Wall clock time and date at job start Wed Apr 1 2020 05:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35677 * 117.00324 * 2 1 4 4 C 1.38914 * 119.68468 * 179.97438 * 3 2 1 5 5 C 1.38378 * 119.11309 * 179.97438 * 4 3 2 6 6 C 1.38829 * 118.48149 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.34960 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47652 * 339.99567 * 7 6 5 9 9 N 1.46906 * 109.46790 * 219.99741 * 7 6 5 10 10 C 1.46895 * 110.99862 * 155.00298 * 9 7 6 11 11 H 1.09004 * 109.47459 * 35.00081 * 10 9 7 12 12 C 1.53001 * 109.47275 * 274.99966 * 10 9 7 13 13 C 1.50709 * 109.47265 * 154.99987 * 10 9 7 14 14 O 1.21281 * 119.99705 * 14.22683 * 13 10 9 15 15 N 1.34765 * 119.99838 * 194.23200 * 13 10 9 16 16 C 1.46502 * 120.00560 * 3.64243 * 15 13 10 17 17 C 1.46508 * 119.99732 * 183.64685 * 15 13 10 18 18 C 1.50697 * 109.47190 * 89.99979 * 17 15 13 19 19 H 1.07998 * 120.00397 * 359.97438 * 18 17 15 20 20 C 1.37879 * 119.99907 * 180.02562 * 18 17 15 21 21 N 1.31519 * 119.99771 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99994 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47425 * 59.99734 * 22 20 18 24 24 H 1.48505 * 109.47404 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47114 * 299.99707 * 22 20 18 26 26 C 1.53004 * 109.46984 * 100.00297 * 7 6 5 27 27 C 1.52995 * 117.50040 * 8.73680 * 26 7 6 28 28 C 1.52997 * 117.49361 * 300.07942 * 26 7 6 29 29 C 1.38042 * 119.29392 * 0.02562 * 6 5 4 30 30 N 1.31972 * 120.83029 * 359.97438 * 29 6 5 31 31 H 1.09002 * 109.46623 * 60.00235 * 1 2 3 32 32 H 1.08999 * 109.46962 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.46693 * 300.00575 * 1 2 3 34 34 H 1.08002 * 120.44401 * 359.97438 * 4 3 2 35 35 H 1.08004 * 120.75790 * 180.02562 * 5 4 3 36 36 H 1.00900 * 111.00221 * 31.04602 * 9 7 6 37 37 H 1.09000 * 109.46978 * 296.05604 * 12 10 9 38 38 H 1.08997 * 109.46845 * 56.05082 * 12 10 9 39 39 H 1.08998 * 109.47465 * 176.05339 * 12 10 9 40 40 H 1.08997 * 109.46720 * 84.66393 * 16 15 13 41 41 H 1.09002 * 109.47091 * 204.66132 * 16 15 13 42 42 H 1.08992 * 109.47121 * 324.66740 * 16 15 13 43 43 H 1.08999 * 109.47041 * 210.00033 * 17 15 13 44 44 H 1.09001 * 109.46813 * 329.99907 * 17 15 13 45 45 H 0.97005 * 119.99319 * 179.97438 * 21 20 18 46 46 H 1.09001 * 115.54790 * 154.41803 * 26 7 6 47 47 H 1.09004 * 117.49989 * 0.02562 * 27 26 7 48 48 H 1.09005 * 117.49872 * 145.02018 * 27 26 7 49 49 H 1.09008 * 117.50094 * 214.98059 * 28 26 7 50 50 H 1.08997 * 117.50118 * 0.02562 * 28 26 7 51 51 H 1.07996 * 119.58672 * 180.25967 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4327 1.2738 0.0005 5 6 4.0487 2.5130 0.0000 6 6 3.2506 3.6490 -0.0005 7 6 3.8771 5.0196 -0.0017 8 1 4.9066 4.9490 0.3495 9 7 3.1159 5.9066 0.8882 10 6 3.9578 7.0037 1.3838 11 1 4.6614 7.3015 0.6064 12 6 4.7303 6.5358 2.6188 13 6 3.0878 8.1783 1.7506 14 8 1.8888 8.0335 1.8618 15 7 3.6421 9.3896 1.9550 16 6 5.0787 9.5830 1.7429 17 6 2.8080 10.5130 2.3893 18 6 2.7684 10.5565 3.8951 19 1 3.3099 9.8208 4.4711 20 6 2.0399 11.5351 4.5376 21 7 1.3800 12.4308 3.8361 22 14 1.9902 11.5887 6.4041 23 1 3.3676 11.7625 6.9312 24 1 1.1438 12.7267 6.8444 25 1 1.4190 10.3189 6.9207 26 6 3.8607 5.5866 -1.4227 27 6 3.0721 4.8146 -2.4823 28 6 4.6025 4.8004 -2.5055 29 6 1.8773 3.5096 0.0000 30 7 1.3188 2.3139 0.0006 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5139 0.8899 34 1 4.0229 0.3693 0.0014 35 1 5.1256 2.5944 0.0000 36 1 2.7090 5.3892 1.6529 37 1 4.0285 6.3046 3.4202 38 1 5.3056 5.6439 2.3711 39 1 5.4069 7.3257 2.9450 40 1 5.2663 9.7851 0.6884 41 1 5.4241 10.4260 2.3414 42 1 5.6145 8.6819 2.0410 43 1 3.2273 11.4448 2.0098 44 1 1.7969 10.3855 2.0027 45 1 0.8672 13.1190 4.2882 46 1 3.8698 6.6742 -1.4950 47 1 2.5645 3.9029 -2.1670 48 1 2.5624 5.3943 -3.2520 49 1 5.0992 5.3706 -3.2906 50 1 5.1018 3.8790 -2.2056 51 1 1.2520 4.3902 -0.0046 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599694604.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:47 Heat of formation + Delta-G solvation = -18.201200 kcal Electronic energy + Delta-G solvation = -31032.509282 eV Core-core repulsion = 26932.873239 eV Total energy + Delta-G solvation = -4099.636043 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.91831 -40.81169 -39.71143 -38.07891 -36.64214 -36.32829 -34.69760 -33.61045 -32.62654 -30.58506 -29.45536 -28.18515 -27.41242 -26.67963 -25.63658 -24.51616 -23.82832 -23.34184 -22.94217 -20.60599 -19.96734 -19.36555 -18.64181 -18.25163 -18.07730 -17.24791 -17.06559 -16.62971 -16.59032 -16.25905 -16.02247 -15.63705 -15.44882 -15.05749 -14.97706 -14.73462 -14.38866 -14.25172 -14.17197 -14.09887 -13.93456 -13.51070 -13.32562 -13.20862 -13.11775 -12.99270 -12.78217 -12.63198 -12.43701 -12.42672 -12.38512 -12.18800 -12.09252 -11.99367 -11.69068 -11.21401 -10.94464 -10.85949 -10.63270 -10.58646 -10.42298 -9.39212 -9.33360 -9.30048 -8.20586 -6.35889 0.13094 0.28101 1.36294 1.40900 1.48019 1.96168 2.14884 2.28079 2.42976 2.73916 2.88776 3.08392 3.28240 3.37960 3.60572 3.75348 3.94813 4.00441 4.06760 4.11598 4.15963 4.19830 4.23745 4.25517 4.39692 4.41012 4.44600 4.62341 4.64475 4.69991 4.73641 4.76191 4.79723 4.82710 4.85562 4.93703 4.97098 5.04174 5.09685 5.23847 5.27165 5.27898 5.30285 5.35011 5.48772 5.58977 5.86763 6.01673 6.08950 6.22225 6.35202 6.73093 6.85740 6.90214 7.30990 7.61905 8.86019 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.002477 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.977723 B =11302.490041 C =12307.208895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.320 6.320 3 C 0.294 3.706 4 C -0.188 4.188 5 C -0.025 4.025 6 C -0.170 4.170 7 C 0.177 3.823 8 H 0.089 0.911 9 N -0.676 5.676 10 C 0.086 3.914 11 H 0.124 0.876 12 C -0.174 4.174 13 C 0.501 3.499 14 O -0.587 6.587 15 N -0.613 5.613 16 C 0.072 3.928 17 C 0.260 3.740 18 C -0.540 4.540 19 H 0.055 0.945 20 C 0.005 3.995 21 N -0.930 5.930 22 Si 0.967 3.033 23 H -0.258 1.258 24 H -0.280 1.280 25 H -0.278 1.278 26 C -0.143 4.143 27 C -0.191 4.191 28 C -0.154 4.154 29 C 0.149 3.851 30 N -0.561 5.561 31 H 0.052 0.948 32 H 0.123 0.877 33 H 0.050 0.950 34 H 0.164 0.836 35 H 0.178 0.822 36 H 0.346 0.654 37 H 0.042 0.958 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.020 0.980 44 H -0.007 1.007 45 H 0.266 0.734 46 H 0.097 0.903 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.104 0.896 50 H 0.107 0.893 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.018 -23.848 -11.051 29.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.227 6.227 3 C 0.116 3.884 4 C -0.208 4.208 5 C -0.050 4.050 6 C -0.173 4.173 7 C 0.068 3.932 8 H 0.106 0.894 9 N -0.308 5.308 10 C -0.027 4.027 11 H 0.142 0.858 12 C -0.232 4.232 13 C 0.290 3.710 14 O -0.467 6.467 15 N -0.345 5.345 16 C -0.070 4.070 17 C 0.139 3.861 18 C -0.578 4.578 19 H 0.073 0.927 20 C -0.194 4.194 21 N -0.570 5.570 22 Si 0.791 3.209 23 H -0.182 1.182 24 H -0.205 1.205 25 H -0.204 1.204 26 C -0.162 4.162 27 C -0.228 4.228 28 C -0.191 4.191 29 C -0.006 4.006 30 N -0.285 5.285 31 H 0.071 0.929 32 H 0.141 0.859 33 H 0.068 0.932 34 H 0.181 0.819 35 H 0.195 0.805 36 H 0.166 0.834 37 H 0.061 0.939 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.114 0.886 43 H 0.038 0.962 44 H 0.011 0.989 45 H 0.075 0.925 46 H 0.115 0.885 47 H 0.101 0.899 48 H 0.102 0.898 49 H 0.122 0.878 50 H 0.126 0.874 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 11.203 -23.733 -11.497 28.652 hybrid contribution -0.048 0.537 1.519 1.612 sum 11.155 -23.196 -9.977 27.605 Atomic orbital electron populations 1.22986 0.76304 1.04465 1.01868 1.86205 1.23940 1.24639 1.87965 1.20302 0.90542 0.84684 0.92919 1.21332 0.91192 1.00723 1.07587 1.21642 1.01902 0.89434 0.92039 1.20653 0.94359 0.96202 1.06048 1.19821 0.95947 0.85934 0.91519 0.89373 1.60024 1.34503 1.12673 1.23625 1.21399 0.92832 0.89672 0.98788 0.85788 1.22458 1.00631 1.03598 0.96539 1.21339 0.88625 0.84587 0.76486 1.90620 1.18134 1.84715 1.53196 1.48135 1.10293 1.10048 1.66032 1.22073 0.79250 1.03843 1.01821 1.18700 0.89643 0.83937 0.93859 1.21682 1.30641 1.12913 0.92580 0.92674 1.25891 0.94608 0.95023 1.03842 1.70063 1.32276 1.16976 1.37694 0.85476 0.78864 0.77471 0.79043 1.18232 1.20507 1.20378 1.22228 1.05982 0.98096 0.89861 1.23015 0.95431 1.02268 1.02064 1.23032 0.93415 1.02313 1.00367 1.22281 0.93481 0.92927 0.91941 1.67336 1.41855 0.99265 1.20051 0.92904 0.85855 0.93158 0.81863 0.80476 0.83372 0.93889 0.88264 0.90103 0.91298 0.91509 0.88561 0.96175 0.98876 0.92477 0.88498 0.89891 0.89800 0.87776 0.87420 0.83401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.38 113.37 1.18 1.82 16 2 O -0.32 -6.67 10.48 -89.94 -0.94 -7.62 16 3 C 0.29 6.44 7.49 84.79 0.63 7.08 16 4 C -0.19 -2.96 10.04 22.47 0.23 -2.73 16 5 C -0.02 -0.32 9.37 22.44 0.21 -0.11 16 6 C -0.17 -3.05 3.18 -19.77 -0.06 -3.11 16 7 C 0.18 3.12 2.43 44.17 0.11 3.22 16 8 H 0.09 1.09 6.99 -2.39 -0.02 1.07 16 9 N -0.68 -17.34 4.99 -477.12 -2.38 -19.72 16 10 C 0.09 2.28 1.98 44.17 0.09 2.36 16 11 H 0.12 2.58 6.80 -2.38 -0.02 2.56 16 12 C -0.17 -3.69 8.89 71.98 0.64 -3.05 16 13 C 0.50 20.79 6.97 87.66 0.61 21.40 16 14 O -0.59 -31.22 16.05 -3.03 -0.05 -31.27 16 15 N -0.61 -25.93 2.86 -851.13 -2.43 -28.36 16 16 C 0.07 2.07 9.85 127.77 1.26 3.33 16 17 C 0.26 14.32 5.16 85.63 0.44 14.77 16 18 C -0.54 -31.32 9.39 25.60 0.24 -31.07 16 19 H 0.06 3.13 7.81 -2.91 -0.02 3.10 16 20 C 0.01 0.30 5.46 84.65 0.46 0.76 16 21 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 22 Si 0.97 45.22 29.54 68.60 2.03 47.24 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 26 C -0.14 -2.63 5.72 -10.80 -0.06 -2.70 16 27 C -0.19 -3.67 9.50 30.62 0.29 -3.38 16 28 C -0.15 -2.10 10.02 30.62 0.31 -1.79 16 29 C 0.15 3.57 8.40 84.63 0.71 4.28 16 30 N -0.56 -14.13 9.22 -308.96 -2.85 -16.98 16 31 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 32 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 34 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 35 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 36 H 0.35 9.54 7.75 -89.69 -0.69 8.84 16 37 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.10 1.36 7.38 -2.39 -0.02 1.34 16 39 H 0.08 1.63 5.83 -2.39 -0.01 1.62 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.07 2.04 8.03 -2.39 -0.02 2.02 16 42 H 0.10 2.04 4.58 -2.39 -0.01 2.03 16 43 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 44 H -0.01 -0.44 7.37 -2.39 -0.02 -0.46 16 45 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 46 H 0.10 2.11 7.94 -2.39 -0.02 2.09 16 47 H 0.08 1.78 5.41 -2.39 -0.01 1.76 16 48 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 49 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 50 H 0.11 1.11 7.70 -2.39 -0.02 1.09 16 51 H 0.15 4.10 7.72 -2.91 -0.02 4.08 16 Total: -1.00 -80.36 412.70 1.19 -79.17 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.25 Total: 23.45 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 7.28 Total: 11.07 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -7.37 Total: -122.05 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -0.99 Total: -38.89 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -80.36 1.19 -79.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599694604.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.967 kcal (2) G-P(sol) polarization free energy of solvation -80.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds