Wall clock time and date at job start Wed Apr 1 2020 05:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35673 * 116.99838 * 2 1 4 4 C 1.38921 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38388 * 119.11155 * 179.74658 * 4 3 2 6 6 C 1.38828 * 118.48103 * 0.53534 * 5 4 3 7 7 C 1.50697 * 120.35482 * 179.73282 * 6 5 4 8 8 H 1.09005 * 109.47061 * 339.73119 * 7 6 5 9 9 N 1.46900 * 109.47288 * 219.72727 * 7 6 5 10 10 C 1.46903 * 110.99706 * 155.00062 * 9 7 6 11 11 H 1.09001 * 109.47615 * 324.99593 * 10 9 7 12 12 C 1.52999 * 109.47370 * 85.00272 * 10 9 7 13 13 C 1.50701 * 109.46772 * 204.99936 * 10 9 7 14 14 O 1.21279 * 120.00318 * 0.02562 * 13 10 9 15 15 N 1.34781 * 119.99897 * 179.97438 * 13 10 9 16 16 C 1.46495 * 119.99973 * 0.02562 * 15 13 10 17 17 C 1.46498 * 119.99846 * 179.97438 * 15 13 10 18 18 C 1.50697 * 109.47291 * 90.00169 * 17 15 13 19 19 H 1.08005 * 119.99631 * 359.97438 * 18 17 15 20 20 C 1.37878 * 120.00554 * 180.02562 * 18 17 15 21 21 N 1.31510 * 119.99487 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00193 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46972 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47210 * 119.99780 * 22 20 18 25 25 H 1.48503 * 109.46559 * 239.99557 * 22 20 18 26 26 C 1.53003 * 109.47147 * 99.72510 * 7 6 5 27 27 C 1.53001 * 117.51964 * 231.28651 * 26 7 6 28 28 C 1.52999 * 60.00190 * 107.47982 * 27 26 7 29 29 C 1.38047 * 119.28959 * 359.46343 * 6 5 4 30 30 N 1.31963 * 120.83607 * 0.27626 * 29 6 5 31 31 H 1.09002 * 109.47479 * 59.99515 * 1 2 3 32 32 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47307 * 300.00063 * 1 2 3 34 34 H 1.08003 * 120.44840 * 0.02562 * 4 3 2 35 35 H 1.07990 * 120.75721 * 180.29633 * 5 4 3 36 36 H 1.00897 * 111.00116 * 278.94916 * 9 7 6 37 37 H 1.09009 * 109.46518 * 299.99804 * 12 10 9 38 38 H 1.09001 * 109.47306 * 59.99133 * 12 10 9 39 39 H 1.08991 * 109.47189 * 179.97438 * 12 10 9 40 40 H 1.09000 * 109.47261 * 89.99870 * 16 15 13 41 41 H 1.08998 * 109.47086 * 209.99607 * 16 15 13 42 42 H 1.09004 * 109.47432 * 330.00043 * 16 15 13 43 43 H 1.09001 * 109.46884 * 210.00120 * 17 15 13 44 44 H 1.09007 * 109.47187 * 330.00268 * 17 15 13 45 45 H 0.97005 * 120.00303 * 180.02562 * 21 20 18 46 46 H 1.09002 * 115.54973 * 85.58434 * 26 7 6 47 47 H 1.09001 * 117.49733 * 214.97413 * 27 26 7 48 48 H 1.08995 * 117.49577 * 359.97438 * 27 26 7 49 49 H 1.09004 * 117.50150 * 252.51496 * 28 27 26 50 50 H 1.09004 * 117.49681 * 107.48417 * 28 27 26 51 51 H 1.08002 * 119.58186 * 180.29594 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2739 0.0005 5 6 4.0485 2.5131 -0.0048 6 6 3.2505 3.6491 0.0009 7 6 3.8768 5.0198 0.0014 8 1 4.9061 4.9488 0.3532 9 7 3.1150 5.9059 0.8916 10 6 3.9566 7.0025 1.3888 11 1 4.9741 6.6411 1.5375 12 6 3.9642 8.1426 0.3685 13 6 3.4055 7.5044 2.6986 14 8 2.4101 6.9981 3.1715 15 7 4.0195 8.5152 3.3450 16 6 5.2222 9.1264 2.7741 17 6 3.4834 9.0034 4.6180 18 6 4.1065 8.2336 5.7538 19 1 4.8293 7.4579 5.5479 20 6 3.7533 8.5187 7.0557 21 7 2.8728 9.4629 7.3062 22 14 4.5263 7.5649 8.4635 23 1 5.4794 6.5646 7.9192 24 1 5.2501 8.5031 9.3586 25 1 3.4634 6.8684 9.2319 26 6 3.8615 5.5881 -1.4191 27 6 5.1800 6.1246 -1.9800 28 6 4.6075 4.8050 -2.5013 29 6 1.8771 3.5096 0.0003 30 7 1.3186 2.3140 -0.0001 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 4.0229 0.3694 0.0005 35 1 5.1254 2.5946 -0.0093 36 1 2.2923 6.2626 0.4291 37 1 4.3628 7.7795 -0.5789 38 1 2.9467 8.5040 0.2198 39 1 4.5882 8.9563 0.7376 40 1 4.9362 9.9559 2.1273 41 1 5.8589 9.4955 3.5781 42 1 5.7664 8.3827 2.1919 43 1 3.7148 10.0630 4.7271 44 1 2.4024 8.8639 4.6344 45 1 2.6245 9.6639 8.2222 46 1 2.9449 6.1008 -1.7104 47 1 5.1307 6.9904 -2.6404 48 1 6.0585 6.0732 -1.3370 49 1 5.1095 3.8851 -2.2012 50 1 4.1816 4.8026 -3.5047 51 1 1.2518 4.3902 -0.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599694602.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:41 Heat of formation + Delta-G solvation = 7.379396 kcal Electronic energy + Delta-G solvation = -31029.593640 eV Core-core repulsion = 26931.066855 eV Total energy + Delta-G solvation = -4098.526785 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.86183 -39.59039 -38.57694 -37.48770 -35.23669 -34.72399 -32.90750 -32.55290 -31.75504 -29.47733 -27.67687 -27.22276 -26.12583 -25.50435 -24.11989 -23.43352 -22.71455 -22.41328 -21.73027 -20.64959 -18.55177 -18.46731 -17.14906 -16.82189 -16.41847 -16.16314 -16.04481 -15.63783 -15.03346 -15.02733 -14.65146 -14.50751 -14.47346 -14.28430 -13.66344 -13.60648 -13.46980 -13.17622 -12.91282 -12.84034 -12.34723 -12.28681 -12.12964 -12.04753 -11.93532 -11.82152 -11.64789 -11.41510 -11.28134 -11.14164 -11.10624 -10.82113 -10.70516 -10.55054 -10.31070 -10.11526 -9.94707 -9.64978 -9.56056 -8.85541 -8.45899 -8.40402 -8.23686 -7.55956 -6.00862 -4.05093 1.11035 1.18783 2.98971 3.32110 3.39777 3.43137 3.45764 3.55388 3.62987 3.77139 4.25633 4.29208 4.45944 4.49041 4.59204 4.70846 4.81898 4.83614 4.96152 5.06659 5.07966 5.09153 5.16341 5.18675 5.21936 5.28995 5.33634 5.35730 5.38916 5.48406 5.54836 5.59192 5.65432 5.76700 5.79882 5.80487 5.83168 5.86237 5.93267 6.07479 6.20690 6.28298 6.33051 6.86192 7.12232 7.16219 7.34950 7.49361 7.61266 7.80927 7.96489 8.28007 8.50558 8.95998 9.22375 9.60236 11.07196 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009792 B = 0.002890 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.745123 B = 9685.069901 C =11617.232593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.312 6.312 3 C 0.312 3.688 4 C -0.191 4.191 5 C -0.038 4.038 6 C -0.145 4.145 7 C 0.169 3.831 8 H 0.089 0.911 9 N -0.652 5.652 10 C 0.073 3.927 11 H 0.096 0.904 12 C -0.197 4.197 13 C 0.508 3.492 14 O -0.521 6.521 15 N -0.606 5.606 16 C 0.084 3.916 17 C 0.247 3.753 18 C -0.523 4.523 19 H 0.057 0.943 20 C 0.060 3.940 21 N -0.896 5.896 22 Si 0.897 3.103 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.283 1.283 26 C -0.179 4.179 27 C -0.175 4.175 28 C -0.172 4.172 29 C 0.167 3.833 30 N -0.538 5.538 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.348 0.652 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.045 0.955 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.030 0.970 44 H 0.043 0.957 45 H 0.262 0.738 46 H 0.107 0.893 47 H 0.094 0.906 48 H 0.096 0.904 49 H 0.094 0.906 50 H 0.091 0.909 51 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 -10.477 -23.001 25.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.219 6.219 3 C 0.133 3.867 4 C -0.211 4.211 5 C -0.064 4.064 6 C -0.148 4.148 7 C 0.058 3.942 8 H 0.107 0.893 9 N -0.282 5.282 10 C -0.040 4.040 11 H 0.113 0.887 12 C -0.256 4.256 13 C 0.293 3.707 14 O -0.396 6.396 15 N -0.339 5.339 16 C -0.061 4.061 17 C 0.127 3.873 18 C -0.562 4.562 19 H 0.075 0.925 20 C -0.142 4.142 21 N -0.535 5.535 22 Si 0.725 3.275 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.199 4.199 27 C -0.212 4.212 28 C -0.210 4.210 29 C 0.011 3.989 30 N -0.261 5.261 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.168 0.832 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.125 0.875 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.113 0.887 50 H 0.110 0.890 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.769 -11.393 -21.989 24.920 hybrid contribution 1.176 0.337 0.126 1.230 sum 3.945 -11.056 -21.863 24.815 Atomic orbital electron populations 1.22831 0.77341 1.02684 1.02580 1.86207 1.22859 1.24822 1.88062 1.19836 0.89411 0.84737 0.92730 1.20954 0.91999 0.99271 1.08898 1.21196 1.00159 0.90789 0.94216 1.20451 0.94846 0.95119 1.04372 1.19944 0.97231 0.88819 0.88178 0.89342 1.60203 1.08002 1.20057 1.39929 1.21505 0.97458 0.91161 0.93921 0.88656 1.22867 1.03362 0.99711 0.99651 1.20160 0.84755 0.80265 0.85481 1.90672 1.25593 1.55906 1.67391 1.48118 1.27093 1.34594 1.24116 1.21744 0.88391 0.97162 0.98754 1.19251 0.95896 0.94222 0.77885 1.21481 1.24529 1.19295 0.90881 0.92486 1.24936 0.95135 0.95297 0.98808 1.69942 1.32343 1.31068 1.20145 0.86457 0.79146 0.79829 0.82078 1.19823 1.21018 1.20881 1.23258 0.96795 1.04434 0.95408 1.23035 0.96696 0.97678 1.03787 1.22912 1.03973 0.95692 0.98375 1.22128 0.92349 0.93237 0.91223 1.67337 1.40866 0.98791 1.19127 0.92417 0.88861 0.92163 0.84378 0.84513 0.83220 0.91060 0.92228 0.90347 0.93648 0.91015 0.92570 0.95158 0.93923 0.92830 0.87514 0.88737 0.88598 0.88741 0.89008 0.82579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.38 101.05 1.05 1.43 16 2 O -0.31 -3.78 10.48 -18.72 -0.20 -3.97 16 3 C 0.31 4.01 7.49 -17.12 -0.13 3.88 16 4 C -0.19 -2.09 10.04 -39.27 -0.39 -2.48 16 5 C -0.04 -0.38 9.37 -39.31 -0.37 -0.75 16 6 C -0.14 -1.62 4.62 -104.48 -0.48 -2.10 16 7 C 0.17 1.71 2.43 -68.86 -0.17 1.54 16 8 H 0.09 0.88 7.08 -51.93 -0.37 0.51 16 9 N -0.65 -8.59 5.00 -102.16 -0.51 -9.10 16 10 C 0.07 1.02 2.19 -68.86 -0.15 0.87 16 11 H 0.10 1.24 6.69 -51.93 -0.35 0.89 16 12 C -0.20 -2.12 8.56 37.16 0.32 -1.80 16 13 C 0.51 10.42 7.14 -10.98 -0.08 10.34 16 14 O -0.52 -13.28 16.01 5.56 0.09 -13.19 16 15 N -0.61 -12.66 2.86 -182.96 -0.52 -13.18 16 16 C 0.08 1.27 8.80 59.84 0.53 1.80 16 17 C 0.25 6.50 5.16 -5.20 -0.03 6.47 16 18 C -0.52 -15.02 9.39 -34.44 -0.32 -15.35 16 19 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 22 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 23 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 26 C -0.18 -1.42 3.80 -90.61 -0.34 -1.76 16 27 C -0.18 -1.18 8.37 -26.73 -0.22 -1.41 16 28 C -0.17 -1.21 9.87 -26.73 -0.26 -1.48 16 29 C 0.17 2.10 10.48 -17.57 -0.18 1.91 16 30 N -0.54 -7.31 9.22 -13.33 -0.12 -7.44 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 34 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.35 4.30 7.44 -39.29 -0.29 4.01 16 37 H 0.07 0.60 4.70 -51.92 -0.24 0.36 16 38 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 39 H 0.08 0.82 4.53 -51.93 -0.24 0.59 16 40 H 0.05 0.59 6.95 -51.93 -0.36 0.23 16 41 H 0.07 1.14 8.07 -51.93 -0.42 0.73 16 42 H 0.06 0.69 6.01 -51.93 -0.31 0.38 16 43 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 44 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.11 0.85 7.93 -51.93 -0.41 0.44 16 47 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.10 0.63 8.05 -51.93 -0.42 0.21 16 49 H 0.09 0.66 7.69 -51.93 -0.40 0.26 16 50 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 51 H 0.16 1.83 7.26 -52.49 -0.38 1.45 16 LS Contribution 410.15 15.07 6.18 6.18 Total: -1.00 -35.52 410.15 -8.62 -44.15 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.92 Total: 2.79 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.34 Total: 2.77 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.42 Total: -55.93 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.11 Total: -17.17 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.52 -8.62 -44.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599694602.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.527 kcal (2) G-P(sol) polarization free energy of solvation -35.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds