Wall clock time and date at job start Wed Apr 1 2020 05:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35677 * 117.00324 * 2 1 4 4 C 1.38914 * 119.68468 * 179.97438 * 3 2 1 5 5 C 1.38378 * 119.11309 * 179.97438 * 4 3 2 6 6 C 1.38829 * 118.48149 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.34960 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47652 * 339.99567 * 7 6 5 9 9 N 1.46906 * 109.46790 * 219.99741 * 7 6 5 10 10 C 1.46895 * 110.99862 * 155.00298 * 9 7 6 11 11 H 1.09004 * 109.47459 * 35.00081 * 10 9 7 12 12 C 1.53001 * 109.47275 * 274.99966 * 10 9 7 13 13 C 1.50709 * 109.47265 * 154.99987 * 10 9 7 14 14 O 1.21281 * 119.99705 * 14.22683 * 13 10 9 15 15 N 1.34765 * 119.99838 * 194.23200 * 13 10 9 16 16 C 1.46502 * 120.00560 * 3.64243 * 15 13 10 17 17 C 1.46508 * 119.99732 * 183.64685 * 15 13 10 18 18 C 1.50697 * 109.47190 * 89.99979 * 17 15 13 19 19 H 1.07998 * 120.00397 * 359.97438 * 18 17 15 20 20 C 1.37879 * 119.99907 * 180.02562 * 18 17 15 21 21 N 1.31519 * 119.99771 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99994 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47425 * 59.99734 * 22 20 18 24 24 H 1.48505 * 109.47404 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47114 * 299.99707 * 22 20 18 26 26 C 1.53004 * 109.46984 * 100.00297 * 7 6 5 27 27 C 1.52995 * 117.50040 * 8.73680 * 26 7 6 28 28 C 1.52997 * 117.49361 * 300.07942 * 26 7 6 29 29 C 1.38042 * 119.29392 * 0.02562 * 6 5 4 30 30 N 1.31972 * 120.83029 * 359.97438 * 29 6 5 31 31 H 1.09002 * 109.46623 * 60.00235 * 1 2 3 32 32 H 1.08999 * 109.46962 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.46693 * 300.00575 * 1 2 3 34 34 H 1.08002 * 120.44401 * 359.97438 * 4 3 2 35 35 H 1.08004 * 120.75790 * 180.02562 * 5 4 3 36 36 H 1.00900 * 111.00221 * 31.04602 * 9 7 6 37 37 H 1.09000 * 109.46978 * 296.05604 * 12 10 9 38 38 H 1.08997 * 109.46845 * 56.05082 * 12 10 9 39 39 H 1.08998 * 109.47465 * 176.05339 * 12 10 9 40 40 H 1.08997 * 109.46720 * 84.66393 * 16 15 13 41 41 H 1.09002 * 109.47091 * 204.66132 * 16 15 13 42 42 H 1.08992 * 109.47121 * 324.66740 * 16 15 13 43 43 H 1.08999 * 109.47041 * 210.00033 * 17 15 13 44 44 H 1.09001 * 109.46813 * 329.99907 * 17 15 13 45 45 H 0.97005 * 119.99319 * 179.97438 * 21 20 18 46 46 H 1.09001 * 115.54790 * 154.41803 * 26 7 6 47 47 H 1.09004 * 117.49989 * 0.02562 * 27 26 7 48 48 H 1.09005 * 117.49872 * 145.02018 * 27 26 7 49 49 H 1.09008 * 117.50094 * 214.98059 * 28 26 7 50 50 H 1.08997 * 117.50118 * 0.02562 * 28 26 7 51 51 H 1.07996 * 119.58672 * 180.25967 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4327 1.2738 0.0005 5 6 4.0487 2.5130 0.0000 6 6 3.2506 3.6490 -0.0005 7 6 3.8771 5.0196 -0.0017 8 1 4.9066 4.9490 0.3495 9 7 3.1159 5.9066 0.8882 10 6 3.9578 7.0037 1.3838 11 1 4.6614 7.3015 0.6064 12 6 4.7303 6.5358 2.6188 13 6 3.0878 8.1783 1.7506 14 8 1.8888 8.0335 1.8618 15 7 3.6421 9.3896 1.9550 16 6 5.0787 9.5830 1.7429 17 6 2.8080 10.5130 2.3893 18 6 2.7684 10.5565 3.8951 19 1 3.3099 9.8208 4.4711 20 6 2.0399 11.5351 4.5376 21 7 1.3800 12.4308 3.8361 22 14 1.9902 11.5887 6.4041 23 1 3.3676 11.7625 6.9312 24 1 1.1438 12.7267 6.8444 25 1 1.4190 10.3189 6.9207 26 6 3.8607 5.5866 -1.4227 27 6 3.0721 4.8146 -2.4823 28 6 4.6025 4.8004 -2.5055 29 6 1.8773 3.5096 0.0000 30 7 1.3188 2.3139 0.0006 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5139 0.8899 34 1 4.0229 0.3693 0.0014 35 1 5.1256 2.5944 0.0000 36 1 2.7090 5.3892 1.6529 37 1 4.0285 6.3046 3.4202 38 1 5.3056 5.6439 2.3711 39 1 5.4069 7.3257 2.9450 40 1 5.2663 9.7851 0.6884 41 1 5.4241 10.4260 2.3414 42 1 5.6145 8.6819 2.0410 43 1 3.2273 11.4448 2.0098 44 1 1.7969 10.3855 2.0027 45 1 0.8672 13.1190 4.2882 46 1 3.8698 6.6742 -1.4950 47 1 2.5645 3.9029 -2.1670 48 1 2.5624 5.3943 -3.2520 49 1 5.0992 5.3706 -3.2906 50 1 5.1018 3.8790 -2.2056 51 1 1.2520 4.3902 -0.0046 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599694604.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:48 Heat of formation + Delta-G solvation = 6.222020 kcal Electronic energy + Delta-G solvation = -31031.450212 eV Core-core repulsion = 26932.873239 eV Total energy + Delta-G solvation = -4098.576973 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.12866 -39.49984 -38.70600 -37.25545 -35.45823 -34.68296 -32.87868 -32.59026 -31.69342 -29.51386 -27.72995 -27.40310 -26.05480 -25.69328 -24.02030 -23.65169 -22.98040 -22.27825 -21.83725 -19.78177 -18.61761 -18.50699 -17.26601 -17.01039 -16.47471 -16.32152 -15.88194 -15.61352 -15.33959 -14.86017 -14.74579 -14.53902 -14.37660 -14.18667 -14.00295 -13.58440 -13.38076 -13.28093 -13.21978 -12.85648 -12.46347 -12.23939 -12.10844 -12.04195 -11.92364 -11.70298 -11.59668 -11.29010 -11.27558 -11.23602 -11.12813 -10.86181 -10.53282 -10.46084 -10.19306 -10.13350 -10.11525 -9.77705 -9.61316 -8.90566 -8.60915 -8.41370 -8.25252 -7.56256 -6.02147 -4.07084 0.91648 1.00113 2.84946 3.32009 3.36908 3.38732 3.47039 3.52175 3.55710 3.89480 4.12003 4.31673 4.39855 4.46712 4.70204 4.72965 4.78641 4.87970 4.94141 4.99164 5.04055 5.07533 5.08620 5.17682 5.22948 5.31923 5.34409 5.39302 5.43150 5.51075 5.52925 5.58116 5.67717 5.74952 5.79820 5.83205 5.93876 5.99237 6.02231 6.11257 6.12021 6.23616 6.29840 6.85552 6.98713 7.15973 7.36738 7.50435 7.60353 7.65619 7.95015 8.26384 8.50184 8.93404 9.20438 9.58130 11.05728 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.002477 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.977723 B =11302.490041 C =12307.208895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.311 6.311 3 C 0.315 3.685 4 C -0.193 4.193 5 C -0.036 4.036 6 C -0.176 4.176 7 C 0.169 3.831 8 H 0.059 0.941 9 N -0.657 5.657 10 C 0.068 3.932 11 H 0.095 0.905 12 C -0.180 4.180 13 C 0.514 3.486 14 O -0.525 6.525 15 N -0.605 5.605 16 C 0.078 3.922 17 C 0.247 3.753 18 C -0.526 4.526 19 H 0.055 0.945 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 C -0.132 4.132 27 C -0.175 4.175 28 C -0.181 4.181 29 C 0.167 3.833 30 N -0.538 5.538 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.352 0.648 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.042 0.958 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.030 0.970 44 H 0.044 0.956 45 H 0.264 0.736 46 H 0.112 0.888 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.093 0.907 50 H 0.089 0.911 51 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.100 -21.733 -11.343 26.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.218 6.218 3 C 0.137 3.863 4 C -0.214 4.214 5 C -0.062 4.062 6 C -0.179 4.179 7 C 0.059 3.941 8 H 0.077 0.923 9 N -0.289 5.289 10 C -0.045 4.045 11 H 0.113 0.887 12 C -0.239 4.239 13 C 0.299 3.701 14 O -0.400 6.400 15 N -0.338 5.338 16 C -0.066 4.066 17 C 0.127 3.873 18 C -0.565 4.565 19 H 0.074 0.926 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.151 4.151 27 C -0.212 4.212 28 C -0.219 4.219 29 C 0.011 3.989 30 N -0.261 5.261 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.172 0.828 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.060 0.940 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.048 0.952 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.130 0.870 47 H 0.111 0.889 48 H 0.110 0.890 49 H 0.111 0.889 50 H 0.108 0.892 51 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 7.224 -21.611 -11.765 25.644 hybrid contribution 1.241 -0.106 1.703 2.110 sum 8.465 -21.717 -10.061 25.387 Atomic orbital electron populations 1.22863 0.77106 1.02832 1.02718 1.86217 1.23043 1.24728 1.87841 1.19918 0.89438 0.84880 0.92078 1.20980 0.92028 0.99317 1.09045 1.21273 1.00312 0.90735 0.93844 1.20687 0.95192 0.95563 1.06411 1.19773 0.95145 0.86748 0.92421 0.92300 1.60148 1.33386 1.12025 1.23364 1.21550 0.93912 0.92076 0.96992 0.88661 1.22481 1.01152 1.01815 0.98447 1.20055 0.88524 0.83435 0.78084 1.90656 1.15063 1.83698 1.50613 1.48107 1.08350 1.11043 1.66345 1.21765 0.82616 1.02188 1.00074 1.19259 0.91098 0.82245 0.94667 1.21399 1.30546 1.12952 0.91586 0.92628 1.24937 0.95171 0.95480 0.98528 1.69929 1.31574 1.16291 1.35550 0.86580 0.77912 0.77610 0.85421 1.20306 1.21181 1.20216 1.22263 1.04742 0.98751 0.89362 1.23054 0.93778 1.02562 1.01813 1.22949 0.95027 1.02258 1.01666 1.22518 0.92529 0.93652 0.90225 1.67457 1.40724 0.98712 1.19172 0.92221 0.88738 0.92124 0.84258 0.84302 0.82754 0.91599 0.92275 0.90635 0.93979 0.90721 0.92312 0.95169 0.93783 0.92682 0.86991 0.88935 0.89008 0.88856 0.89214 0.81097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.38 101.05 1.05 1.38 16 2 O -0.31 -3.34 10.48 -18.73 -0.20 -3.54 16 3 C 0.32 3.57 7.49 -17.13 -0.13 3.44 16 4 C -0.19 -1.79 10.04 -39.28 -0.39 -2.18 16 5 C -0.04 -0.30 9.37 -39.31 -0.37 -0.67 16 6 C -0.18 -1.75 3.18 -104.47 -0.33 -2.08 16 7 C 0.17 1.71 2.43 -68.86 -0.17 1.55 16 8 H 0.06 0.53 6.99 -51.93 -0.36 0.17 16 9 N -0.66 -8.67 4.99 -102.16 -0.51 -9.18 16 10 C 0.07 0.96 1.98 -68.86 -0.14 0.82 16 11 H 0.10 1.17 6.80 -51.93 -0.35 0.82 16 12 C -0.18 -2.21 8.89 37.16 0.33 -1.87 16 13 C 0.51 10.45 6.97 -10.99 -0.08 10.37 16 14 O -0.52 -13.16 16.05 5.56 0.09 -13.07 16 15 N -0.61 -12.63 2.86 -182.95 -0.52 -13.16 16 16 C 0.08 1.20 9.85 59.85 0.59 1.78 16 17 C 0.25 6.46 5.16 -5.19 -0.03 6.44 16 18 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 19 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 22 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 C -0.13 -1.35 5.72 -90.62 -0.52 -1.87 16 27 C -0.18 -1.75 9.50 -26.70 -0.25 -2.01 16 28 C -0.18 -1.54 10.02 -26.70 -0.27 -1.81 16 29 C 0.17 1.94 8.40 -17.56 -0.15 1.79 16 30 N -0.54 -6.57 9.22 -13.33 -0.12 -6.70 16 31 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.35 4.82 7.75 -39.29 -0.30 4.52 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.57 7.38 -51.93 -0.38 0.18 16 39 H 0.07 0.91 5.83 -51.93 -0.30 0.61 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 1.19 8.03 -51.93 -0.42 0.77 16 42 H 0.06 0.73 4.58 -51.93 -0.24 0.50 16 43 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 44 H 0.04 1.31 7.37 -51.93 -0.38 0.93 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.11 1.29 7.94 -51.93 -0.41 0.88 16 47 H 0.09 1.00 5.41 -51.93 -0.28 0.72 16 48 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 50 H 0.09 0.69 7.70 -51.93 -0.40 0.29 16 51 H 0.17 2.14 7.72 -52.49 -0.41 1.73 16 LS Contribution 412.70 15.07 6.22 6.22 Total: -1.00 -33.92 412.70 -8.60 -42.52 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -8.01 Total: 4.48 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -1.27 Total: 1.55 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.42 Total: -55.01 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.11 Total: -16.60 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.92 -8.60 -42.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599694604.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.744 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds