Wall clock time and date at job start Wed Apr 1 2020 04:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47204 * 2 1 4 4 C 1.53001 * 109.47196 * 119.99505 * 2 1 3 5 5 N 1.46504 * 109.47119 * 185.00089 * 4 2 1 6 6 C 1.34779 * 119.99758 * 180.02562 * 5 4 2 7 7 O 1.21581 * 120.00229 * 4.99009 * 6 5 4 8 8 N 1.34774 * 119.99816 * 184.98286 * 6 5 4 9 9 C 1.47078 * 120.88309 * 174.53798 * 8 6 5 10 10 C 1.53697 * 108.27814 * 128.75721 * 9 8 6 11 11 N 1.46900 * 109.25279 * 54.08313 * 10 9 8 12 12 C 1.46902 * 110.99734 * 172.60798 * 11 10 9 13 13 C 1.50704 * 109.47225 * 294.30140 * 12 11 10 14 14 H 1.08004 * 120.00172 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00188 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00258 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00175 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47439 * 59.99853 * 17 15 13 19 19 H 1.48510 * 109.47392 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47159 * 299.99740 * 17 15 13 21 21 C 1.46890 * 111.27299 * 296.75427 * 11 10 9 22 22 C 1.47084 * 120.88301 * 354.82432 * 8 6 5 23 23 O 1.42900 * 109.47036 * 239.99802 * 2 1 3 24 24 C 1.35893 * 117.00015 * 85.17615 * 23 2 1 25 25 C 1.38733 * 120.05648 * 354.76184 * 24 23 2 26 26 C 1.38145 * 119.94270 * 180.02562 * 25 24 23 27 27 C 1.38262 * 120.05952 * 359.97438 * 26 25 24 28 28 C 1.38266 * 120.10775 * 0.30129 * 27 26 25 29 29 C 1.38141 * 120.05866 * 359.44595 * 28 27 26 30 30 H 1.09003 * 109.47069 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47412 * 299.99985 * 1 2 3 32 32 H 1.08994 * 109.47563 * 60.00162 * 1 2 3 33 33 H 1.09001 * 109.47281 * 305.00419 * 4 2 1 34 34 H 1.09004 * 109.47134 * 65.00457 * 4 2 1 35 35 H 0.97003 * 120.00072 * 0.02562 * 5 4 2 36 36 H 1.09001 * 109.63309 * 248.52769 * 9 8 6 37 37 H 1.09008 * 109.62644 * 9.10890 * 9 8 6 38 38 H 1.08999 * 109.64939 * 294.08595 * 10 9 8 39 39 H 1.09000 * 109.41944 * 173.94945 * 10 9 8 40 40 H 1.09003 * 109.47302 * 54.30095 * 12 11 10 41 41 H 1.09000 * 109.47140 * 174.30573 * 12 11 10 42 42 H 0.97003 * 120.00793 * 180.02562 * 16 15 13 43 43 H 1.08998 * 109.49474 * 303.14977 * 21 11 10 44 44 H 1.09004 * 109.49423 * 183.06216 * 21 11 10 45 45 H 1.09001 * 109.62565 * 350.88857 * 22 8 6 46 46 H 1.08992 * 109.63086 * 111.47027 * 22 8 6 47 47 H 1.07995 * 120.02640 * 0.02562 * 25 24 23 48 48 H 1.08004 * 119.96738 * 180.02562 * 26 25 24 49 49 H 1.08003 * 119.94680 * 180.02562 * 27 26 25 50 50 H 1.08008 * 119.97164 * 179.70298 * 28 27 26 51 51 H 1.08001 * 120.02957 * 180.25491 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5001 -0.6177 1.3110 6 6 4.1731 -1.1833 2.3326 7 8 3.5795 -1.8556 3.1535 8 7 5.5041 -1.0036 2.4442 9 6 6.2390 -1.5103 3.6131 10 6 7.4365 -2.3323 3.1105 11 7 8.2312 -1.5141 2.1848 12 6 9.4785 -2.1972 1.8166 13 6 10.3569 -2.3300 3.0339 14 1 10.0219 -1.9458 3.9861 15 6 11.5877 -2.9429 2.9324 16 7 11.9955 -3.4113 1.7731 17 14 12.6762 -3.1082 4.4415 18 1 11.9666 -3.8981 5.4796 19 1 13.9366 -3.7998 4.0695 20 1 12.9905 -1.7585 4.9753 21 6 7.4553 -1.1550 0.9904 22 6 6.2595 -0.2901 1.4032 23 8 2.0063 -0.6737 -1.1668 24 6 2.1159 0.0634 -2.3032 25 6 1.6708 1.3772 -2.3249 26 6 1.7830 2.1241 -3.4816 27 6 2.3387 1.5636 -4.6168 28 6 2.7778 0.2527 -4.5993 29 6 2.6727 -0.4969 -3.4437 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6053 -0.2616 2.1370 34 1 1.7517 -1.7715 1.2057 35 1 3.9824 -0.1422 0.6166 36 1 6.5924 -0.6729 4.2148 37 1 5.5837 -2.1437 4.2112 38 1 7.0788 -3.2227 2.5936 39 1 8.0550 -2.6271 3.9582 40 1 9.2482 -3.1880 1.4249 41 1 9.9991 -1.6172 1.0545 42 1 12.8613 -3.8429 1.7017 43 1 7.0973 -2.0618 0.5030 44 1 8.0875 -0.5960 0.3004 45 1 5.6178 -0.1163 0.5394 46 1 6.6148 0.6623 1.7964 47 1 1.2371 1.8155 -1.4384 48 1 1.4370 3.1471 -3.4989 49 1 2.4258 2.1494 -5.5200 50 1 3.2071 -0.1844 -5.4888 51 1 3.0197 -1.5196 -3.4294 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601570813.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:20 Heat of formation + Delta-G solvation = -22.541975 kcal Electronic energy + Delta-G solvation = -30497.445896 eV Core-core repulsion = 26397.621622 eV Total energy + Delta-G solvation = -4099.824273 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.78153 -40.09232 -38.15197 -37.52842 -35.06405 -34.38858 -32.61930 -32.22677 -31.19344 -30.59395 -29.98070 -28.34355 -26.50543 -25.26223 -23.77218 -23.14583 -22.75446 -22.12055 -21.28173 -20.71061 -19.27348 -18.78014 -17.98691 -16.68375 -16.46606 -16.26015 -16.03945 -15.63192 -15.45322 -14.99191 -14.84286 -14.56276 -14.39950 -14.02990 -13.96886 -13.79900 -13.76321 -13.56972 -13.30756 -13.14617 -12.87369 -12.61384 -12.55398 -12.18679 -11.98226 -11.90774 -11.60005 -11.38966 -11.27258 -11.14248 -11.00927 -10.82478 -10.74130 -10.59328 -10.49424 -10.00050 -9.83712 -9.35060 -9.28326 -9.19555 -8.54339 -8.46973 -8.31801 -7.31139 -6.04922 -4.06824 0.98640 1.10395 2.67493 2.75130 3.30357 3.33074 3.37077 3.39902 3.44964 3.88363 4.17503 4.40082 4.41090 4.48796 4.55759 4.58606 4.79236 4.80226 5.00284 5.04022 5.15142 5.18920 5.22330 5.24222 5.29910 5.37937 5.41898 5.46478 5.52794 5.63227 5.66469 5.68050 5.83795 5.95258 5.97094 6.04943 6.06187 6.19985 6.21652 6.37126 6.42855 6.43945 6.57840 6.69335 7.04626 7.07664 7.23406 7.30102 7.75158 7.98944 8.02756 8.13819 8.48942 8.66882 9.00161 9.57661 11.05903 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014071 B = 0.002191 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.440525 B =12776.689385 C =14322.463950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.071 3.929 3 H 0.081 0.919 4 C 0.145 3.855 5 N -0.749 5.749 6 C 0.709 3.291 7 O -0.596 6.596 8 N -0.624 5.624 9 C 0.133 3.867 10 C 0.050 3.950 11 N -0.535 5.535 12 C 0.194 3.806 13 C -0.510 4.510 14 H 0.064 0.936 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.899 3.101 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.041 3.959 22 C 0.119 3.881 23 O -0.305 6.305 24 C 0.131 3.869 25 C -0.212 4.212 26 C -0.081 4.081 27 C -0.160 4.160 28 C -0.080 4.080 29 C -0.152 4.152 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.397 0.603 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.025 0.975 39 H 0.097 0.903 40 H -0.009 1.009 41 H 0.031 0.969 42 H 0.262 0.738 43 H 0.027 0.973 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.129 0.871 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.129 0.871 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.956 11.705 -10.356 28.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.014 3.986 3 H 0.098 0.902 4 C 0.021 3.979 5 N -0.408 5.408 6 C 0.410 3.590 7 O -0.475 6.475 8 N -0.361 5.361 9 C 0.010 3.990 10 C -0.079 4.079 11 N -0.260 5.260 12 C 0.069 3.931 13 C -0.548 4.548 14 H 0.082 0.918 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.089 4.089 22 C -0.005 4.005 23 O -0.219 6.219 24 C 0.086 3.914 25 C -0.231 4.231 26 C -0.099 4.099 27 C -0.179 4.179 28 C -0.098 4.098 29 C -0.170 4.170 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.233 0.767 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.043 0.957 39 H 0.115 0.885 40 H 0.009 0.991 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.045 0.955 44 H 0.099 0.901 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.147 0.853 48 H 0.141 0.859 49 H 0.140 0.860 50 H 0.147 0.853 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -24.070 11.345 -9.538 28.267 hybrid contribution 0.706 -0.431 -0.173 0.844 sum -23.364 10.915 -9.711 27.556 Atomic orbital electron populations 1.22292 0.93671 1.04122 1.03385 1.22744 0.95181 0.96930 0.83731 0.90162 1.21254 0.79802 1.01985 0.94893 1.45156 1.06999 1.61014 1.27588 1.15778 0.81574 0.79924 0.81699 1.90887 1.67873 1.44277 1.44492 1.47400 1.05052 1.59730 1.23937 1.21846 0.92470 0.98407 0.86289 1.22449 0.93513 0.93489 0.98432 1.62083 1.05715 1.45412 1.12801 1.19718 0.84570 0.91776 0.96996 1.21104 1.01227 1.37117 0.95363 0.91817 1.24989 0.97891 0.95527 0.96165 1.69945 1.20693 1.39331 1.23829 0.86547 0.79619 0.78300 0.82860 1.20224 1.21386 1.20135 1.22370 0.94382 0.98104 0.94018 1.21758 0.92913 0.96096 0.89698 1.86208 1.80993 1.38094 1.16575 1.19045 0.95231 0.90277 0.86862 1.21310 1.07258 0.94359 1.00171 1.20958 0.97197 0.99402 0.92362 1.21086 1.02164 0.95828 0.98778 1.21014 0.97555 0.93980 0.97226 1.20524 1.03708 1.01479 0.91311 0.90801 0.90410 0.91291 0.89610 0.90382 0.76700 0.91129 0.89281 0.95666 0.88504 0.99127 0.95089 0.92827 0.95507 0.90125 0.91388 0.90664 0.85338 0.85882 0.85958 0.85334 0.85123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.02 9.18 37.16 0.34 -0.68 16 2 C 0.07 0.53 2.26 -26.73 -0.06 0.47 16 3 H 0.08 0.52 6.29 -51.93 -0.33 0.19 16 4 C 0.15 1.42 5.35 -4.04 -0.02 1.40 16 5 N -0.75 -8.93 5.41 -65.22 -0.35 -9.29 16 6 C 0.71 11.23 8.30 -86.92 -0.72 10.51 16 7 O -0.60 -11.40 15.80 5.29 0.08 -11.32 16 8 N -0.62 -9.80 3.00 -177.90 -0.53 -10.33 16 9 C 0.13 2.23 6.64 -3.36 -0.02 2.21 16 10 C 0.05 0.99 5.47 -3.46 -0.02 0.97 16 11 N -0.53 -11.23 4.62 -235.46 -1.09 -12.32 16 12 C 0.19 4.98 4.72 -4.97 -0.02 4.95 16 13 C -0.51 -14.06 8.41 -34.44 -0.29 -14.35 16 14 H 0.06 1.72 7.13 -52.48 -0.37 1.35 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 17 Si 0.90 21.47 29.54 -169.99 -5.02 16.44 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.04 0.71 5.62 -3.70 -0.02 0.68 16 22 C 0.12 1.65 6.53 -3.60 -0.02 1.62 16 23 O -0.30 -2.98 9.74 -19.40 -0.19 -3.17 16 24 C 0.13 1.22 6.60 -39.21 -0.26 0.96 16 25 C -0.21 -1.65 8.26 -39.43 -0.33 -1.97 16 26 C -0.08 -0.58 10.04 -39.61 -0.40 -0.97 16 27 C -0.16 -1.15 10.04 -39.56 -0.40 -1.55 16 28 C -0.08 -0.62 10.04 -39.61 -0.40 -1.01 16 29 C -0.15 -1.38 9.99 -39.43 -0.39 -1.78 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.38 6.95 -51.93 -0.36 0.02 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.40 4.14 6.01 -40.82 -0.25 3.89 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.09 1.52 7.04 -51.92 -0.37 1.15 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 2.01 6.67 -51.93 -0.35 1.67 16 40 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 41 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.08 1.32 7.99 -51.93 -0.41 0.91 16 45 H 0.07 0.75 5.74 -51.93 -0.30 0.45 16 46 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.13 0.78 5.45 -52.49 -0.29 0.50 16 48 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 49 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 50 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 51 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 406.68 15.07 6.13 6.13 Total: -1.00 -33.35 406.68 -11.43 -44.78 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -8.06 Total: 1.91 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -3.13 Total: 2.94 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -1.24 Total: -57.72 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.11 Total: -14.49 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.35 -11.43 -44.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601570813.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.240 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds