Wall clock time and date at job start Wed Apr 1 2020 04:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47204 * 2 1 4 4 C 1.53001 * 109.47196 * 119.99505 * 2 1 3 5 5 N 1.46504 * 109.47119 * 185.00089 * 4 2 1 6 6 C 1.34779 * 119.99758 * 180.02562 * 5 4 2 7 7 O 1.21581 * 120.00229 * 4.99009 * 6 5 4 8 8 N 1.34774 * 119.99816 * 184.98286 * 6 5 4 9 9 C 1.47078 * 120.88309 * 174.53798 * 8 6 5 10 10 C 1.53697 * 108.27814 * 128.75721 * 9 8 6 11 11 N 1.46900 * 109.25279 * 54.08313 * 10 9 8 12 12 C 1.46902 * 110.99734 * 172.60798 * 11 10 9 13 13 C 1.50704 * 109.47225 * 294.30140 * 12 11 10 14 14 H 1.08004 * 120.00172 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00188 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00258 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00175 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47439 * 59.99853 * 17 15 13 19 19 H 1.48510 * 109.47392 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47159 * 299.99740 * 17 15 13 21 21 C 1.46890 * 111.27299 * 296.75427 * 11 10 9 22 22 C 1.47084 * 120.88301 * 354.82432 * 8 6 5 23 23 O 1.42900 * 109.47036 * 239.99802 * 2 1 3 24 24 C 1.35893 * 117.00015 * 85.17615 * 23 2 1 25 25 C 1.38733 * 120.05648 * 354.76184 * 24 23 2 26 26 C 1.38145 * 119.94270 * 180.02562 * 25 24 23 27 27 C 1.38262 * 120.05952 * 359.97438 * 26 25 24 28 28 C 1.38266 * 120.10775 * 0.30129 * 27 26 25 29 29 C 1.38141 * 120.05866 * 359.44595 * 28 27 26 30 30 H 1.09003 * 109.47069 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47412 * 299.99985 * 1 2 3 32 32 H 1.08994 * 109.47563 * 60.00162 * 1 2 3 33 33 H 1.09001 * 109.47281 * 305.00419 * 4 2 1 34 34 H 1.09004 * 109.47134 * 65.00457 * 4 2 1 35 35 H 0.97003 * 120.00072 * 0.02562 * 5 4 2 36 36 H 1.09001 * 109.63309 * 248.52769 * 9 8 6 37 37 H 1.09008 * 109.62644 * 9.10890 * 9 8 6 38 38 H 1.08999 * 109.64939 * 294.08595 * 10 9 8 39 39 H 1.09000 * 109.41944 * 173.94945 * 10 9 8 40 40 H 1.09003 * 109.47302 * 54.30095 * 12 11 10 41 41 H 1.09000 * 109.47140 * 174.30573 * 12 11 10 42 42 H 0.97003 * 120.00793 * 180.02562 * 16 15 13 43 43 H 1.08998 * 109.49474 * 303.14977 * 21 11 10 44 44 H 1.09004 * 109.49423 * 183.06216 * 21 11 10 45 45 H 1.09001 * 109.62565 * 350.88857 * 22 8 6 46 46 H 1.08992 * 109.63086 * 111.47027 * 22 8 6 47 47 H 1.07995 * 120.02640 * 0.02562 * 25 24 23 48 48 H 1.08004 * 119.96738 * 180.02562 * 26 25 24 49 49 H 1.08003 * 119.94680 * 180.02562 * 27 26 25 50 50 H 1.08008 * 119.97164 * 179.70298 * 28 27 26 51 51 H 1.08001 * 120.02957 * 180.25491 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5001 -0.6177 1.3110 6 6 4.1731 -1.1833 2.3326 7 8 3.5795 -1.8556 3.1535 8 7 5.5041 -1.0036 2.4442 9 6 6.2390 -1.5103 3.6131 10 6 7.4365 -2.3323 3.1105 11 7 8.2312 -1.5141 2.1848 12 6 9.4785 -2.1972 1.8166 13 6 10.3569 -2.3300 3.0339 14 1 10.0219 -1.9458 3.9861 15 6 11.5877 -2.9429 2.9324 16 7 11.9955 -3.4113 1.7731 17 14 12.6762 -3.1082 4.4415 18 1 11.9666 -3.8981 5.4796 19 1 13.9366 -3.7998 4.0695 20 1 12.9905 -1.7585 4.9753 21 6 7.4553 -1.1550 0.9904 22 6 6.2595 -0.2901 1.4032 23 8 2.0063 -0.6737 -1.1668 24 6 2.1159 0.0634 -2.3032 25 6 1.6708 1.3772 -2.3249 26 6 1.7830 2.1241 -3.4816 27 6 2.3387 1.5636 -4.6168 28 6 2.7778 0.2527 -4.5993 29 6 2.6727 -0.4969 -3.4437 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6053 -0.2616 2.1370 34 1 1.7517 -1.7715 1.2057 35 1 3.9824 -0.1422 0.6166 36 1 6.5924 -0.6729 4.2148 37 1 5.5837 -2.1437 4.2112 38 1 7.0788 -3.2227 2.5936 39 1 8.0550 -2.6271 3.9582 40 1 9.2482 -3.1880 1.4249 41 1 9.9991 -1.6172 1.0545 42 1 12.8613 -3.8429 1.7017 43 1 7.0973 -2.0618 0.5030 44 1 8.0875 -0.5960 0.3004 45 1 5.6178 -0.1163 0.5394 46 1 6.6148 0.6623 1.7964 47 1 1.2371 1.8155 -1.4384 48 1 1.4370 3.1471 -3.4989 49 1 2.4258 2.1494 -5.5200 50 1 3.2071 -0.1844 -5.4888 51 1 3.0197 -1.5196 -3.4294 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601570813.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:19 Heat of formation + Delta-G solvation = -44.274663 kcal Electronic energy + Delta-G solvation = -30498.388296 eV Core-core repulsion = 26397.621622 eV Total energy + Delta-G solvation = -4100.766673 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.63588 -41.10685 -39.22344 -38.55994 -36.05049 -35.99219 -34.41104 -33.21146 -32.03473 -31.68874 -30.54906 -30.02860 -27.71137 -26.71462 -24.64416 -24.26510 -23.92236 -23.35037 -22.20683 -21.93256 -20.50996 -19.40212 -19.17719 -18.50334 -17.59758 -17.14592 -16.91401 -16.65392 -16.59662 -16.24475 -16.01272 -15.74050 -15.59716 -15.37102 -15.28170 -15.06325 -14.78363 -14.41566 -14.35545 -14.09311 -13.80346 -13.67112 -13.46142 -13.44457 -13.08986 -13.06021 -12.77553 -12.56629 -12.43564 -12.40852 -12.32523 -12.23037 -12.12484 -11.96818 -11.75253 -11.57600 -11.41051 -11.19049 -10.61480 -10.32216 -9.91532 -9.63093 -9.13943 -9.07243 -8.20824 -6.30987 0.42378 0.52200 1.42578 1.45458 1.53016 1.54961 2.03886 2.15646 2.40638 2.80443 2.88344 3.11164 3.20540 3.54203 3.84399 3.90930 3.94558 4.01431 4.04935 4.05777 4.12359 4.23479 4.30992 4.39355 4.41356 4.51408 4.54113 4.57538 4.65104 4.68720 4.70793 4.81939 4.83547 4.90263 4.93207 4.99846 5.11619 5.15260 5.19742 5.21063 5.38916 5.40179 5.42386 5.52152 5.63036 5.64782 5.86087 5.89410 6.02189 6.23608 6.48418 6.55723 6.84122 6.85924 7.38820 7.45380 8.90260 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014071 B = 0.002191 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.440525 B =12776.689385 C =14322.463950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.076 3.924 3 H 0.098 0.902 4 C 0.143 3.857 5 N -0.734 5.734 6 C 0.706 3.294 7 O -0.632 6.632 8 N -0.628 5.628 9 C 0.145 3.855 10 C 0.056 3.944 11 N -0.535 5.535 12 C 0.209 3.791 13 C -0.524 4.524 14 H 0.067 0.933 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.970 3.030 18 H -0.269 1.269 19 H -0.285 1.285 20 H -0.265 1.265 21 C 0.038 3.962 22 C 0.129 3.871 23 O -0.326 6.326 24 C 0.115 3.885 25 C -0.214 4.214 26 C -0.085 4.085 27 C -0.166 4.166 28 C -0.087 4.087 29 C -0.175 4.175 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.406 0.594 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.006 0.994 39 H 0.082 0.918 40 H -0.044 1.044 41 H 0.011 0.989 42 H 0.264 0.736 43 H 0.013 0.987 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.092 0.908 47 H 0.146 0.854 48 H 0.147 0.853 49 H 0.142 0.858 50 H 0.143 0.857 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.154 14.260 -10.159 30.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.020 3.980 3 H 0.116 0.884 4 C 0.019 3.981 5 N -0.392 5.392 6 C 0.407 3.593 7 O -0.514 6.514 8 N -0.365 5.365 9 C 0.022 3.978 10 C -0.074 4.074 11 N -0.260 5.260 12 C 0.083 3.917 13 C -0.562 4.562 14 H 0.085 0.915 15 C -0.197 4.197 16 N -0.576 5.576 17 Si 0.794 3.206 18 H -0.194 1.194 19 H -0.211 1.211 20 H -0.190 1.190 21 C -0.092 4.092 22 C 0.006 3.994 23 O -0.240 6.240 24 C 0.070 3.930 25 C -0.233 4.233 26 C -0.103 4.103 27 C -0.184 4.184 28 C -0.105 4.105 29 C -0.194 4.194 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.244 0.756 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.024 0.976 39 H 0.100 0.900 40 H -0.026 1.026 41 H 0.029 0.971 42 H 0.073 0.927 43 H 0.032 0.968 44 H 0.108 0.892 45 H 0.119 0.881 46 H 0.110 0.890 47 H 0.164 0.836 48 H 0.165 0.835 49 H 0.160 0.840 50 H 0.161 0.839 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -25.302 13.936 -9.374 30.369 hybrid contribution 1.023 -1.231 -0.337 1.635 sum -24.280 12.706 -9.712 29.073 Atomic orbital electron populations 1.22279 0.92199 1.03974 1.04585 1.22785 0.96170 0.97029 0.82060 0.88431 1.21414 0.78412 1.01467 0.96783 1.45094 1.07891 1.59832 1.26421 1.15925 0.81466 0.79787 0.82106 1.90863 1.68559 1.45882 1.46070 1.47412 1.05303 1.59842 1.23952 1.21621 0.91079 0.98369 0.86758 1.22386 0.94221 0.93371 0.97382 1.62018 1.05149 1.44358 1.14490 1.19373 0.86552 0.89952 0.95831 1.21437 1.01765 1.37048 0.95964 0.91489 1.25918 0.99442 0.95021 0.99292 1.70078 1.21247 1.40150 1.26111 0.85431 0.77496 0.78707 0.78965 1.19354 1.21060 1.19029 1.22514 0.95530 0.98325 0.92787 1.21804 0.91726 0.95348 0.90506 1.86174 1.81484 1.39119 1.17264 1.19203 0.96107 0.91052 0.86674 1.21524 1.06893 0.93697 1.01168 1.21318 0.96514 1.00464 0.91966 1.21411 1.01515 0.95680 0.99751 1.21257 0.97523 0.94433 0.97287 1.20672 1.04862 1.01590 0.92270 0.91694 0.88492 0.90723 0.88412 0.92237 0.75643 0.89756 0.89506 0.97583 0.89998 1.02646 0.97109 0.92695 0.96834 0.89225 0.88092 0.88990 0.83638 0.83514 0.83979 0.83946 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 9.18 71.98 0.66 -0.98 16 2 C 0.08 1.00 2.26 30.59 0.07 1.06 16 3 H 0.10 0.96 6.29 -2.39 -0.02 0.94 16 4 C 0.14 2.60 5.35 86.38 0.46 3.06 16 5 N -0.73 -16.28 5.41 -478.52 -2.59 -18.87 16 6 C 0.71 21.56 8.30 179.05 1.49 23.05 16 7 O -0.63 -23.93 15.80 -3.97 -0.06 -23.99 16 8 N -0.63 -18.92 3.00 -835.02 -2.51 -21.42 16 9 C 0.15 4.80 6.64 86.50 0.57 5.38 16 10 C 0.06 2.23 5.47 86.54 0.47 2.71 16 11 N -0.54 -22.77 4.62 -898.87 -4.15 -26.92 16 12 C 0.21 11.11 4.72 85.56 0.40 11.51 16 13 C -0.52 -29.41 8.41 25.60 0.22 -29.19 16 14 H 0.07 3.64 7.13 -2.91 -0.02 3.62 16 15 C 0.00 0.07 5.46 84.65 0.46 0.54 16 16 N -0.94 -56.38 13.29 21.44 0.28 -56.09 16 17 Si 0.97 44.11 29.54 68.60 2.03 46.13 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 19 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 21 C 0.04 1.29 5.62 86.39 0.49 1.77 16 22 C 0.13 3.30 6.53 86.35 0.56 3.86 16 23 O -0.33 -6.09 9.74 -92.34 -0.90 -6.99 16 24 C 0.11 2.01 6.60 22.51 0.15 2.16 16 25 C -0.21 -2.83 8.26 22.37 0.18 -2.65 16 26 C -0.08 -0.98 10.04 22.25 0.22 -0.75 16 27 C -0.17 -2.02 10.04 22.28 0.22 -1.80 16 28 C -0.09 -1.26 10.04 22.25 0.22 -1.03 16 29 C -0.18 -3.16 9.99 22.37 0.22 -2.94 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.65 6.95 -2.39 -0.02 0.63 16 33 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.41 7.47 6.01 -92.71 -0.56 6.92 16 36 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.09 2.94 7.04 -2.38 -0.02 2.93 16 38 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.08 3.50 6.67 -2.39 -0.02 3.48 16 40 H -0.04 -2.61 8.12 -2.39 -0.02 -2.63 16 41 H 0.01 0.61 7.97 -2.39 -0.02 0.59 16 42 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 43 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.09 2.89 7.99 -2.39 -0.02 2.88 16 45 H 0.10 1.94 5.74 -2.39 -0.01 1.92 16 46 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.15 1.31 5.45 -2.91 -0.02 1.29 16 48 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 49 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 50 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 51 H 0.12 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -73.89 406.68 -0.44 -74.33 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.37 Total: 18.08 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 7.09 Total: 15.75 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -8.96 Total: -123.31 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.96 Total: -30.98 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -73.89 -0.44 -74.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601570813.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.057 kcal (2) G-P(sol) polarization free energy of solvation -73.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds