Wall clock time and date at job start Wed Apr 1 2020 05:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 117.00042 * 2 1 4 4 C 1.38924 * 119.68568 * 180.02562 * 3 2 1 5 5 C 1.38375 * 119.11147 * 180.02562 * 4 3 2 6 6 C 1.38836 * 118.48653 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.35575 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47107 * 19.99554 * 7 6 5 9 9 N 1.46898 * 109.47301 * 139.99889 * 7 6 5 10 10 C 1.46891 * 111.00131 * 204.99647 * 9 7 6 11 11 H 1.09009 * 109.47292 * 35.00481 * 10 9 7 12 12 C 1.53001 * 109.47868 * 275.00398 * 10 9 7 13 13 C 1.50702 * 109.47259 * 154.99985 * 10 9 7 14 14 O 1.21283 * 119.99478 * 0.02562 * 13 10 9 15 15 N 1.34773 * 120.00430 * 179.97438 * 13 10 9 16 16 C 1.46506 * 119.99969 * 0.02562 * 15 13 10 17 17 C 1.46499 * 120.00036 * 179.72648 * 15 13 10 18 18 C 1.50703 * 109.47126 * 270.27831 * 17 15 13 19 19 H 1.08002 * 119.99820 * 359.97438 * 18 17 15 20 20 C 1.37876 * 119.99889 * 180.02562 * 18 17 15 21 21 N 1.31518 * 120.00192 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00045 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46767 * 89.99886 * 22 20 18 24 24 H 1.48493 * 109.47240 * 210.00027 * 22 20 18 25 25 H 1.48500 * 109.46974 * 329.99973 * 22 20 18 26 26 C 1.53006 * 109.46955 * 260.00386 * 7 6 5 27 27 C 1.53003 * 117.50007 * 128.74892 * 26 7 6 28 28 C 1.52992 * 117.49931 * 60.08507 * 26 7 6 29 29 C 1.38042 * 119.28724 * 0.25711 * 6 5 4 30 30 N 1.31971 * 120.83573 * 359.44878 * 29 6 5 31 31 H 1.08999 * 109.46673 * 299.99823 * 1 2 3 32 32 H 1.08996 * 109.47233 * 60.00062 * 1 2 3 33 33 H 1.09009 * 109.46868 * 180.02562 * 1 2 3 34 34 H 1.08001 * 120.44010 * 0.02562 * 4 3 2 35 35 H 1.08000 * 120.75926 * 179.97438 * 5 4 3 36 36 H 1.00909 * 110.99507 * 81.04528 * 9 7 6 37 37 H 1.08998 * 109.46762 * 59.99490 * 12 10 9 38 38 H 1.08994 * 109.47722 * 180.02562 * 12 10 9 39 39 H 1.09009 * 109.46732 * 300.00426 * 12 10 9 40 40 H 1.08999 * 109.46892 * 269.72362 * 16 15 13 41 41 H 1.09000 * 109.46803 * 29.71536 * 16 15 13 42 42 H 1.09000 * 109.47214 * 149.72329 * 16 15 13 43 43 H 1.08994 * 109.47173 * 30.28203 * 17 15 13 44 44 H 1.09005 * 109.47077 * 150.28374 * 17 15 13 45 45 H 0.96995 * 119.99689 * 179.97438 * 21 20 18 46 46 H 1.08998 * 115.54614 * 274.41131 * 26 7 6 47 47 H 1.08996 * 117.49775 * 359.97438 * 27 26 7 48 48 H 1.08998 * 117.49566 * 145.01687 * 27 26 7 49 49 H 1.09007 * 117.50004 * 214.97553 * 28 26 7 50 50 H 1.08998 * 117.50690 * 359.97438 * 28 26 7 51 51 H 1.08002 * 119.58431 * 179.72135 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 -0.0005 5 6 4.0485 2.5131 0.0000 6 6 3.2505 3.6492 0.0005 7 6 3.8768 5.0198 0.0017 8 1 4.9063 4.9491 -0.3494 9 7 3.1156 5.9067 -0.8882 10 6 3.9574 7.0038 -1.3837 11 1 4.9751 6.6425 -1.5319 12 6 3.9644 8.1429 -0.3623 13 6 3.4073 7.5069 -2.6934 14 8 2.4117 7.0016 -3.1671 15 7 4.0211 8.5191 -3.3379 16 6 5.2234 9.1299 -2.7654 17 6 3.4897 9.0041 -4.6140 18 6 4.1160 8.2304 -5.7455 19 1 4.8380 7.4552 -5.5350 20 6 3.7681 8.5129 -7.0494 21 7 2.8893 9.4572 -7.3057 22 14 4.5449 7.5543 -8.4520 23 1 3.7175 6.3582 -8.7520 24 1 4.6230 8.4174 -9.6579 25 1 5.9118 7.1253 -8.0610 26 6 3.8605 5.5867 1.4228 27 6 5.1786 6.1233 1.9845 28 6 4.6056 4.8026 2.5047 29 6 1.8771 3.5097 0.0059 30 7 1.3186 2.3140 -0.0004 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0278 0.0005 34 1 4.0229 0.3695 -0.0014 35 1 5.1255 2.5947 0.0000 36 1 2.2925 6.2630 -0.4258 37 1 4.3623 7.7790 0.5850 38 1 4.5886 8.9571 -0.7302 39 1 2.9467 8.5042 -0.2140 40 1 4.9370 9.9613 -2.1213 41 1 5.7650 8.3867 -2.1802 42 1 5.8626 9.4961 -3.5688 43 1 2.4088 8.8656 -4.6337 44 1 3.7225 10.0631 -4.7255 45 1 2.6449 9.6561 -8.2231 46 1 2.9436 6.0992 1.7139 47 1 6.0574 6.0721 1.3418 48 1 5.1288 6.9886 2.6455 49 1 4.1792 4.7996 3.5080 50 1 5.1072 3.8826 2.2045 51 1 1.2518 4.3902 0.0109 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599694605.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:52 Heat of formation + Delta-G solvation = 7.404415 kcal Electronic energy + Delta-G solvation = -31031.046141 eV Core-core repulsion = 26932.520440 eV Total energy + Delta-G solvation = -4098.525700 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.86119 -39.58991 -38.57573 -37.48596 -35.23403 -34.72265 -32.90667 -32.55182 -31.75488 -29.47734 -27.67603 -27.22226 -26.12515 -25.50223 -24.11913 -23.43462 -22.71701 -22.41216 -21.73018 -20.64871 -18.55040 -18.46670 -17.14842 -16.82222 -16.41611 -16.16366 -16.04445 -15.63647 -15.03200 -15.02688 -14.65156 -14.50861 -14.47111 -14.28591 -13.66181 -13.60667 -13.47025 -13.17556 -12.91338 -12.84001 -12.34805 -12.28075 -12.12978 -12.04361 -11.93478 -11.82218 -11.64667 -11.41469 -11.27998 -11.14148 -11.10379 -10.83179 -10.70201 -10.53821 -10.31179 -10.11442 -9.94714 -9.65075 -9.58087 -8.85478 -8.45959 -8.39823 -8.23622 -7.55998 -6.00685 -4.05065 1.10979 1.18824 2.98945 3.33885 3.39995 3.41203 3.45600 3.55386 3.62993 3.77152 4.25582 4.29236 4.45951 4.49031 4.59037 4.70969 4.81901 4.83584 4.96109 5.06637 5.07987 5.09156 5.16305 5.18737 5.21990 5.29021 5.33711 5.35803 5.38905 5.48380 5.54877 5.59248 5.65430 5.76791 5.79923 5.80547 5.83194 5.86224 5.93268 6.07541 6.20710 6.28360 6.33009 6.86287 7.12234 7.16285 7.34946 7.49468 7.61153 7.80870 7.96506 8.27963 8.50615 8.95746 9.22408 9.60234 11.07332 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009785 B = 0.002893 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.837242 B = 9676.093917 C =11607.244940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.312 6.312 3 C 0.312 3.688 4 C -0.191 4.191 5 C -0.038 4.038 6 C -0.145 4.145 7 C 0.169 3.831 8 H 0.089 0.911 9 N -0.652 5.652 10 C 0.073 3.927 11 H 0.096 0.904 12 C -0.197 4.197 13 C 0.509 3.491 14 O -0.521 6.521 15 N -0.606 5.606 16 C 0.084 3.916 17 C 0.247 3.753 18 C -0.524 4.524 19 H 0.056 0.944 20 C 0.060 3.940 21 N -0.896 5.896 22 Si 0.897 3.103 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.275 1.275 26 C -0.179 4.179 27 C -0.175 4.175 28 C -0.172 4.172 29 C 0.166 3.834 30 N -0.538 5.538 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.348 0.652 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.045 0.955 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.031 0.969 45 H 0.263 0.737 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.094 0.906 49 H 0.091 0.909 50 H 0.094 0.906 51 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.103 -10.464 22.996 25.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.220 6.220 3 C 0.133 3.867 4 C -0.211 4.211 5 C -0.064 4.064 6 C -0.148 4.148 7 C 0.058 3.942 8 H 0.107 0.893 9 N -0.282 5.282 10 C -0.040 4.040 11 H 0.113 0.887 12 C -0.256 4.256 13 C 0.293 3.707 14 O -0.396 6.396 15 N -0.339 5.339 16 C -0.061 4.061 17 C 0.128 3.872 18 C -0.563 4.563 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.725 3.275 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.199 4.199 27 C -0.212 4.212 28 C -0.210 4.210 29 C 0.010 3.990 30 N -0.261 5.261 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.168 0.832 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.072 0.928 46 H 0.125 0.875 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.110 0.890 50 H 0.113 0.887 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.726 -11.371 21.977 24.894 hybrid contribution 1.183 0.317 -0.119 1.231 sum 3.909 -11.053 21.857 24.803 Atomic orbital electron populations 1.22833 0.77338 1.02684 1.02579 1.86208 1.22861 1.24823 1.88061 1.19838 0.89412 0.84737 0.92727 1.20951 0.91998 0.99271 1.08899 1.21197 1.00164 0.90788 0.94208 1.20450 0.94843 0.95118 1.04367 1.19945 0.97237 0.88817 0.88177 0.89343 1.60203 1.07986 1.20000 1.39999 1.21504 0.97457 0.91160 0.93926 0.88660 1.22868 1.03363 0.99718 0.99642 1.20159 0.84767 0.80241 0.85491 1.90673 1.25563 1.55978 1.67352 1.48122 1.27218 1.34566 1.24014 1.21747 0.88404 0.97167 0.98738 1.19246 0.95946 0.94258 0.77769 1.21443 1.24656 1.19281 0.90901 0.92544 1.24933 0.95152 0.95272 0.98776 1.69933 1.32473 1.31025 1.20078 0.86514 0.79583 0.79913 0.81501 1.20541 1.21188 1.19963 1.23256 0.96803 1.04423 0.95398 1.23048 0.96698 0.97665 1.03791 1.22921 1.03983 0.95672 0.98381 1.22128 0.92347 0.93235 0.91242 1.67343 1.40859 0.98791 1.19123 0.92424 0.92153 0.88861 0.84377 0.84509 0.83219 0.91061 0.90347 0.92229 0.93637 0.92569 0.91022 0.93927 0.95149 0.92773 0.87516 0.88596 0.88733 0.89011 0.88739 0.82589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.38 101.05 1.05 1.43 16 2 O -0.31 -3.78 10.48 -18.72 -0.20 -3.97 16 3 C 0.31 4.01 7.49 -17.12 -0.13 3.88 16 4 C -0.19 -2.09 10.04 -39.28 -0.39 -2.48 16 5 C -0.04 -0.38 9.39 -39.31 -0.37 -0.75 16 6 C -0.14 -1.62 4.62 -104.48 -0.48 -2.10 16 7 C 0.17 1.71 2.43 -68.87 -0.17 1.54 16 8 H 0.09 0.88 7.08 -51.93 -0.37 0.51 16 9 N -0.65 -8.60 5.01 -102.17 -0.51 -9.11 16 10 C 0.07 1.02 2.19 -68.87 -0.15 0.87 16 11 H 0.10 1.24 6.69 -51.92 -0.35 0.89 16 12 C -0.20 -2.12 8.55 37.16 0.32 -1.80 16 13 C 0.51 10.42 7.14 -10.99 -0.08 10.34 16 14 O -0.52 -13.29 16.01 5.55 0.09 -13.20 16 15 N -0.61 -12.67 2.86 -182.95 -0.52 -13.19 16 16 C 0.08 1.28 8.80 59.85 0.53 1.80 16 17 C 0.25 6.51 5.16 -5.19 -0.03 6.48 16 18 C -0.52 -15.06 9.38 -34.44 -0.32 -15.38 16 19 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 21 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 22 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 26 C -0.18 -1.41 3.80 -90.62 -0.34 -1.76 16 27 C -0.18 -1.19 8.37 -26.69 -0.22 -1.41 16 28 C -0.17 -1.21 9.87 -26.69 -0.26 -1.48 16 29 C 0.17 2.09 10.48 -17.56 -0.18 1.91 16 30 N -0.54 -7.31 9.22 -13.33 -0.12 -7.44 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.10 16 32 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.35 4.30 7.44 -39.29 -0.29 4.01 16 37 H 0.07 0.60 4.70 -51.93 -0.24 0.36 16 38 H 0.08 0.82 4.53 -51.93 -0.24 0.59 16 39 H 0.06 0.68 8.13 -51.92 -0.42 0.26 16 40 H 0.05 0.59 6.97 -51.93 -0.36 0.23 16 41 H 0.06 0.69 5.99 -51.93 -0.31 0.38 16 42 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 43 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 44 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.11 0.85 7.93 -51.93 -0.41 0.44 16 47 H 0.10 0.63 8.05 -51.93 -0.42 0.21 16 48 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.09 0.66 7.71 -51.93 -0.40 0.26 16 51 H 0.16 1.83 7.26 -52.49 -0.38 1.45 16 LS Contribution 410.20 15.07 6.18 6.18 Total: -1.00 -35.52 410.20 -8.62 -44.14 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.92 Total: 2.84 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.34 Total: 2.77 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.42 Total: -55.96 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.11 Total: -17.18 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.52 -8.62 -44.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599694605.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.544 kcal (2) G-P(sol) polarization free energy of solvation -35.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds