Wall clock time and date at job start Wed Apr 1 2020 05:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35673 * 116.99838 * 2 1 4 4 C 1.38921 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38388 * 119.11155 * 179.74658 * 4 3 2 6 6 C 1.38828 * 118.48103 * 0.53534 * 5 4 3 7 7 C 1.50697 * 120.35482 * 179.73282 * 6 5 4 8 8 H 1.09005 * 109.47061 * 339.73119 * 7 6 5 9 9 N 1.46900 * 109.47288 * 219.72727 * 7 6 5 10 10 C 1.46903 * 110.99706 * 155.00062 * 9 7 6 11 11 H 1.09001 * 109.47615 * 324.99593 * 10 9 7 12 12 C 1.52999 * 109.47370 * 85.00272 * 10 9 7 13 13 C 1.50701 * 109.46772 * 204.99936 * 10 9 7 14 14 O 1.21279 * 120.00318 * 0.02562 * 13 10 9 15 15 N 1.34781 * 119.99897 * 179.97438 * 13 10 9 16 16 C 1.46495 * 119.99973 * 0.02562 * 15 13 10 17 17 C 1.46498 * 119.99846 * 179.97438 * 15 13 10 18 18 C 1.50697 * 109.47291 * 90.00169 * 17 15 13 19 19 H 1.08005 * 119.99631 * 359.97438 * 18 17 15 20 20 C 1.37878 * 120.00554 * 180.02562 * 18 17 15 21 21 N 1.31510 * 119.99487 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00193 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46972 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47210 * 119.99780 * 22 20 18 25 25 H 1.48503 * 109.46559 * 239.99557 * 22 20 18 26 26 C 1.53003 * 109.47147 * 99.72510 * 7 6 5 27 27 C 1.53001 * 117.51964 * 231.28651 * 26 7 6 28 28 C 1.52999 * 60.00190 * 107.47982 * 27 26 7 29 29 C 1.38047 * 119.28959 * 359.46343 * 6 5 4 30 30 N 1.31963 * 120.83607 * 0.27626 * 29 6 5 31 31 H 1.09002 * 109.47479 * 59.99515 * 1 2 3 32 32 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47307 * 300.00063 * 1 2 3 34 34 H 1.08003 * 120.44840 * 0.02562 * 4 3 2 35 35 H 1.07990 * 120.75721 * 180.29633 * 5 4 3 36 36 H 1.00897 * 111.00116 * 278.94916 * 9 7 6 37 37 H 1.09009 * 109.46518 * 299.99804 * 12 10 9 38 38 H 1.09001 * 109.47306 * 59.99133 * 12 10 9 39 39 H 1.08991 * 109.47189 * 179.97438 * 12 10 9 40 40 H 1.09000 * 109.47261 * 89.99870 * 16 15 13 41 41 H 1.08998 * 109.47086 * 209.99607 * 16 15 13 42 42 H 1.09004 * 109.47432 * 330.00043 * 16 15 13 43 43 H 1.09001 * 109.46884 * 210.00120 * 17 15 13 44 44 H 1.09007 * 109.47187 * 330.00268 * 17 15 13 45 45 H 0.97005 * 120.00303 * 180.02562 * 21 20 18 46 46 H 1.09002 * 115.54973 * 85.58434 * 26 7 6 47 47 H 1.09001 * 117.49733 * 214.97413 * 27 26 7 48 48 H 1.08995 * 117.49577 * 359.97438 * 27 26 7 49 49 H 1.09004 * 117.50150 * 252.51496 * 28 27 26 50 50 H 1.09004 * 117.49681 * 107.48417 * 28 27 26 51 51 H 1.08002 * 119.58186 * 180.29594 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2739 0.0005 5 6 4.0485 2.5131 -0.0048 6 6 3.2505 3.6491 0.0009 7 6 3.8768 5.0198 0.0014 8 1 4.9061 4.9488 0.3532 9 7 3.1150 5.9059 0.8916 10 6 3.9566 7.0025 1.3888 11 1 4.9741 6.6411 1.5375 12 6 3.9642 8.1426 0.3685 13 6 3.4055 7.5044 2.6986 14 8 2.4101 6.9981 3.1715 15 7 4.0195 8.5152 3.3450 16 6 5.2222 9.1264 2.7741 17 6 3.4834 9.0034 4.6180 18 6 4.1065 8.2336 5.7538 19 1 4.8293 7.4579 5.5479 20 6 3.7533 8.5187 7.0557 21 7 2.8728 9.4629 7.3062 22 14 4.5263 7.5649 8.4635 23 1 5.4794 6.5646 7.9192 24 1 5.2501 8.5031 9.3586 25 1 3.4634 6.8684 9.2319 26 6 3.8615 5.5881 -1.4191 27 6 5.1800 6.1246 -1.9800 28 6 4.6075 4.8050 -2.5013 29 6 1.8771 3.5096 0.0003 30 7 1.3186 2.3140 -0.0001 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 4.0229 0.3694 0.0005 35 1 5.1254 2.5946 -0.0093 36 1 2.2923 6.2626 0.4291 37 1 4.3628 7.7795 -0.5789 38 1 2.9467 8.5040 0.2198 39 1 4.5882 8.9563 0.7376 40 1 4.9362 9.9559 2.1273 41 1 5.8589 9.4955 3.5781 42 1 5.7664 8.3827 2.1919 43 1 3.7148 10.0630 4.7271 44 1 2.4024 8.8639 4.6344 45 1 2.6245 9.6639 8.2222 46 1 2.9449 6.1008 -1.7104 47 1 5.1307 6.9904 -2.6404 48 1 6.0585 6.0732 -1.3370 49 1 5.1095 3.8851 -2.2012 50 1 4.1816 4.8026 -3.5047 51 1 1.2518 4.3902 -0.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599694602.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:40 Heat of formation + Delta-G solvation = -18.397031 kcal Electronic energy + Delta-G solvation = -31030.711390 eV Core-core repulsion = 26931.066855 eV Total energy + Delta-G solvation = -4099.644535 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.73451 -40.86869 -39.62382 -38.31812 -36.54945 -36.13657 -34.72785 -33.65807 -32.75043 -30.63519 -29.28576 -28.14940 -27.51011 -26.43736 -25.63236 -24.53807 -23.51077 -23.08525 -23.02810 -21.37998 -19.99333 -19.36103 -18.68830 -18.05282 -17.99234 -17.21731 -16.99803 -16.78988 -16.49747 -16.04843 -15.92905 -15.66523 -15.47317 -15.22647 -14.90892 -14.65046 -14.40067 -14.26345 -14.14491 -14.03474 -13.69562 -13.50075 -13.31632 -13.19031 -13.11141 -12.84631 -12.72165 -12.63053 -12.54239 -12.37879 -12.31068 -12.23932 -12.15317 -11.97986 -11.64957 -11.28358 -10.98794 -10.79310 -10.64440 -10.56681 -10.31282 -9.40722 -9.31627 -9.21877 -8.21425 -6.36053 0.22354 0.33932 1.35121 1.38327 1.49745 1.98269 2.18129 2.29863 2.43212 2.78100 2.93921 3.07669 3.22494 3.39687 3.72480 3.83474 3.94480 4.01433 4.10140 4.13737 4.18377 4.21814 4.23945 4.33652 4.40360 4.44248 4.45809 4.48800 4.67075 4.69058 4.73821 4.81677 4.85215 4.88511 4.89856 4.98438 5.01201 5.06303 5.11186 5.24447 5.25811 5.32419 5.35399 5.37153 5.51755 5.59112 5.87457 6.03498 6.09106 6.26140 6.38704 6.73236 6.89967 6.91741 7.30949 7.63671 8.85406 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009792 B = 0.002890 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.745123 B = 9685.069901 C =11617.232593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.322 6.322 3 C 0.287 3.713 4 C -0.191 4.191 5 C -0.035 4.035 6 C -0.146 4.146 7 C 0.178 3.822 8 H 0.099 0.901 9 N -0.676 5.676 10 C 0.091 3.909 11 H 0.116 0.884 12 C -0.186 4.186 13 C 0.496 3.504 14 O -0.585 6.585 15 N -0.612 5.612 16 C 0.077 3.923 17 C 0.261 3.739 18 C -0.538 4.538 19 H 0.051 0.949 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.966 3.034 23 H -0.267 1.267 24 H -0.267 1.267 25 H -0.284 1.284 26 C -0.186 4.186 27 C -0.164 4.164 28 C -0.170 4.170 29 C 0.144 3.856 30 N -0.561 5.561 31 H 0.056 0.944 32 H 0.123 0.877 33 H 0.046 0.954 34 H 0.160 0.840 35 H 0.170 0.830 36 H 0.348 0.652 37 H 0.101 0.899 38 H 0.049 0.951 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.023 0.977 44 H -0.007 1.007 45 H 0.266 0.734 46 H 0.104 0.896 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.098 0.902 50 H 0.094 0.906 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.332 -11.155 -24.649 28.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.230 6.230 3 C 0.109 3.891 4 C -0.212 4.212 5 C -0.060 4.060 6 C -0.149 4.149 7 C 0.068 3.932 8 H 0.117 0.883 9 N -0.306 5.306 10 C -0.022 4.022 11 H 0.134 0.866 12 C -0.245 4.245 13 C 0.284 3.716 14 O -0.465 6.465 15 N -0.345 5.345 16 C -0.065 4.065 17 C 0.139 3.861 18 C -0.577 4.577 19 H 0.070 0.930 20 C -0.193 4.193 21 N -0.570 5.570 22 Si 0.791 3.209 23 H -0.191 1.191 24 H -0.192 1.192 25 H -0.210 1.210 26 C -0.206 4.206 27 C -0.200 4.200 28 C -0.208 4.208 29 C -0.011 4.011 30 N -0.285 5.285 31 H 0.074 0.926 32 H 0.141 0.859 33 H 0.065 0.935 34 H 0.177 0.823 35 H 0.187 0.813 36 H 0.168 0.832 37 H 0.120 0.880 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.113 0.887 43 H 0.041 0.959 44 H 0.012 0.988 45 H 0.075 0.925 46 H 0.122 0.878 47 H 0.123 0.877 48 H 0.124 0.876 49 H 0.116 0.884 50 H 0.112 0.888 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.001 -12.050 -23.686 27.244 hybrid contribution 0.124 0.537 0.609 0.821 sum 6.125 -11.512 -23.077 26.506 Atomic orbital electron populations 1.22975 0.76356 1.04408 1.01823 1.86190 1.23944 1.24680 1.88186 1.20213 0.90429 0.84741 0.93720 1.21296 0.91401 1.00596 1.07871 1.21573 1.01651 0.89907 0.92897 1.20646 0.94326 0.96283 1.03626 1.19912 0.96833 0.87489 0.88991 0.88309 1.60058 1.08655 1.20360 1.41560 1.21347 0.97503 0.92498 0.90835 0.86641 1.22808 1.03265 0.98596 0.99797 1.21483 0.83798 0.79097 0.87244 1.90633 1.28491 1.57881 1.69456 1.48139 1.28750 1.35072 1.22530 1.22081 0.86283 0.99004 0.99092 1.18693 0.93167 0.93723 0.80539 1.21743 1.24565 1.19366 0.92041 0.93025 1.25862 0.95562 0.96227 1.01652 1.70058 1.33482 1.32420 1.20996 0.85386 0.78265 0.78638 0.78628 1.19116 1.19209 1.20996 1.23057 0.97686 1.05581 0.94275 1.23141 0.95807 0.97732 1.03367 1.22953 1.03573 0.96188 0.98057 1.22226 0.93403 0.92968 0.92511 1.67262 1.41866 0.99391 1.19938 0.92566 0.85887 0.93521 0.82280 0.81280 0.83161 0.88037 0.93233 0.89507 0.90764 0.91934 0.88698 0.95932 0.98841 0.92472 0.87752 0.87748 0.87637 0.88381 0.88799 0.83000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.38 113.37 1.18 1.92 16 2 O -0.32 -7.79 10.48 -89.90 -0.94 -8.74 16 3 C 0.29 7.41 7.49 84.79 0.63 8.05 16 4 C -0.19 -3.92 10.04 22.47 0.23 -3.69 16 5 C -0.03 -0.62 9.37 22.45 0.21 -0.41 16 6 C -0.15 -3.08 4.62 -19.77 -0.09 -3.17 16 7 C 0.18 3.20 2.43 44.17 0.11 3.31 16 8 H 0.10 1.58 7.08 -2.38 -0.02 1.57 16 9 N -0.68 -17.23 5.00 -477.14 -2.39 -19.62 16 10 C 0.09 2.38 2.19 44.17 0.10 2.47 16 11 H 0.12 2.57 6.69 -2.39 -0.02 2.55 16 12 C -0.19 -3.43 8.56 71.98 0.62 -2.82 16 13 C 0.50 20.52 7.14 87.66 0.63 21.15 16 14 O -0.59 -31.34 16.01 -3.03 -0.05 -31.39 16 15 N -0.61 -25.74 2.86 -851.13 -2.43 -28.17 16 16 C 0.08 2.18 8.80 127.77 1.12 3.31 16 17 C 0.26 14.30 5.16 85.63 0.44 14.74 16 18 C -0.54 -31.68 9.39 25.60 0.24 -31.44 16 19 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 20 C 0.01 0.33 5.46 84.66 0.46 0.79 16 21 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 22 Si 0.97 45.90 29.54 68.60 2.03 47.93 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 26 C -0.19 -2.43 3.80 -10.79 -0.04 -2.47 16 27 C -0.16 -1.52 8.37 30.59 0.26 -1.27 16 28 C -0.17 -1.86 9.87 30.60 0.30 -1.55 16 29 C 0.14 3.72 10.48 84.63 0.89 4.60 16 30 N -0.56 -15.73 9.22 -308.96 -2.85 -18.58 16 31 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 32 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 34 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.17 1.86 8.06 -2.92 -0.02 1.84 16 36 H 0.35 8.65 7.44 -89.70 -0.67 7.98 16 37 H 0.10 1.28 4.70 -2.38 -0.01 1.27 16 38 H 0.05 1.04 8.13 -2.39 -0.02 1.02 16 39 H 0.09 1.47 4.53 -2.39 -0.01 1.46 16 40 H 0.07 1.69 6.95 -2.39 -0.02 1.67 16 41 H 0.06 1.89 8.07 -2.39 -0.02 1.88 16 42 H 0.09 1.94 6.01 -2.38 -0.01 1.93 16 43 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 44 H -0.01 -0.42 7.42 -2.38 -0.02 -0.44 16 45 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 46 H 0.10 1.45 7.93 -2.39 -0.02 1.43 16 47 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.11 0.84 8.05 -2.39 -0.02 0.82 16 49 H 0.10 1.02 7.69 -2.39 -0.02 1.00 16 50 H 0.09 1.00 8.14 -2.38 -0.02 0.99 16 51 H 0.15 3.82 7.26 -2.91 -0.02 3.80 16 Total: -1.00 -82.50 410.15 1.21 -81.29 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.28 Total: 20.79 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 7.28 Total: 13.52 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -7.38 Total: -123.41 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -0.99 Total: -40.12 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -82.50 1.21 -81.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599694602.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.894 kcal (2) G-P(sol) polarization free energy of solvation -82.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds