Wall clock time and date at job start Wed Apr 1 2020 05:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35680 * 117.00175 * 2 1 4 4 C 1.38919 * 119.68386 * 180.02562 * 3 2 1 5 5 C 1.38378 * 119.11063 * 180.02562 * 4 3 2 6 6 C 1.38827 * 118.48362 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.35300 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47024 * 20.00411 * 7 6 5 9 9 N 1.46901 * 109.47352 * 140.00503 * 7 6 5 10 10 C 1.46902 * 110.99996 * 205.00378 * 9 7 6 11 11 H 1.08996 * 109.46856 * 324.99605 * 10 9 7 12 12 C 1.52998 * 109.47088 * 84.99665 * 10 9 7 13 13 C 1.50707 * 109.46674 * 204.99627 * 10 9 7 14 14 O 1.21283 * 119.99964 * 0.02562 * 13 10 9 15 15 N 1.34775 * 119.99844 * 179.97438 * 13 10 9 16 16 C 1.46503 * 119.99714 * 0.02562 * 15 13 10 17 17 C 1.46493 * 120.00276 * 179.97438 * 15 13 10 18 18 C 1.50699 * 109.46995 * 89.99808 * 17 15 13 19 19 H 1.08003 * 120.00357 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00383 * 180.02562 * 18 17 15 21 21 N 1.31512 * 120.00346 * 180.02562 * 20 18 17 22 22 Si 1.86808 * 119.99532 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47213 * 89.99896 * 22 20 18 24 24 H 1.48503 * 109.46811 * 210.00076 * 22 20 18 25 25 H 1.48504 * 109.47172 * 329.99326 * 22 20 18 26 26 C 1.53006 * 109.47152 * 260.00546 * 7 6 5 27 27 C 1.53000 * 117.49988 * 128.75099 * 26 7 6 28 28 C 1.52993 * 117.50097 * 60.08547 * 26 7 6 29 29 C 1.38045 * 119.29131 * 0.25962 * 6 5 4 30 30 N 1.31964 * 120.83492 * 359.44827 * 29 6 5 31 31 H 1.09004 * 109.47652 * 59.99449 * 1 2 3 32 32 H 1.09000 * 109.47662 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46790 * 300.00084 * 1 2 3 34 34 H 1.08003 * 120.44317 * 0.02562 * 4 3 2 35 35 H 1.08002 * 120.75466 * 180.02562 * 5 4 3 36 36 H 1.00896 * 110.99863 * 81.04244 * 9 7 6 37 37 H 1.08996 * 109.47321 * 60.00225 * 12 10 9 38 38 H 1.09004 * 109.46544 * 179.97438 * 12 10 9 39 39 H 1.08990 * 109.47363 * 299.99532 * 12 10 9 40 40 H 1.09004 * 109.46896 * 90.00302 * 16 15 13 41 41 H 1.08996 * 109.46864 * 209.99336 * 16 15 13 42 42 H 1.08998 * 109.47517 * 330.00038 * 16 15 13 43 43 H 1.08990 * 109.47534 * 210.00202 * 17 15 13 44 44 H 1.09002 * 109.46961 * 330.00451 * 17 15 13 45 45 H 0.97001 * 119.99495 * 180.02562 * 21 20 18 46 46 H 1.08998 * 115.54561 * 274.41439 * 26 7 6 47 47 H 1.09002 * 117.50034 * 359.97438 * 27 26 7 48 48 H 1.08994 * 117.49821 * 145.02184 * 27 26 7 49 49 H 1.08998 * 117.50372 * 214.98185 * 28 26 7 50 50 H 1.09006 * 117.50059 * 359.97438 * 28 26 7 51 51 H 1.08003 * 119.58047 * 179.72529 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2739 -0.0005 5 6 4.0485 2.5131 0.0000 6 6 3.2505 3.6490 0.0005 7 6 3.8769 5.0197 0.0017 8 1 4.9063 4.9490 -0.3495 9 7 3.1157 5.9068 -0.8881 10 6 3.9576 7.0038 -1.3838 11 1 4.6612 7.3015 -0.6064 12 6 4.7300 6.5359 -2.6188 13 6 3.0875 8.1784 -1.7506 14 8 1.8846 8.1086 -1.6121 15 7 3.6462 9.3067 -2.2314 16 6 5.0992 9.3911 -2.3981 17 6 2.8004 10.4483 -2.5885 18 6 2.6317 11.3434 -1.3879 19 1 3.1073 11.0877 -0.4526 20 6 1.8702 12.4888 -1.4835 21 7 1.7235 13.2702 -0.4359 22 14 1.0470 12.9307 -3.1011 23 1 -0.3076 12.3240 -3.1491 24 1 0.9323 14.4072 -3.2110 25 1 1.8619 12.4123 -4.2291 26 6 3.8607 5.5867 1.4228 27 6 5.1788 6.1233 1.9844 28 6 4.6058 4.8026 2.5048 29 6 1.8771 3.5096 0.0060 30 7 1.3186 2.3140 -0.0003 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 4.0228 0.3694 -0.0014 35 1 5.1255 2.5945 -0.0008 36 1 2.2926 6.2630 -0.4258 37 1 4.0263 6.2381 -3.3962 38 1 5.3543 7.3501 -2.9869 39 1 5.3592 5.6864 -2.3536 40 1 5.3710 9.0481 -3.3964 41 1 5.4202 10.4247 -2.2692 42 1 5.5876 8.7633 -1.6527 43 1 3.2693 11.0091 -3.3968 44 1 1.8240 10.0893 -2.9140 45 1 1.1874 14.0759 -0.5032 46 1 2.9438 6.0992 1.7139 47 1 6.0577 6.0721 1.3417 48 1 5.1291 6.9885 2.6454 49 1 4.1795 4.7995 3.5079 50 1 5.1073 3.8825 2.2044 51 1 1.2519 4.3902 0.0109 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599694603.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:44 Heat of formation + Delta-G solvation = -18.293372 kcal Electronic energy + Delta-G solvation = -31019.996548 eV Core-core repulsion = 26920.356508 eV Total energy + Delta-G solvation = -4099.640040 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.74012 -41.02478 -39.61474 -38.27416 -36.74084 -36.18312 -34.73068 -33.62033 -32.77147 -30.96545 -29.71206 -28.22698 -27.61693 -26.60953 -25.25667 -24.44398 -23.42786 -23.11057 -22.94720 -21.25359 -20.06371 -19.34087 -19.14693 -18.12876 -18.08297 -17.37383 -16.98479 -16.76418 -16.55453 -16.46537 -16.02282 -15.48123 -15.46619 -15.19877 -15.02970 -14.76900 -14.44599 -14.28322 -14.25966 -14.05249 -13.73107 -13.65804 -13.42470 -13.28789 -12.99286 -12.85602 -12.81885 -12.68696 -12.50363 -12.41181 -12.29279 -12.19409 -12.02809 -11.96260 -11.75189 -11.44496 -11.07676 -10.84231 -10.78750 -10.56693 -10.49296 -9.50390 -9.38005 -9.28135 -8.35160 -6.39886 0.22269 0.35528 1.31854 1.36141 1.44155 1.79053 2.19280 2.24424 2.29993 2.75228 2.88160 2.99592 3.13405 3.39116 3.60536 3.77005 3.85334 4.02580 4.04070 4.11711 4.16828 4.22976 4.27458 4.31020 4.41026 4.41385 4.45541 4.50082 4.61489 4.65074 4.74877 4.77014 4.79408 4.83040 4.86893 4.91056 4.96476 5.00121 5.03799 5.04303 5.17619 5.26066 5.35663 5.39256 5.45425 5.52516 5.60007 5.97202 6.21908 6.23219 6.27134 6.61142 6.70706 6.91548 7.20595 7.40194 8.81628 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014137 B = 0.002498 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.197529 B =11206.664342 C =11838.849379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.321 6.321 3 C 0.288 3.712 4 C -0.186 4.186 5 C -0.028 4.028 6 C -0.141 4.141 7 C 0.177 3.823 8 H 0.115 0.885 9 N -0.671 5.671 10 C 0.082 3.918 11 H 0.087 0.913 12 C -0.140 4.140 13 C 0.495 3.505 14 O -0.589 6.589 15 N -0.603 5.603 16 C 0.073 3.927 17 C 0.223 3.777 18 C -0.533 4.533 19 H 0.028 0.972 20 C 0.011 3.989 21 N -0.945 5.945 22 Si 0.947 3.053 23 H -0.279 1.279 24 H -0.275 1.275 25 H -0.237 1.237 26 C -0.201 4.201 27 C -0.172 4.172 28 C -0.157 4.157 29 C 0.141 3.859 30 N -0.562 5.562 31 H 0.049 0.951 32 H 0.123 0.877 33 H 0.051 0.949 34 H 0.164 0.836 35 H 0.177 0.823 36 H 0.343 0.657 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.091 0.909 43 H 0.051 0.949 44 H 0.016 0.984 45 H 0.268 0.732 46 H 0.080 0.920 47 H 0.116 0.884 48 H 0.084 0.916 49 H 0.088 0.912 50 H 0.114 0.886 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.218 -25.395 -0.435 28.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.229 6.229 3 C 0.109 3.891 4 C -0.206 4.206 5 C -0.053 4.053 6 C -0.144 4.144 7 C 0.067 3.933 8 H 0.133 0.867 9 N -0.304 5.304 10 C -0.031 4.031 11 H 0.105 0.895 12 C -0.198 4.198 13 C 0.284 3.716 14 O -0.470 6.470 15 N -0.334 5.334 16 C -0.069 4.069 17 C 0.101 3.899 18 C -0.571 4.571 19 H 0.047 0.953 20 C -0.187 4.187 21 N -0.585 5.585 22 Si 0.770 3.230 23 H -0.205 1.205 24 H -0.200 1.200 25 H -0.160 1.160 26 C -0.221 4.221 27 C -0.209 4.209 28 C -0.194 4.194 29 C -0.014 4.014 30 N -0.286 5.286 31 H 0.068 0.932 32 H 0.142 0.858 33 H 0.069 0.931 34 H 0.181 0.819 35 H 0.194 0.806 36 H 0.164 0.836 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.069 0.931 44 H 0.034 0.966 45 H 0.077 0.923 46 H 0.098 0.902 47 H 0.135 0.865 48 H 0.102 0.898 49 H 0.106 0.894 50 H 0.132 0.868 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.811 -25.973 -0.903 28.148 hybrid contribution -0.775 1.795 0.816 2.118 sum 10.036 -24.178 -0.088 26.178 Atomic orbital electron populations 1.22966 0.76443 1.04398 1.01762 1.86195 1.23835 1.24658 1.88177 1.20267 0.90567 0.84606 0.93621 1.21319 0.91149 1.00683 1.07487 1.21586 1.01803 0.89435 0.92515 1.20502 0.94075 0.95907 1.03928 1.19952 0.97842 0.87805 0.87715 0.86709 1.60660 1.08622 1.19500 1.41630 1.21431 0.93734 0.87930 0.99982 0.89534 1.22011 0.99591 1.03229 0.94926 1.21376 0.88754 0.84634 0.76862 1.90626 1.17704 1.83173 1.55490 1.47857 1.09036 1.13384 1.63095 1.22191 0.78064 1.03675 1.02972 1.19329 0.91177 0.84331 0.95106 1.21530 1.31436 1.06849 0.97308 0.95316 1.25841 0.96394 0.95896 1.00606 1.70047 1.41396 1.15027 1.32065 0.85732 0.79374 0.77776 0.80163 1.20466 1.20014 1.15998 1.23107 0.96934 1.05983 0.96085 1.23131 0.96260 0.97711 1.03781 1.22927 1.02855 0.96016 0.97630 1.22132 0.93570 0.92780 0.92948 1.67260 1.41989 0.99343 1.19986 0.93234 0.85843 0.93054 0.81865 0.80561 0.83562 0.93314 0.89282 0.89159 0.89615 0.91597 0.89015 0.93082 0.96611 0.92309 0.90185 0.86534 0.89779 0.89360 0.86774 0.84083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 10.38 113.37 1.18 1.86 16 2 O -0.32 -7.01 10.48 -89.98 -0.94 -7.95 16 3 C 0.29 6.70 7.49 84.79 0.63 7.34 16 4 C -0.19 -3.16 10.04 22.47 0.23 -2.93 16 5 C -0.03 -0.40 9.39 22.44 0.21 -0.19 16 6 C -0.14 -2.77 4.62 -19.77 -0.09 -2.87 16 7 C 0.18 3.33 2.24 44.17 0.10 3.43 16 8 H 0.12 1.57 6.76 -2.39 -0.02 1.56 16 9 N -0.67 -17.62 5.40 -477.14 -2.58 -20.20 16 10 C 0.08 2.15 2.03 44.17 0.09 2.24 16 11 H 0.09 2.00 6.88 -2.39 -0.02 1.98 16 12 C -0.14 -2.69 9.03 71.98 0.65 -2.04 16 13 C 0.50 19.47 7.10 87.66 0.62 20.09 16 14 O -0.59 -29.28 15.23 -3.04 -0.05 -29.33 16 15 N -0.60 -23.60 2.86 -851.15 -2.43 -26.03 16 16 C 0.07 1.91 8.80 127.77 1.12 3.03 16 17 C 0.22 10.77 4.23 85.63 0.36 11.13 16 18 C -0.53 -31.15 9.94 25.60 0.25 -30.89 16 19 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 20 C 0.01 0.63 5.47 84.66 0.46 1.09 16 21 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 22 Si 0.95 44.59 27.47 68.60 1.88 46.47 16 23 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 25 H -0.24 -9.97 6.54 99.48 0.65 -9.31 16 26 C -0.20 -4.01 4.96 -10.79 -0.05 -4.06 16 27 C -0.17 -2.86 10.15 30.62 0.31 -2.55 16 28 C -0.16 -2.42 9.87 30.62 0.30 -2.12 16 29 C 0.14 3.59 10.48 84.63 0.89 4.48 16 30 N -0.56 -15.01 9.22 -308.95 -2.85 -17.86 16 31 H 0.05 0.94 8.10 -2.38 -0.02 0.92 16 32 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 0.94 8.10 -2.39 -0.02 0.93 16 34 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.34 11.12 6.42 -89.70 -0.58 10.54 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.09 1.43 4.53 -2.38 -0.01 1.41 16 39 H 0.09 1.21 7.43 -2.39 -0.02 1.19 16 40 H 0.09 1.68 6.95 -2.38 -0.02 1.66 16 41 H 0.07 1.88 8.07 -2.39 -0.02 1.86 16 42 H 0.09 1.85 6.01 -2.39 -0.01 1.83 16 43 H 0.05 2.25 7.13 -2.39 -0.02 2.23 16 44 H 0.02 0.83 6.85 -2.39 -0.02 0.81 16 45 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 46 H 0.08 2.05 7.93 -2.39 -0.02 2.03 16 47 H 0.12 1.43 8.05 -2.39 -0.02 1.41 16 48 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 49 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.11 1.31 7.71 -2.38 -0.02 1.29 16 51 H 0.14 3.91 7.26 -2.91 -0.02 3.89 16 Total: -1.00 -81.07 410.82 0.92 -80.16 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.31 Total: 27.18 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 7.27 Total: 7.04 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -7.56 Total: -123.56 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -0.99 Total: -37.28 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal Total: -81.07 0.92 -80.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599694603.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.864 kcal (2) G-P(sol) polarization free energy of solvation -81.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds