Wall clock time and date at job start Wed Apr 1 2020 05:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 117.00042 * 2 1 4 4 C 1.38924 * 119.68568 * 180.02562 * 3 2 1 5 5 C 1.38375 * 119.11147 * 180.02562 * 4 3 2 6 6 C 1.38836 * 118.48653 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.35575 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47107 * 19.99554 * 7 6 5 9 9 N 1.46898 * 109.47301 * 139.99889 * 7 6 5 10 10 C 1.46891 * 111.00131 * 204.99647 * 9 7 6 11 11 H 1.09009 * 109.47292 * 35.00481 * 10 9 7 12 12 C 1.53001 * 109.47868 * 275.00398 * 10 9 7 13 13 C 1.50702 * 109.47259 * 154.99985 * 10 9 7 14 14 O 1.21283 * 119.99478 * 0.02562 * 13 10 9 15 15 N 1.34773 * 120.00430 * 179.97438 * 13 10 9 16 16 C 1.46506 * 119.99969 * 0.02562 * 15 13 10 17 17 C 1.46499 * 120.00036 * 179.72648 * 15 13 10 18 18 C 1.50703 * 109.47126 * 270.27831 * 17 15 13 19 19 H 1.08002 * 119.99820 * 359.97438 * 18 17 15 20 20 C 1.37876 * 119.99889 * 180.02562 * 18 17 15 21 21 N 1.31518 * 120.00192 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00045 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46767 * 89.99886 * 22 20 18 24 24 H 1.48493 * 109.47240 * 210.00027 * 22 20 18 25 25 H 1.48500 * 109.46974 * 329.99973 * 22 20 18 26 26 C 1.53006 * 109.46955 * 260.00386 * 7 6 5 27 27 C 1.53003 * 117.50007 * 128.74892 * 26 7 6 28 28 C 1.52992 * 117.49931 * 60.08507 * 26 7 6 29 29 C 1.38042 * 119.28724 * 0.25711 * 6 5 4 30 30 N 1.31971 * 120.83573 * 359.44878 * 29 6 5 31 31 H 1.08999 * 109.46673 * 299.99823 * 1 2 3 32 32 H 1.08996 * 109.47233 * 60.00062 * 1 2 3 33 33 H 1.09009 * 109.46868 * 180.02562 * 1 2 3 34 34 H 1.08001 * 120.44010 * 0.02562 * 4 3 2 35 35 H 1.08000 * 120.75926 * 179.97438 * 5 4 3 36 36 H 1.00909 * 110.99507 * 81.04528 * 9 7 6 37 37 H 1.08998 * 109.46762 * 59.99490 * 12 10 9 38 38 H 1.08994 * 109.47722 * 180.02562 * 12 10 9 39 39 H 1.09009 * 109.46732 * 300.00426 * 12 10 9 40 40 H 1.08999 * 109.46892 * 269.72362 * 16 15 13 41 41 H 1.09000 * 109.46803 * 29.71536 * 16 15 13 42 42 H 1.09000 * 109.47214 * 149.72329 * 16 15 13 43 43 H 1.08994 * 109.47173 * 30.28203 * 17 15 13 44 44 H 1.09005 * 109.47077 * 150.28374 * 17 15 13 45 45 H 0.96995 * 119.99689 * 179.97438 * 21 20 18 46 46 H 1.08998 * 115.54614 * 274.41131 * 26 7 6 47 47 H 1.08996 * 117.49775 * 359.97438 * 27 26 7 48 48 H 1.08998 * 117.49566 * 145.01687 * 27 26 7 49 49 H 1.09007 * 117.50004 * 214.97553 * 28 26 7 50 50 H 1.08998 * 117.50690 * 359.97438 * 28 26 7 51 51 H 1.08002 * 119.58431 * 179.72135 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 -0.0005 5 6 4.0485 2.5131 0.0000 6 6 3.2505 3.6492 0.0005 7 6 3.8768 5.0198 0.0017 8 1 4.9063 4.9491 -0.3494 9 7 3.1156 5.9067 -0.8882 10 6 3.9574 7.0038 -1.3837 11 1 4.9751 6.6425 -1.5319 12 6 3.9644 8.1429 -0.3623 13 6 3.4073 7.5069 -2.6934 14 8 2.4117 7.0016 -3.1671 15 7 4.0211 8.5191 -3.3379 16 6 5.2234 9.1299 -2.7654 17 6 3.4897 9.0041 -4.6140 18 6 4.1160 8.2304 -5.7455 19 1 4.8380 7.4552 -5.5350 20 6 3.7681 8.5129 -7.0494 21 7 2.8893 9.4572 -7.3057 22 14 4.5449 7.5543 -8.4520 23 1 3.7175 6.3582 -8.7520 24 1 4.6230 8.4174 -9.6579 25 1 5.9118 7.1253 -8.0610 26 6 3.8605 5.5867 1.4228 27 6 5.1786 6.1233 1.9845 28 6 4.6056 4.8026 2.5047 29 6 1.8771 3.5097 0.0059 30 7 1.3186 2.3140 -0.0004 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0278 0.0005 34 1 4.0229 0.3695 -0.0014 35 1 5.1255 2.5947 0.0000 36 1 2.2925 6.2630 -0.4258 37 1 4.3623 7.7790 0.5850 38 1 4.5886 8.9571 -0.7302 39 1 2.9467 8.5042 -0.2140 40 1 4.9370 9.9613 -2.1213 41 1 5.7650 8.3867 -2.1802 42 1 5.8626 9.4961 -3.5688 43 1 2.4088 8.8656 -4.6337 44 1 3.7225 10.0631 -4.7255 45 1 2.6449 9.6561 -8.2231 46 1 2.9436 6.0992 1.7139 47 1 6.0574 6.0721 1.3418 48 1 5.1288 6.9886 2.6455 49 1 4.1792 4.7996 3.5080 50 1 5.1072 3.8826 2.2045 51 1 1.2518 4.3902 0.0109 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599694605.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:51 Heat of formation + Delta-G solvation = -18.371872 kcal Electronic energy + Delta-G solvation = -31032.163884 eV Core-core repulsion = 26932.520440 eV Total energy + Delta-G solvation = -4099.643444 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.73390 -40.86877 -39.62266 -38.31673 -36.54867 -36.13393 -34.72624 -33.65754 -32.75033 -30.63541 -29.28423 -28.14988 -27.51024 -26.43521 -25.63160 -24.53859 -23.51239 -23.08461 -23.02913 -21.37890 -19.99240 -19.36061 -18.68600 -18.05189 -17.99202 -17.21685 -16.99832 -16.79010 -16.49757 -16.04763 -15.92939 -15.66464 -15.47354 -15.22576 -14.90975 -14.64805 -14.40155 -14.26033 -14.13893 -14.03396 -13.69554 -13.49906 -13.32110 -13.19493 -13.11150 -12.84238 -12.72176 -12.62786 -12.54491 -12.38035 -12.30747 -12.23890 -12.13797 -11.98079 -11.66715 -11.27924 -10.98829 -10.79399 -10.64466 -10.56734 -10.31283 -9.40823 -9.31694 -9.21760 -8.21281 -6.36046 0.22314 0.33967 1.35506 1.39388 1.48457 1.98261 2.18097 2.29890 2.43272 2.78094 2.93913 3.07819 3.22569 3.39613 3.72494 3.83407 3.94442 4.01459 4.10155 4.13850 4.18359 4.21755 4.23901 4.33633 4.40358 4.44221 4.45783 4.48813 4.67134 4.69183 4.73762 4.81662 4.85175 4.88564 4.89915 4.98421 5.01199 5.06308 5.11238 5.24495 5.25820 5.32423 5.35420 5.37185 5.51738 5.58976 5.87420 6.03585 6.09003 6.26111 6.38658 6.73028 6.89944 6.91734 7.30910 7.63698 8.85383 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009785 B = 0.002893 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.837242 B = 9676.093917 C =11607.244940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.322 6.322 3 C 0.287 3.713 4 C -0.191 4.191 5 C -0.035 4.035 6 C -0.146 4.146 7 C 0.178 3.822 8 H 0.099 0.901 9 N -0.676 5.676 10 C 0.091 3.909 11 H 0.116 0.884 12 C -0.186 4.186 13 C 0.496 3.504 14 O -0.585 6.585 15 N -0.612 5.612 16 C 0.077 3.923 17 C 0.261 3.739 18 C -0.540 4.540 19 H 0.052 0.948 20 C 0.006 3.994 21 N -0.930 5.930 22 Si 0.966 3.034 23 H -0.283 1.283 24 H -0.274 1.274 25 H -0.260 1.260 26 C -0.186 4.186 27 C -0.164 4.164 28 C -0.170 4.170 29 C 0.144 3.856 30 N -0.561 5.561 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.123 0.877 34 H 0.160 0.840 35 H 0.170 0.830 36 H 0.348 0.652 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.062 0.938 43 H -0.007 1.007 44 H 0.023 0.977 45 H 0.266 0.734 46 H 0.104 0.896 47 H 0.105 0.895 48 H 0.104 0.896 49 H 0.093 0.907 50 H 0.098 0.902 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.320 -11.156 24.667 28.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.230 6.230 3 C 0.109 3.891 4 C -0.212 4.212 5 C -0.060 4.060 6 C -0.149 4.149 7 C 0.068 3.932 8 H 0.117 0.883 9 N -0.306 5.306 10 C -0.022 4.022 11 H 0.134 0.866 12 C -0.245 4.245 13 C 0.284 3.716 14 O -0.465 6.465 15 N -0.345 5.345 16 C -0.065 4.065 17 C 0.139 3.861 18 C -0.578 4.578 19 H 0.070 0.930 20 C -0.193 4.193 21 N -0.570 5.570 22 Si 0.790 3.210 23 H -0.210 1.210 24 H -0.199 1.199 25 H -0.184 1.184 26 C -0.206 4.206 27 C -0.201 4.201 28 C -0.208 4.208 29 C -0.011 4.011 30 N -0.285 5.285 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.141 0.859 34 H 0.177 0.823 35 H 0.187 0.813 36 H 0.168 0.832 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.080 0.920 43 H 0.011 0.989 44 H 0.041 0.959 45 H 0.075 0.925 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.123 0.877 49 H 0.112 0.888 50 H 0.116 0.884 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.990 -12.042 23.697 27.248 hybrid contribution 0.119 0.522 -0.608 0.810 sum 6.109 -11.520 23.089 26.517 Atomic orbital electron populations 1.22977 0.76353 1.04409 1.01821 1.86191 1.23945 1.24683 1.88186 1.20216 0.90431 0.84740 0.93718 1.21292 0.91397 1.00595 1.07870 1.21575 1.01657 0.89911 0.92892 1.20645 0.94326 0.96282 1.03621 1.19913 0.96843 0.87482 0.88991 0.88303 1.60058 1.08639 1.20305 1.41634 1.21346 0.97510 0.92491 0.90839 0.86635 1.22809 1.03265 0.98608 0.99786 1.21481 0.83804 0.79074 0.87254 1.90635 1.28466 1.57955 1.69422 1.48141 1.28882 1.35049 1.22410 1.22083 0.86293 0.99014 0.99069 1.18688 0.93200 0.93755 0.80456 1.21722 1.24699 1.19361 0.92044 0.92980 1.25862 0.95594 0.96214 1.01607 1.70052 1.33627 1.32407 1.20879 0.85445 0.79066 0.78194 0.78292 1.20971 1.19852 1.18389 1.23056 0.97694 1.05569 0.94263 1.23154 0.95811 0.97717 1.03371 1.22962 1.03586 0.96166 0.98063 1.22227 0.93400 0.92965 0.92523 1.67267 1.41863 0.99394 1.19937 0.92571 0.93516 0.85886 0.82280 0.81279 0.83162 0.88036 0.89506 0.93237 0.90758 0.88687 0.91953 0.98858 0.95929 0.92465 0.87751 0.87634 0.87743 0.88802 0.88385 0.82999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.38 113.37 1.18 1.92 16 2 O -0.32 -7.80 10.48 -89.90 -0.94 -8.74 16 3 C 0.29 7.41 7.49 84.79 0.63 8.05 16 4 C -0.19 -3.91 10.04 22.47 0.23 -3.69 16 5 C -0.03 -0.62 9.39 22.45 0.21 -0.41 16 6 C -0.15 -3.08 4.62 -19.77 -0.09 -3.17 16 7 C 0.18 3.20 2.43 44.17 0.11 3.30 16 8 H 0.10 1.58 7.08 -2.39 -0.02 1.56 16 9 N -0.68 -17.23 5.01 -477.16 -2.39 -19.62 16 10 C 0.09 2.38 2.19 44.17 0.10 2.47 16 11 H 0.12 2.56 6.69 -2.38 -0.02 2.55 16 12 C -0.19 -3.43 8.55 71.98 0.62 -2.81 16 13 C 0.50 20.52 7.14 87.66 0.63 21.15 16 14 O -0.59 -31.36 16.01 -3.04 -0.05 -31.41 16 15 N -0.61 -25.73 2.86 -851.12 -2.43 -28.16 16 16 C 0.08 2.18 8.80 127.77 1.12 3.31 16 17 C 0.26 14.32 5.16 85.63 0.44 14.76 16 18 C -0.54 -31.73 9.38 25.60 0.24 -31.49 16 19 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 20 C 0.01 0.35 5.46 84.65 0.46 0.81 16 21 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 22 Si 0.97 45.86 29.54 68.60 2.03 47.88 16 23 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 26 C -0.19 -2.43 3.80 -10.79 -0.04 -2.47 16 27 C -0.16 -1.52 8.37 30.62 0.26 -1.27 16 28 C -0.17 -1.86 9.87 30.62 0.30 -1.55 16 29 C 0.14 3.71 10.48 84.63 0.89 4.60 16 30 N -0.56 -15.74 9.22 -308.95 -2.85 -18.59 16 31 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 32 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 33 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.35 8.65 7.44 -89.69 -0.67 7.98 16 37 H 0.10 1.28 4.70 -2.39 -0.01 1.27 16 38 H 0.09 1.47 4.53 -2.39 -0.01 1.46 16 39 H 0.05 1.04 8.13 -2.38 -0.02 1.02 16 40 H 0.07 1.69 6.97 -2.39 -0.02 1.68 16 41 H 0.09 1.94 5.99 -2.39 -0.01 1.93 16 42 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 43 H -0.01 -0.43 7.42 -2.39 -0.02 -0.45 16 44 H 0.02 1.25 8.07 -2.38 -0.02 1.23 16 45 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 46 H 0.10 1.45 7.93 -2.39 -0.02 1.43 16 47 H 0.11 0.83 8.05 -2.39 -0.02 0.82 16 48 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 50 H 0.10 1.02 7.71 -2.39 -0.02 1.00 16 51 H 0.15 3.82 7.26 -2.91 -0.02 3.80 16 Total: -1.00 -82.51 410.20 1.20 -81.31 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.28 Total: 20.92 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 7.28 Total: 13.50 kcal Atomic # 7 Polarization: -116.08 SS G_CDS: -7.39 Total: -123.47 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -0.99 Total: -40.15 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -82.51 1.20 -81.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599694605.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.938 kcal (2) G-P(sol) polarization free energy of solvation -82.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds