Wall clock time and date at job start Wed Apr 1 2020 05:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35680 * 117.00175 * 2 1 4 4 C 1.38919 * 119.68386 * 180.02562 * 3 2 1 5 5 C 1.38378 * 119.11063 * 180.02562 * 4 3 2 6 6 C 1.38827 * 118.48362 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.35300 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47024 * 20.00411 * 7 6 5 9 9 N 1.46901 * 109.47352 * 140.00503 * 7 6 5 10 10 C 1.46902 * 110.99996 * 205.00378 * 9 7 6 11 11 H 1.08996 * 109.46856 * 324.99605 * 10 9 7 12 12 C 1.52998 * 109.47088 * 84.99665 * 10 9 7 13 13 C 1.50707 * 109.46674 * 204.99627 * 10 9 7 14 14 O 1.21283 * 119.99964 * 0.02562 * 13 10 9 15 15 N 1.34775 * 119.99844 * 179.97438 * 13 10 9 16 16 C 1.46503 * 119.99714 * 0.02562 * 15 13 10 17 17 C 1.46493 * 120.00276 * 179.97438 * 15 13 10 18 18 C 1.50699 * 109.46995 * 89.99808 * 17 15 13 19 19 H 1.08003 * 120.00357 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00383 * 180.02562 * 18 17 15 21 21 N 1.31512 * 120.00346 * 180.02562 * 20 18 17 22 22 Si 1.86808 * 119.99532 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47213 * 89.99896 * 22 20 18 24 24 H 1.48503 * 109.46811 * 210.00076 * 22 20 18 25 25 H 1.48504 * 109.47172 * 329.99326 * 22 20 18 26 26 C 1.53006 * 109.47152 * 260.00546 * 7 6 5 27 27 C 1.53000 * 117.49988 * 128.75099 * 26 7 6 28 28 C 1.52993 * 117.50097 * 60.08547 * 26 7 6 29 29 C 1.38045 * 119.29131 * 0.25962 * 6 5 4 30 30 N 1.31964 * 120.83492 * 359.44827 * 29 6 5 31 31 H 1.09004 * 109.47652 * 59.99449 * 1 2 3 32 32 H 1.09000 * 109.47662 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46790 * 300.00084 * 1 2 3 34 34 H 1.08003 * 120.44317 * 0.02562 * 4 3 2 35 35 H 1.08002 * 120.75466 * 180.02562 * 5 4 3 36 36 H 1.00896 * 110.99863 * 81.04244 * 9 7 6 37 37 H 1.08996 * 109.47321 * 60.00225 * 12 10 9 38 38 H 1.09004 * 109.46544 * 179.97438 * 12 10 9 39 39 H 1.08990 * 109.47363 * 299.99532 * 12 10 9 40 40 H 1.09004 * 109.46896 * 90.00302 * 16 15 13 41 41 H 1.08996 * 109.46864 * 209.99336 * 16 15 13 42 42 H 1.08998 * 109.47517 * 330.00038 * 16 15 13 43 43 H 1.08990 * 109.47534 * 210.00202 * 17 15 13 44 44 H 1.09002 * 109.46961 * 330.00451 * 17 15 13 45 45 H 0.97001 * 119.99495 * 180.02562 * 21 20 18 46 46 H 1.08998 * 115.54561 * 274.41439 * 26 7 6 47 47 H 1.09002 * 117.50034 * 359.97438 * 27 26 7 48 48 H 1.08994 * 117.49821 * 145.02184 * 27 26 7 49 49 H 1.08998 * 117.50372 * 214.98185 * 28 26 7 50 50 H 1.09006 * 117.50059 * 359.97438 * 28 26 7 51 51 H 1.08003 * 119.58047 * 179.72529 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2739 -0.0005 5 6 4.0485 2.5131 0.0000 6 6 3.2505 3.6490 0.0005 7 6 3.8769 5.0197 0.0017 8 1 4.9063 4.9490 -0.3495 9 7 3.1157 5.9068 -0.8881 10 6 3.9576 7.0038 -1.3838 11 1 4.6612 7.3015 -0.6064 12 6 4.7300 6.5359 -2.6188 13 6 3.0875 8.1784 -1.7506 14 8 1.8846 8.1086 -1.6121 15 7 3.6462 9.3067 -2.2314 16 6 5.0992 9.3911 -2.3981 17 6 2.8004 10.4483 -2.5885 18 6 2.6317 11.3434 -1.3879 19 1 3.1073 11.0877 -0.4526 20 6 1.8702 12.4888 -1.4835 21 7 1.7235 13.2702 -0.4359 22 14 1.0470 12.9307 -3.1011 23 1 -0.3076 12.3240 -3.1491 24 1 0.9323 14.4072 -3.2110 25 1 1.8619 12.4123 -4.2291 26 6 3.8607 5.5867 1.4228 27 6 5.1788 6.1233 1.9844 28 6 4.6058 4.8026 2.5048 29 6 1.8771 3.5096 0.0060 30 7 1.3186 2.3140 -0.0003 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 4.0228 0.3694 -0.0014 35 1 5.1255 2.5945 -0.0008 36 1 2.2926 6.2630 -0.4258 37 1 4.0263 6.2381 -3.3962 38 1 5.3543 7.3501 -2.9869 39 1 5.3592 5.6864 -2.3536 40 1 5.3710 9.0481 -3.3964 41 1 5.4202 10.4247 -2.2692 42 1 5.5876 8.7633 -1.6527 43 1 3.2693 11.0091 -3.3968 44 1 1.8240 10.0893 -2.9140 45 1 1.1874 14.0759 -0.5032 46 1 2.9438 6.0992 1.7139 47 1 6.0577 6.0721 1.3417 48 1 5.1291 6.9885 2.6454 49 1 4.1795 4.7995 3.5079 50 1 5.1073 3.8825 2.2044 51 1 1.2519 4.3902 0.0109 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599694603.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:45 Heat of formation + Delta-G solvation = 6.905182 kcal Electronic energy + Delta-G solvation = -31018.903857 eV Core-core repulsion = 26920.356508 eV Total energy + Delta-G solvation = -4098.547349 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.89638 -39.70628 -38.65896 -37.44139 -35.28078 -34.96094 -32.88095 -32.57662 -31.77164 -29.74942 -28.17829 -27.43280 -26.32884 -25.65868 -23.83408 -23.41512 -22.66854 -22.35356 -21.47661 -20.42102 -18.66343 -18.53407 -17.19454 -16.98697 -16.84204 -16.17584 -16.09429 -15.93019 -15.20526 -15.01057 -14.73389 -14.66645 -14.43307 -14.29251 -13.60046 -13.56692 -13.46481 -13.29675 -13.12015 -12.62484 -12.46875 -12.36462 -12.31830 -12.06951 -11.98930 -11.81403 -11.69558 -11.55591 -11.43623 -11.20184 -11.14185 -10.92550 -10.66511 -10.53681 -10.30824 -10.16653 -10.00681 -9.67097 -9.57341 -9.00789 -8.61506 -8.55805 -8.39807 -7.74693 -6.11495 -4.10471 1.05433 1.13220 2.93507 3.27561 3.28408 3.33717 3.35995 3.53542 3.61060 3.71086 4.15886 4.22139 4.37552 4.53766 4.63836 4.80175 4.81606 4.83697 4.90000 4.96923 5.03566 5.12932 5.13773 5.16406 5.21642 5.25909 5.35935 5.38145 5.43918 5.48063 5.53878 5.60983 5.70649 5.73249 5.78001 5.80697 5.85159 5.95140 5.96586 6.08427 6.18299 6.28582 6.30801 6.63782 6.86709 6.97250 7.08277 7.28296 7.39047 7.57972 7.76187 8.19640 8.43438 8.87494 8.93168 9.48817 11.01787 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014137 B = 0.002498 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.197529 B =11206.664342 C =11838.849379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.313 6.313 3 C 0.310 3.690 4 C -0.191 4.191 5 C -0.038 4.038 6 C -0.143 4.143 7 C 0.168 3.832 8 H 0.089 0.911 9 N -0.662 5.662 10 C 0.068 3.932 11 H 0.071 0.929 12 C -0.147 4.147 13 C 0.508 3.492 14 O -0.534 6.534 15 N -0.594 5.594 16 C 0.081 3.919 17 C 0.216 3.784 18 C -0.529 4.529 19 H 0.073 0.927 20 C 0.072 3.928 21 N -0.897 5.897 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.266 1.266 26 C -0.185 4.185 27 C -0.174 4.174 28 C -0.170 4.170 29 C 0.165 3.835 30 N -0.538 5.538 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.359 0.641 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.030 0.970 44 H 0.037 0.963 45 H 0.265 0.735 46 H 0.109 0.891 47 H 0.094 0.906 48 H 0.096 0.904 49 H 0.092 0.908 50 H 0.093 0.907 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.933 -23.353 1.272 25.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.220 6.220 3 C 0.132 3.868 4 C -0.212 4.212 5 C -0.064 4.064 6 C -0.146 4.146 7 C 0.057 3.943 8 H 0.107 0.893 9 N -0.297 5.297 10 C -0.045 4.045 11 H 0.088 0.912 12 C -0.204 4.204 13 C 0.294 3.706 14 O -0.411 6.411 15 N -0.326 5.326 16 C -0.063 4.063 17 C 0.095 3.905 18 C -0.567 4.567 19 H 0.091 0.909 20 C -0.130 4.130 21 N -0.536 5.536 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.191 1.191 26 C -0.205 4.205 27 C -0.211 4.211 28 C -0.208 4.208 29 C 0.009 3.991 30 N -0.261 5.261 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.182 0.818 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.048 0.952 44 H 0.055 0.945 45 H 0.075 0.925 46 H 0.127 0.873 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.111 0.889 50 H 0.112 0.888 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.457 -23.912 0.814 25.061 hybrid contribution 0.261 1.206 0.158 1.244 sum 7.718 -22.706 0.972 24.001 Atomic orbital electron populations 1.22833 0.77308 1.02692 1.02613 1.86206 1.22877 1.24832 1.88079 1.19856 0.89420 0.84760 0.92802 1.20948 0.91976 0.99241 1.09001 1.21193 1.00135 0.90737 0.94363 1.20454 0.94805 0.95090 1.04232 1.19918 0.97240 0.88776 0.88386 0.89336 1.60568 1.08752 1.19639 1.40693 1.21415 0.94678 0.90053 0.98315 0.91158 1.21997 0.99908 1.01544 0.96988 1.20273 0.88664 0.83468 0.78218 1.90659 1.14967 1.82026 1.53458 1.47748 1.07054 1.14505 1.63262 1.21838 0.81370 1.03227 0.99865 1.19673 0.90778 0.83440 0.96610 1.21300 1.32040 1.05989 0.97371 0.90869 1.24860 0.95700 0.95973 0.96487 1.69895 1.40086 1.14201 1.29397 0.86845 0.80808 0.77678 0.84321 1.19873 1.21077 1.19053 1.23237 0.97333 1.04608 0.95275 1.23049 0.96410 0.97803 1.03879 1.22863 1.04011 0.95485 0.98443 1.22217 0.92476 0.93285 0.91149 1.67367 1.40854 0.98776 1.19062 0.92242 0.88843 0.92324 0.84401 0.84508 0.81756 0.91631 0.90856 0.92346 0.93180 0.90623 0.92004 0.95194 0.94505 0.92546 0.87312 0.88727 0.88544 0.88929 0.88834 0.82368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.38 101.05 1.05 1.40 16 2 O -0.31 -3.51 10.48 -18.74 -0.20 -3.71 16 3 C 0.31 3.72 7.49 -17.12 -0.13 3.59 16 4 C -0.19 -1.88 10.04 -39.28 -0.39 -2.28 16 5 C -0.04 -0.35 9.39 -39.31 -0.37 -0.72 16 6 C -0.14 -1.52 4.62 -104.48 -0.48 -2.00 16 7 C 0.17 1.74 2.24 -68.86 -0.15 1.59 16 8 H 0.09 0.82 6.76 -51.93 -0.35 0.47 16 9 N -0.66 -8.81 5.40 -102.16 -0.55 -9.36 16 10 C 0.07 0.96 2.03 -68.86 -0.14 0.81 16 11 H 0.07 0.91 6.88 -51.93 -0.36 0.55 16 12 C -0.15 -1.69 9.03 37.16 0.34 -1.35 16 13 C 0.51 9.90 7.10 -10.98 -0.08 9.83 16 14 O -0.53 -12.64 15.23 5.55 0.08 -12.56 16 15 N -0.59 -11.78 2.86 -182.96 -0.52 -12.30 16 16 C 0.08 1.17 8.80 59.85 0.53 1.70 16 17 C 0.22 5.19 4.23 -5.20 -0.02 5.17 16 18 C -0.53 -14.95 9.94 -34.44 -0.34 -15.30 16 19 H 0.07 2.27 8.06 -52.48 -0.42 1.85 16 20 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 21 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 22 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 26 C -0.18 -1.91 4.96 -90.62 -0.45 -2.36 16 27 C -0.17 -1.64 10.15 -26.69 -0.27 -1.91 16 28 C -0.17 -1.50 9.87 -26.69 -0.26 -1.77 16 29 C 0.16 2.03 10.48 -17.57 -0.18 1.84 16 30 N -0.54 -6.97 9.22 -13.33 -0.12 -7.10 16 31 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 34 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.36 5.45 6.42 -39.29 -0.25 5.20 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.76 4.53 -51.93 -0.24 0.53 16 39 H 0.06 0.55 7.43 -51.93 -0.39 0.17 16 40 H 0.05 0.60 6.95 -51.93 -0.36 0.24 16 41 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 42 H 0.06 0.74 6.01 -51.93 -0.31 0.43 16 43 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 44 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.11 1.29 7.93 -51.93 -0.41 0.88 16 47 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 48 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 49 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.09 0.73 7.71 -51.93 -0.40 0.33 16 51 H 0.16 1.95 7.26 -52.48 -0.38 1.57 16 LS Contribution 410.82 15.07 6.19 6.19 Total: -1.00 -34.33 410.82 -8.46 -42.78 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -7.98 Total: 5.70 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.46 Total: 0.24 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.42 Total: -55.43 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.11 Total: -16.27 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.33 -8.46 -42.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599694603.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.689 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds