 -9.33877 -8.26003 -8.17165 -6.42993 0.62400 0.78511 1.41176 1.44522 1.55628 1.66200 2.11866 2.16498 2.38261 3.00169 3.06192 3.08313 3.61377 3.78507 3.86441 4.03186 4.09597 4.15448 4.18616 4.27166 4.30118 4.31482 4.45485 4.53982 4.57428 4.63990 4.68558 4.70545 4.72493 4.74264 4.85306 4.87980 4.92852 5.02660 5.03457 5.07115 5.22948 5.26317 5.28661 5.36810 5.43136 5.43772 5.50511 5.70664 5.76242 5.84391 6.01441 6.06102 6.14740 6.35133 6.62494 6.64469 7.03546 7.29700 7.38736 7.55297 8.79947 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014495 B = 0.002833 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.253369 B = 9881.002047 C =10939.992889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.143 3.857 3 H 0.108 0.892 4 C 0.126 3.874 5 N -0.724 5.724 6 C 0.710 3.290 7 O -0.644 6.644 8 N -0.632 5.632 9 C 0.114 3.886 10 C -0.110 4.110 11 C 0.234 3.766 12 O -0.590 6.590 13 C -0.555 4.555 14 H 0.071 0.929 15 C 0.024 3.976 16 N -0.918 5.918 17 Si 0.967 3.033 18 H -0.262 1.262 19 H -0.283 1.283 20 H -0.280 1.280 21 C 0.127 3.873 22 N -0.626 5.626 23 C 0.094 3.906 24 C 0.206 3.794 25 C -0.212 4.212 26 C -0.077 4.077 27 C -0.190 4.190 28 C -0.080 4.080 29 C -0.210 4.210 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.404 0.596 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.377 0.623 41 H 0.270 0.730 42 H 0.043 0.957 43 H 0.037 0.963 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.130 0.870 48 H 0.137 0.863 49 H 0.131 0.869 50 H 0.132 0.868 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.375 12.733 -16.026 23.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.039 3.961 3 H 0.126 0.874 4 C 0.001 3.999 5 N -0.380 5.380 6 C 0.411 3.589 7 O -0.527 6.527 8 N -0.369 5.369 9 C -0.009 4.009 10 C -0.148 4.148 11 C 0.193 3.807 12 O -0.399 6.399 13 C -0.593 4.593 14 H 0.089 0.911 15 C -0.176 4.176 16 N -0.558 5.558 17 Si 0.792 3.208 18 H -0.186 1.186 19 H -0.209 1.209 20 H -0.205 1.205 21 C 0.003 3.997 22 N -0.337 5.337 23 C -0.049 4.049 24 C 0.104 3.896 25 C -0.234 4.234 26 C -0.096 4.096 27 C -0.210 4.210 28 C -0.099 4.099 29 C -0.233 4.233 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.239 0.761 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.227 0.773 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.148 0.852 48 H 0.154 0.846 49 H 0.149 0.851 50 H 0.150 0.850 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.024 12.551 -15.644 23.914 hybrid contribution 0.766 -0.973 1.220 1.738 sum -12.257 11.579 -14.425 22.190 Atomic orbital electron populations 1.22043 0.92461 1.03093 1.03493 1.21338 0.95727 0.97024 0.82000 0.87437 1.21722 0.78228 1.01067 0.98878 1.44838 1.07722 1.62747 1.22712 1.15749 0.80604 0.79387 0.83116 1.90842 1.68170 1.56807 1.36896 1.47827 1.03705 1.61041 1.24290 1.21996 0.90698 0.98802 0.89379 1.22596 0.94799 0.97486 0.99919 1.19872 0.89725 0.82406 0.88681 1.86052 1.95451 1.19073 1.39352 1.21868 1.06034 1.15038 1.16380 0.91065 1.25860 0.98648 0.94749 0.98351 1.69697 1.32841 1.17512 1.35783 0.85365 0.79134 0.78229 0.78041 1.18629 1.20883 1.20539 1.22727 0.91646 0.95039 0.90256 1.46536 1.58752 1.08405 1.20027 1.21590 1.01159 0.80484 1.01690 1.18017 0.91126 0.91667 0.88756 1.20898 1.06701 0.93779 1.02000 1.21163 0.95360 1.00089 0.92958 1.21179 1.05084 0.95741 0.99012 1.21154 0.95593 0.94578 0.98580 1.20864 1.06894 1.01083 0.94443 0.91180 0.92153 0.89967 0.92643 0.90854 0.76068 0.91967 0.89746 0.89870 0.89090 0.77255 0.92018 0.93891 0.94431 0.92048 0.91749 0.92392 0.85227 0.84551 0.85109 0.84964 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.26 71.98 0.67 -1.26 16 2 C 0.14 2.37 2.75 44.99 0.12 2.49 16 3 H 0.11 1.58 5.31 -2.39 -0.01 1.57 16 4 C 0.13 3.00 4.80 86.38 0.41 3.42 16 5 N -0.72 -21.53 5.35 -478.53 -2.56 -24.09 16 6 C 0.71 29.47 8.49 179.06 1.52 30.99 16 7 O -0.64 -32.36 16.60 -4.00 -0.07 -32.43 16 8 N -0.63 -26.78 3.32 -829.30 -2.76 -29.54 16 9 C 0.11 3.90 6.15 86.73 0.53 4.44 16 10 C -0.11 -4.27 6.12 31.78 0.19 -4.07 16 11 C 0.23 11.52 0.89 -10.07 -0.01 11.51 16 12 O -0.59 -31.29 13.19 -148.98 -1.97 -33.25 16 13 C -0.55 -29.05 8.25 25.60 0.21 -28.84 16 14 H 0.07 3.59 7.77 -2.91 -0.02 3.56 16 15 C 0.02 1.28 5.30 84.66 0.45 1.73 16 16 N -0.92 -50.67 10.72 21.45 0.23 -50.45 16 17 Si 0.97 41.93 29.54 68.60 2.03 43.96 16 18 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 21 C 0.13 6.41 5.64 86.93 0.49 6.90 16 22 N -0.63 -11.36 2.34 -698.07 -1.63 -13.00 16 23 C 0.09 1.69 9.30 127.77 1.19 2.88 16 24 C 0.21 3.98 6.54 38.22 0.25 4.23 16 25 C -0.21 -3.76 9.31 22.40 0.21 -3.55 16 26 C -0.08 -1.27 10.04 22.25 0.22 -1.05 16 27 C -0.19 -3.18 10.04 22.29 0.22 -2.96 16 28 C -0.08 -1.42 10.04 22.25 0.22 -1.20 16 29 C -0.21 -4.07 9.16 22.40 0.21 -3.86 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.80 7.79 -2.39 -0.02 0.79 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 1.47 6.77 -2.39 -0.02 1.45 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.40 10.71 7.12 -92.70 -0.66 10.05 16 36 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.09 3.24 8.02 -2.39 -0.02 3.22 16 40 H 0.38 21.12 6.93 -74.05 -0.51 20.61 16 41 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 42 H 0.04 2.23 8.04 -2.39 -0.02 2.21 16 43 H 0.04 2.18 7.64 -2.38 -0.02 2.17 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.06 1.20 6.46 -2.39 -0.02 1.19 16 46 H 0.06 1.20 6.30 -2.38 -0.02 1.18 16 47 H 0.13 1.98 5.74 -2.91 -0.02 1.96 16 48 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 49 H 0.13 1.70 8.06 -2.92 -0.02 1.67 16 50 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 51 H 0.12 2.20 6.31 -2.91 -0.02 2.18 16 Total: -1.00 -67.71 404.12 0.17 -67.54 By element: Atomic # 1 Polarization: 49.69 SS G_CDS: -0.22 Total: 49.47 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 7.12 Total: 21.78 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -6.72 Total: -117.07 kcal Atomic # 8 Polarization: -63.65 SS G_CDS: -2.03 Total: -65.68 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -67.71 0.17 -67.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591911837.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.235 kcal (2) G-P(sol) polarization free energy of solvation -67.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds