Wall clock time and date at job start Wed Apr 1 2020 04:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46881 * 2 1 4 4 C 1.52995 * 109.47630 * 239.99388 * 2 1 3 5 5 N 1.46499 * 109.47482 * 179.97438 * 4 2 1 6 6 C 1.34778 * 120.00198 * 180.27438 * 5 4 2 7 7 O 1.21593 * 119.99576 * 354.63531 * 6 5 4 8 8 N 1.34770 * 120.00025 * 174.63092 * 6 5 4 9 9 C 1.47085 * 120.87926 * 174.41604 * 8 6 5 10 10 C 1.53697 * 108.27824 * 128.75642 * 9 8 6 11 11 N 1.46893 * 109.25815 * 54.07727 * 10 9 8 12 12 C 1.46901 * 110.99989 * 172.60811 * 11 10 9 13 13 C 1.50692 * 109.47395 * 294.30354 * 12 11 10 14 14 H 1.08009 * 120.00030 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00232 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00079 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99951 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47291 * 89.99860 * 17 15 13 19 19 H 1.48506 * 109.46832 * 209.99834 * 17 15 13 20 20 H 1.48498 * 109.47206 * 329.99793 * 17 15 13 21 21 C 1.46898 * 111.27164 * 296.75955 * 11 10 9 22 22 C 1.47080 * 120.88358 * 354.68854 * 8 6 5 23 23 O 1.42904 * 109.47239 * 119.99367 * 2 1 3 24 24 C 1.35905 * 116.99963 * 275.03972 * 23 2 1 25 25 C 1.38722 * 120.05612 * 4.91160 * 24 23 2 26 26 C 1.38150 * 119.94410 * 179.74462 * 25 24 23 27 27 C 1.38270 * 120.05298 * 0.51050 * 26 25 24 28 28 C 1.38267 * 120.11132 * 359.76740 * 27 26 25 29 29 C 1.38149 * 120.05424 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.46878 * 300.00092 * 1 2 3 31 31 H 1.08993 * 109.46824 * 60.01018 * 1 2 3 32 32 H 1.09005 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47165 * 59.99701 * 4 2 1 34 34 H 1.08997 * 109.47488 * 300.00240 * 4 2 1 35 35 H 0.97006 * 119.99822 * 0.02562 * 5 4 2 36 36 H 1.09004 * 109.62501 * 248.51820 * 9 8 6 37 37 H 1.08991 * 109.62836 * 9.10005 * 9 8 6 38 38 H 1.09007 * 109.64272 * 294.07525 * 10 9 8 39 39 H 1.08998 * 109.42052 * 173.94739 * 10 9 8 40 40 H 1.09004 * 109.46606 * 54.30679 * 12 11 10 41 41 H 1.08999 * 109.46981 * 174.30025 * 12 11 10 42 42 H 0.96998 * 119.99884 * 180.02562 * 16 15 13 43 43 H 1.09000 * 109.49464 * 303.14520 * 21 11 10 44 44 H 1.08996 * 109.49659 * 183.06699 * 21 11 10 45 45 H 1.08995 * 109.62573 * 350.89807 * 22 8 6 46 46 H 1.09003 * 109.62528 * 111.47547 * 22 8 6 47 47 H 1.08007 * 120.03094 * 0.02562 * 25 24 23 48 48 H 1.07993 * 119.97422 * 180.23089 * 26 25 24 49 49 H 1.07992 * 119.94260 * 179.74300 * 27 26 25 50 50 H 1.07994 * 119.97099 * 179.97438 * 28 27 26 51 51 H 1.08001 * 120.01994 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5051 -0.7208 -1.2494 6 6 4.1791 -1.2995 -2.2629 7 8 3.5751 -1.9065 -3.1263 8 7 5.5223 -1.2055 -2.3196 9 6 6.2872 -1.9297 -3.3461 10 6 7.2227 -0.9302 -4.0449 11 7 8.0371 -0.2414 -3.0349 12 6 9.0658 0.5942 -3.6687 13 6 10.0505 -0.2856 -4.3947 14 1 9.9250 -1.3584 -4.3860 15 6 11.1116 0.2787 -5.0703 16 7 11.2642 1.5850 -5.0814 17 14 12.3319 -0.8119 -5.9709 18 1 11.8737 -1.0185 -7.3683 19 1 13.6663 -0.1603 -5.9787 20 1 12.4257 -2.1240 -5.2817 21 6 7.1996 0.5531 -2.1264 22 6 6.2628 -0.3806 -1.3528 23 8 2.0064 -0.6735 1.1669 24 6 2.1118 0.0627 2.3044 25 6 1.6688 1.3771 2.3248 26 6 1.7722 2.1217 3.4839 27 6 2.3264 1.5611 4.6199 28 6 2.7739 0.2530 4.6004 29 6 2.6678 -0.4974 3.4454 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5136 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6768 -0.2076 -2.1392 34 1 1.6769 -1.7490 -1.2491 35 1 3.9901 -0.3007 -0.5218 36 1 6.8745 -2.7187 -2.8764 37 1 5.6025 -2.3634 -4.0748 38 1 6.6316 -0.1989 -4.5962 39 1 7.8749 -1.4657 -4.7347 40 1 8.5947 1.2748 -4.3780 41 1 9.5877 1.1700 -2.9044 42 1 12.0106 1.9820 -5.5570 43 1 6.6089 1.2639 -2.7044 44 1 7.8352 1.0935 -1.4250 45 1 5.5619 0.2102 -0.7632 46 1 6.8477 -1.0237 -0.6952 47 1 1.2393 1.8166 1.4367 48 1 1.4241 3.1438 3.5014 49 1 2.4101 2.1461 5.5238 50 1 3.2067 -0.1824 5.4889 51 1 3.0179 -1.5190 3.4306 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601570819.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:23 Heat of formation + Delta-G solvation = -44.389161 kcal Electronic energy + Delta-G solvation = -30438.934155 eV Core-core repulsion = 26338.162517 eV Total energy + Delta-G solvation = -4100.771638 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.63298 -41.09736 -39.21786 -38.55200 -36.03396 -35.98672 -34.40777 -33.21601 -32.03047 -31.68046 -30.54083 -30.02474 -27.71215 -26.70908 -24.63716 -24.26236 -23.91561 -23.34333 -22.21252 -21.91182 -20.49561 -19.38260 -19.19161 -18.50217 -17.60202 -17.16236 -16.80882 -16.66115 -16.60581 -16.27623 -16.00393 -15.85236 -15.48462 -15.35359 -15.28306 -15.05463 -14.80785 -14.39638 -14.31910 -14.03858 -13.95848 -13.55344 -13.48738 -13.44954 -13.08511 -13.07873 -12.75112 -12.58892 -12.42886 -12.39727 -12.32659 -12.22510 -12.12161 -11.95838 -11.75104 -11.57603 -11.39516 -11.18205 -10.62157 -10.31257 -9.90449 -9.62803 -9.13123 -9.05634 -8.20883 -6.30595 0.43370 0.53101 1.42700 1.43259 1.54280 1.55570 2.03325 2.15500 2.40676 2.81818 2.89342 3.11415 3.21428 3.54258 3.83550 3.91418 3.95118 4.01782 4.05208 4.06608 4.12952 4.24091 4.31710 4.40193 4.42524 4.52195 4.54160 4.56574 4.65664 4.69449 4.70785 4.81852 4.83633 4.90456 4.93816 5.00345 5.12705 5.15811 5.19249 5.21691 5.39110 5.40673 5.42796 5.53086 5.63716 5.65720 5.86940 5.89773 6.02985 6.24851 6.48081 6.57052 6.84757 6.86418 7.39184 7.45577 8.90298 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.002086 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.127031 B =13418.058625 C =14552.264526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.076 3.924 3 H 0.094 0.906 4 C 0.144 3.856 5 N -0.734 5.734 6 C 0.706 3.294 7 O -0.632 6.632 8 N -0.628 5.628 9 C 0.145 3.855 10 C 0.057 3.943 11 N -0.538 5.538 12 C 0.209 3.791 13 C -0.523 4.523 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.263 1.263 21 C 0.039 3.961 22 C 0.128 3.872 23 O -0.322 6.322 24 C 0.114 3.886 25 C -0.217 4.217 26 C -0.087 4.087 27 C -0.166 4.166 28 C -0.086 4.086 29 C -0.171 4.171 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.406 0.594 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.009 0.991 39 H 0.081 0.919 40 H -0.042 1.042 41 H 0.011 0.989 42 H 0.264 0.736 43 H 0.018 0.982 44 H 0.089 0.911 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.142 0.858 48 H 0.143 0.857 49 H 0.141 0.859 50 H 0.146 0.854 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.070 0.205 19.451 30.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.020 3.980 3 H 0.111 0.889 4 C 0.020 3.980 5 N -0.391 5.391 6 C 0.407 3.593 7 O -0.514 6.514 8 N -0.365 5.365 9 C 0.021 3.979 10 C -0.072 4.072 11 N -0.263 5.263 12 C 0.083 3.917 13 C -0.561 4.561 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.575 5.575 17 Si 0.793 3.207 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.187 1.187 21 C -0.090 4.090 22 C 0.005 3.995 23 O -0.236 6.236 24 C 0.070 3.930 25 C -0.235 4.235 26 C -0.105 4.105 27 C -0.184 4.184 28 C -0.104 4.104 29 C -0.190 4.190 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.244 0.756 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.028 0.972 39 H 0.099 0.901 40 H -0.024 1.024 41 H 0.029 0.971 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.107 0.893 45 H 0.121 0.879 46 H 0.105 0.895 47 H 0.160 0.840 48 H 0.161 0.839 49 H 0.159 0.841 50 H 0.163 0.837 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.140 -0.641 19.013 29.956 hybrid contribution 0.706 0.834 -1.013 1.490 sum -22.435 0.193 18.000 28.763 Atomic orbital electron populations 1.22279 0.92272 1.04065 1.04440 1.22753 0.96142 0.96896 0.82186 0.88873 1.21408 0.78266 1.01775 0.96593 1.45045 1.07368 1.62193 1.24536 1.15930 0.81450 0.79590 0.82294 1.90864 1.68191 1.49787 1.42549 1.47404 1.04056 1.50840 1.34205 1.21615 0.92581 0.93490 0.90212 1.22364 0.94403 0.96458 0.93967 1.61999 1.13456 1.30985 1.19838 1.19371 0.89166 0.91196 0.91957 1.21465 1.09540 0.93960 1.31144 0.91608 1.25902 0.99916 0.96386 0.97435 1.70081 1.31866 1.11493 1.44075 0.85392 0.77719 0.78883 0.78690 1.20047 1.20826 1.18732 1.22498 0.95256 0.94828 0.96405 1.21804 0.94173 0.93071 0.90445 1.86161 1.81429 1.38996 1.17033 1.19207 0.96172 0.90897 0.86772 1.21516 1.07079 0.93953 1.00998 1.21300 0.96740 1.00381 0.92089 1.21410 1.01478 0.95924 0.99596 1.21273 0.97418 0.94261 0.97429 1.20681 1.04582 1.01712 0.91989 0.90764 0.88806 0.91420 0.89121 0.91604 0.75582 0.90184 0.89462 0.97238 0.90070 1.02436 0.97096 0.92706 0.96386 0.89255 0.87878 0.89538 0.84026 0.83879 0.84069 0.83658 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 9.18 71.98 0.66 -1.03 16 2 C 0.08 1.02 2.31 30.59 0.07 1.09 16 3 H 0.09 1.01 6.28 -2.39 -0.02 1.00 16 4 C 0.14 2.63 5.37 86.38 0.46 3.09 16 5 N -0.73 -16.33 5.31 -478.54 -2.54 -18.87 16 6 C 0.71 21.60 8.30 179.06 1.49 23.08 16 7 O -0.63 -23.93 15.81 -4.01 -0.06 -23.99 16 8 N -0.63 -18.98 3.00 -835.04 -2.51 -21.49 16 9 C 0.14 4.81 6.64 86.50 0.57 5.38 16 10 C 0.06 2.27 5.47 86.54 0.47 2.75 16 11 N -0.54 -22.69 4.62 -898.91 -4.15 -26.84 16 12 C 0.21 11.00 4.72 85.55 0.40 11.40 16 13 C -0.52 -29.22 8.41 25.60 0.22 -29.00 16 14 H 0.07 3.59 7.13 -2.91 -0.02 3.56 16 15 C 0.00 0.09 5.46 84.65 0.46 0.55 16 16 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 17 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 20 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 21 C 0.04 1.31 5.62 86.38 0.49 1.80 16 22 C 0.13 3.28 6.48 86.35 0.56 3.84 16 23 O -0.32 -5.64 9.54 -92.48 -0.88 -6.52 16 24 C 0.11 1.90 6.60 22.50 0.15 2.05 16 25 C -0.22 -2.91 8.25 22.36 0.18 -2.72 16 26 C -0.09 -1.03 10.04 22.26 0.22 -0.81 16 27 C -0.17 -1.95 10.04 22.28 0.22 -1.72 16 28 C -0.09 -1.11 10.04 22.26 0.22 -0.89 16 29 C -0.17 -2.76 9.99 22.37 0.22 -2.54 16 30 H 0.07 0.67 6.95 -2.39 -0.02 0.66 16 31 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.41 7.55 6.00 -92.70 -0.56 6.99 16 36 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 37 H 0.09 2.97 7.04 -2.39 -0.02 2.95 16 38 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 39 H 0.08 3.44 6.67 -2.39 -0.02 3.43 16 40 H -0.04 -2.44 8.12 -2.38 -0.02 -2.46 16 41 H 0.01 0.61 7.97 -2.39 -0.02 0.59 16 42 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 43 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.09 2.83 7.99 -2.39 -0.02 2.81 16 45 H 0.10 1.94 5.85 -2.39 -0.01 1.93 16 46 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.14 1.41 5.45 -2.91 -0.02 1.40 16 48 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 49 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 50 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 51 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -72.67 406.49 -0.38 -73.04 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.37 Total: 17.94 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 7.08 Total: 16.31 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -8.91 Total: -122.83 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.95 Total: -30.51 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -72.67 -0.38 -73.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601570819.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.655 kcal (2) G-P(sol) polarization free energy of solvation -72.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds