Wall clock time and date at job start Wed Apr 1 2020 04:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46881 * 2 1 4 4 C 1.52995 * 109.47630 * 239.99388 * 2 1 3 5 5 N 1.46499 * 109.47482 * 179.97438 * 4 2 1 6 6 C 1.34778 * 120.00198 * 180.27438 * 5 4 2 7 7 O 1.21593 * 119.99576 * 354.63531 * 6 5 4 8 8 N 1.34770 * 120.00025 * 174.63092 * 6 5 4 9 9 C 1.47085 * 120.87926 * 174.41604 * 8 6 5 10 10 C 1.53697 * 108.27824 * 128.75642 * 9 8 6 11 11 N 1.46893 * 109.25815 * 54.07727 * 10 9 8 12 12 C 1.46901 * 110.99989 * 172.60811 * 11 10 9 13 13 C 1.50692 * 109.47395 * 294.30354 * 12 11 10 14 14 H 1.08009 * 120.00030 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00232 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00079 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99951 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47291 * 89.99860 * 17 15 13 19 19 H 1.48506 * 109.46832 * 209.99834 * 17 15 13 20 20 H 1.48498 * 109.47206 * 329.99793 * 17 15 13 21 21 C 1.46898 * 111.27164 * 296.75955 * 11 10 9 22 22 C 1.47080 * 120.88358 * 354.68854 * 8 6 5 23 23 O 1.42904 * 109.47239 * 119.99367 * 2 1 3 24 24 C 1.35905 * 116.99963 * 275.03972 * 23 2 1 25 25 C 1.38722 * 120.05612 * 4.91160 * 24 23 2 26 26 C 1.38150 * 119.94410 * 179.74462 * 25 24 23 27 27 C 1.38270 * 120.05298 * 0.51050 * 26 25 24 28 28 C 1.38267 * 120.11132 * 359.76740 * 27 26 25 29 29 C 1.38149 * 120.05424 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.46878 * 300.00092 * 1 2 3 31 31 H 1.08993 * 109.46824 * 60.01018 * 1 2 3 32 32 H 1.09005 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47165 * 59.99701 * 4 2 1 34 34 H 1.08997 * 109.47488 * 300.00240 * 4 2 1 35 35 H 0.97006 * 119.99822 * 0.02562 * 5 4 2 36 36 H 1.09004 * 109.62501 * 248.51820 * 9 8 6 37 37 H 1.08991 * 109.62836 * 9.10005 * 9 8 6 38 38 H 1.09007 * 109.64272 * 294.07525 * 10 9 8 39 39 H 1.08998 * 109.42052 * 173.94739 * 10 9 8 40 40 H 1.09004 * 109.46606 * 54.30679 * 12 11 10 41 41 H 1.08999 * 109.46981 * 174.30025 * 12 11 10 42 42 H 0.96998 * 119.99884 * 180.02562 * 16 15 13 43 43 H 1.09000 * 109.49464 * 303.14520 * 21 11 10 44 44 H 1.08996 * 109.49659 * 183.06699 * 21 11 10 45 45 H 1.08995 * 109.62573 * 350.89807 * 22 8 6 46 46 H 1.09003 * 109.62528 * 111.47547 * 22 8 6 47 47 H 1.08007 * 120.03094 * 0.02562 * 25 24 23 48 48 H 1.07993 * 119.97422 * 180.23089 * 26 25 24 49 49 H 1.07992 * 119.94260 * 179.74300 * 27 26 25 50 50 H 1.07994 * 119.97099 * 179.97438 * 28 27 26 51 51 H 1.08001 * 120.01994 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5051 -0.7208 -1.2494 6 6 4.1791 -1.2995 -2.2629 7 8 3.5751 -1.9065 -3.1263 8 7 5.5223 -1.2055 -2.3196 9 6 6.2872 -1.9297 -3.3461 10 6 7.2227 -0.9302 -4.0449 11 7 8.0371 -0.2414 -3.0349 12 6 9.0658 0.5942 -3.6687 13 6 10.0505 -0.2856 -4.3947 14 1 9.9250 -1.3584 -4.3860 15 6 11.1116 0.2787 -5.0703 16 7 11.2642 1.5850 -5.0814 17 14 12.3319 -0.8119 -5.9709 18 1 11.8737 -1.0185 -7.3683 19 1 13.6663 -0.1603 -5.9787 20 1 12.4257 -2.1240 -5.2817 21 6 7.1996 0.5531 -2.1264 22 6 6.2628 -0.3806 -1.3528 23 8 2.0064 -0.6735 1.1669 24 6 2.1118 0.0627 2.3044 25 6 1.6688 1.3771 2.3248 26 6 1.7722 2.1217 3.4839 27 6 2.3264 1.5611 4.6199 28 6 2.7739 0.2530 4.6004 29 6 2.6678 -0.4974 3.4454 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5136 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6768 -0.2076 -2.1392 34 1 1.6769 -1.7490 -1.2491 35 1 3.9901 -0.3007 -0.5218 36 1 6.8745 -2.7187 -2.8764 37 1 5.6025 -2.3634 -4.0748 38 1 6.6316 -0.1989 -4.5962 39 1 7.8749 -1.4657 -4.7347 40 1 8.5947 1.2748 -4.3780 41 1 9.5877 1.1700 -2.9044 42 1 12.0106 1.9820 -5.5570 43 1 6.6089 1.2639 -2.7044 44 1 7.8352 1.0935 -1.4250 45 1 5.5619 0.2102 -0.7632 46 1 6.8477 -1.0237 -0.6952 47 1 1.2393 1.8166 1.4367 48 1 1.4241 3.1438 3.5014 49 1 2.4101 2.1461 5.5238 50 1 3.2067 -0.1824 5.4889 51 1 3.0179 -1.5190 3.4306 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601570819.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:24 Heat of formation + Delta-G solvation = -23.020313 kcal Electronic energy + Delta-G solvation = -30438.007532 eV Core-core repulsion = 26338.162517 eV Total energy + Delta-G solvation = -4099.845016 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.79367 -40.08811 -38.16446 -37.53179 -35.05068 -34.39025 -32.62747 -32.23368 -31.20695 -30.59865 -29.99656 -28.34924 -26.50599 -25.26257 -23.78100 -23.14984 -22.77200 -22.12904 -21.27522 -20.72017 -19.26017 -18.79072 -17.99360 -16.70666 -16.46147 -16.26447 -16.05836 -15.55113 -15.47371 -15.11637 -14.80045 -14.56496 -14.41282 -14.07070 -13.95978 -13.85100 -13.71667 -13.50465 -13.35375 -13.15213 -12.88410 -12.61930 -12.55397 -12.19669 -11.98480 -11.92674 -11.60886 -11.39615 -11.28304 -11.13938 -11.02492 -10.82204 -10.74075 -10.61220 -10.49395 -10.00031 -9.84412 -9.36698 -9.27130 -9.18624 -8.56019 -8.48260 -8.31693 -7.31798 -6.05939 -4.07624 0.96974 1.08736 2.65519 2.75995 3.30457 3.30905 3.37148 3.41383 3.43294 3.89590 4.17880 4.39583 4.41005 4.48035 4.55106 4.58455 4.77932 4.79459 4.99055 5.02455 5.14555 5.18942 5.21092 5.24936 5.29181 5.37686 5.42193 5.45610 5.51992 5.62914 5.65216 5.67635 5.83585 5.94477 5.95744 6.04774 6.04944 6.18133 6.20214 6.36965 6.41517 6.43795 6.57023 6.69189 7.05410 7.05786 7.22540 7.28735 7.74820 7.99240 8.02167 8.13024 8.48190 8.67292 8.99738 9.56987 11.04931 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.002086 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.127031 B =13418.058625 C =14552.264526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.071 3.929 3 H 0.081 0.919 4 C 0.146 3.854 5 N -0.748 5.748 6 C 0.709 3.291 7 O -0.597 6.597 8 N -0.624 5.624 9 C 0.133 3.867 10 C 0.051 3.949 11 N -0.535 5.535 12 C 0.194 3.806 13 C -0.509 4.509 14 H 0.064 0.936 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.272 1.272 21 C 0.042 3.958 22 C 0.119 3.881 23 O -0.305 6.305 24 C 0.131 3.869 25 C -0.212 4.212 26 C -0.081 4.081 27 C -0.160 4.160 28 C -0.080 4.080 29 C -0.152 4.152 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.397 0.603 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.025 0.975 39 H 0.097 0.903 40 H -0.009 1.009 41 H 0.031 0.969 42 H 0.261 0.739 43 H 0.026 0.974 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.129 0.871 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.128 0.872 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.290 0.243 17.956 28.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.014 3.986 3 H 0.099 0.901 4 C 0.021 3.979 5 N -0.406 5.406 6 C 0.410 3.590 7 O -0.476 6.476 8 N -0.361 5.361 9 C 0.010 3.990 10 C -0.078 4.078 11 N -0.260 5.260 12 C 0.069 3.931 13 C -0.547 4.547 14 H 0.082 0.918 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.088 4.088 22 C -0.005 4.005 23 O -0.219 6.219 24 C 0.086 3.914 25 C -0.230 4.230 26 C -0.099 4.099 27 C -0.178 4.178 28 C -0.098 4.098 29 C -0.171 4.171 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.234 0.766 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.043 0.957 39 H 0.115 0.885 40 H 0.009 0.991 41 H 0.049 0.951 42 H 0.071 0.929 43 H 0.044 0.956 44 H 0.099 0.901 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.147 0.853 48 H 0.141 0.859 49 H 0.140 0.860 50 H 0.146 0.854 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.331 -0.613 17.466 28.357 hybrid contribution 0.526 0.769 -0.615 1.116 sum -21.804 0.156 16.851 27.557 Atomic orbital electron populations 1.22297 0.93675 1.04093 1.03420 1.22757 0.95205 0.96982 0.83658 0.90142 1.21259 0.79733 1.01942 0.94951 1.45110 1.06468 1.63500 1.25570 1.15787 0.81607 0.79616 0.81965 1.90888 1.67543 1.48161 1.40983 1.47395 1.03826 1.50700 1.34191 1.21847 0.93090 0.94223 0.89872 1.22442 0.94655 0.96547 0.94160 1.62073 1.12866 1.31283 1.19798 1.19721 0.88411 0.91650 0.93299 1.21143 1.08998 0.93673 1.30908 0.91751 1.24995 0.97937 0.95039 0.96635 1.69957 1.31037 1.09687 1.43124 0.86490 0.80356 0.80595 0.79943 1.20710 1.21275 1.19712 1.22365 0.95109 0.94394 0.96931 1.21759 0.94132 0.93414 0.91202 1.86196 1.80985 1.38207 1.16500 1.19041 0.95275 0.90264 0.86845 1.21325 1.07208 0.94357 1.00141 1.20971 0.97142 0.99433 0.92316 1.21088 1.02096 0.95879 0.98783 1.21003 0.97621 0.93999 0.97214 1.20502 1.03828 1.01407 0.91338 0.91297 0.90376 0.90819 0.89691 0.90412 0.76636 0.91156 0.89274 0.95696 0.88503 0.99149 0.95087 0.92894 0.95591 0.90134 0.91368 0.90667 0.85306 0.85853 0.85959 0.85369 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 9.18 37.16 0.34 -0.69 16 2 C 0.07 0.53 2.31 -26.73 -0.06 0.47 16 3 H 0.08 0.54 6.28 -51.93 -0.33 0.21 16 4 C 0.15 1.43 5.37 -4.05 -0.02 1.41 16 5 N -0.75 -8.95 5.31 -65.23 -0.35 -9.29 16 6 C 0.71 11.24 8.30 -86.92 -0.72 10.52 16 7 O -0.60 -11.41 15.81 5.28 0.08 -11.33 16 8 N -0.62 -9.81 3.00 -177.91 -0.53 -10.35 16 9 C 0.13 2.24 6.64 -3.36 -0.02 2.21 16 10 C 0.05 1.00 5.47 -3.47 -0.02 0.98 16 11 N -0.53 -11.18 4.62 -235.48 -1.09 -12.27 16 12 C 0.19 4.94 4.72 -4.98 -0.02 4.92 16 13 C -0.51 -13.99 8.41 -34.45 -0.29 -14.28 16 14 H 0.06 1.74 7.13 -52.48 -0.37 1.37 16 15 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 17 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 C 0.04 0.71 5.62 -3.70 -0.02 0.69 16 22 C 0.12 1.64 6.48 -3.60 -0.02 1.62 16 23 O -0.31 -2.86 9.54 -19.44 -0.19 -3.05 16 24 C 0.13 1.17 6.60 -39.22 -0.26 0.91 16 25 C -0.21 -1.63 8.25 -39.43 -0.33 -1.96 16 26 C -0.08 -0.57 10.04 -39.60 -0.40 -0.97 16 27 C -0.16 -1.11 10.04 -39.56 -0.40 -1.51 16 28 C -0.08 -0.58 10.04 -39.60 -0.40 -0.98 16 29 C -0.15 -1.30 9.99 -39.43 -0.39 -1.69 16 30 H 0.07 0.38 6.95 -51.93 -0.36 0.02 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.40 4.17 6.00 -40.82 -0.24 3.93 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.52 7.04 -51.93 -0.37 1.15 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 2.00 6.67 -51.93 -0.35 1.65 16 40 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 41 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 1.31 7.99 -51.93 -0.41 0.89 16 45 H 0.07 0.75 5.85 -51.93 -0.30 0.44 16 46 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.13 0.80 5.45 -52.48 -0.29 0.52 16 48 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 49 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 50 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 51 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 406.49 15.07 6.13 6.13 Total: -1.00 -33.20 406.49 -11.43 -44.63 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -8.07 Total: 1.72 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -3.13 Total: 3.11 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -1.23 Total: -57.60 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.10 Total: -14.38 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.20 -11.43 -44.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601570819.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.611 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds