Wall clock time and date at job start Wed Apr 1 2020 04:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35978 * 116.99339 * 2 1 4 4 C 1.38540 * 120.08707 * 359.97438 * 3 2 1 5 5 C 1.38243 * 120.01628 * 180.02562 * 4 3 2 6 6 C 1.38276 * 120.18175 * 359.97438 * 5 4 3 7 7 C 1.38204 * 120.16182 * 359.97438 * 6 5 4 8 8 C 1.38718 * 119.98282 * 0.02562 * 7 6 5 9 9 N 1.40123 * 120.08874 * 179.97438 * 8 7 6 10 10 C 1.34772 * 120.00092 * 24.64036 * 9 8 7 11 11 O 1.21295 * 120.00203 * 5.92480 * 10 9 8 12 12 C 1.50697 * 120.00026 * 185.91875 * 10 9 8 13 13 H 1.08998 * 109.47464 * 64.25419 * 12 10 9 14 14 C 1.53008 * 109.47367 * 304.25289 * 12 10 9 15 15 N 1.46898 * 109.47352 * 184.25269 * 12 10 9 16 16 C 1.46950 * 111.00383 * 189.64465 * 15 12 10 17 17 C 1.53053 * 109.36596 * 176.81119 * 16 15 12 18 18 N 1.46950 * 109.36487 * 58.40298 * 17 16 15 19 19 C 1.46898 * 110.99950 * 176.81354 * 18 17 16 20 20 C 1.50699 * 109.47354 * 58.82495 * 19 18 17 21 21 H 1.07994 * 120.00005 * 5.01286 * 20 19 18 22 22 C 1.37882 * 120.00090 * 185.01683 * 20 19 18 23 23 N 1.31516 * 119.99754 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00097 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47129 * 89.99439 * 24 22 20 26 26 H 1.48495 * 109.47364 * 209.99805 * 24 22 20 27 27 H 1.48499 * 109.46937 * 329.99937 * 24 22 20 28 28 C 1.46962 * 110.88050 * 300.67780 * 18 17 16 29 29 C 1.46960 * 110.99937 * 65.84164 * 15 12 10 30 30 H 1.09005 * 109.46777 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47376 * 300.00121 * 1 2 3 32 32 H 1.08999 * 109.47210 * 60.00846 * 1 2 3 33 33 H 1.08000 * 119.99399 * 0.03037 * 4 3 2 34 34 H 1.08000 * 119.91491 * 180.02562 * 5 4 3 35 35 H 1.07994 * 119.92223 * 179.97438 * 6 5 4 36 36 H 1.07996 * 120.00901 * 179.74817 * 7 6 5 37 37 H 0.97008 * 119.99739 * 204.64426 * 9 8 7 38 38 H 1.08998 * 109.46655 * 299.99982 * 14 12 10 39 39 H 1.08995 * 109.46450 * 60.00178 * 14 12 10 40 40 H 1.08999 * 109.47080 * 179.97438 * 14 12 10 41 41 H 1.08998 * 109.49104 * 296.78140 * 16 15 12 42 42 H 1.09008 * 109.49269 * 56.84631 * 16 15 12 43 43 H 1.08998 * 109.48995 * 298.43218 * 17 16 15 44 44 H 1.09004 * 109.50732 * 178.38450 * 17 16 15 45 45 H 1.09008 * 109.47011 * 178.82326 * 19 18 17 46 46 H 1.09005 * 109.47410 * 298.82191 * 19 18 17 47 47 H 0.97004 * 119.99493 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.48898 * 299.35679 * 28 18 17 49 49 H 1.08998 * 109.48768 * 179.28720 * 28 18 17 50 50 H 1.08996 * 109.49108 * 303.15932 * 29 15 12 51 51 H 1.09002 * 109.48656 * 63.20530 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2933 2.3746 -0.0005 5 6 1.9223 3.6056 -0.0011 6 6 3.3030 3.6808 -0.0005 7 6 4.0614 2.5255 0.0011 8 6 3.4373 1.2866 0.0016 9 7 4.2040 0.1137 0.0027 10 6 5.4605 0.1305 0.4898 11 8 5.8903 1.1307 1.0247 12 6 6.3314 -1.0935 0.3701 13 1 6.5225 -1.3019 -0.6826 14 6 5.6202 -2.2898 1.0059 15 7 7.6057 -0.8573 1.0616 16 6 8.5670 -1.9315 0.7761 17 6 9.9035 -1.6086 1.4484 18 7 9.6977 -1.4612 2.8959 19 6 10.9720 -1.2249 3.5874 20 6 11.6182 0.0208 3.0381 21 1 11.0950 0.6254 2.3122 22 6 12.8776 0.3885 3.4623 23 7 13.5146 -0.3476 4.3467 24 14 13.6790 1.9322 2.7809 25 1 13.3229 3.0933 3.6355 26 1 15.1539 1.7602 2.7688 27 1 13.1970 2.1703 1.3966 28 6 8.7364 -0.3868 3.1816 29 6 7.3999 -0.7097 2.5092 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 0.2147 2.3195 -0.0005 34 1 1.3338 4.5112 -0.0011 35 1 3.7900 4.6447 -0.0014 36 1 5.1396 2.5871 -0.0026 37 1 3.8304 -0.7103 -0.3473 38 1 5.4292 -2.0813 2.0586 39 1 4.6748 -2.4650 0.4927 40 1 6.2500 -3.1751 0.9189 41 1 8.1835 -2.8753 1.1638 42 1 8.7122 -2.0128 -0.3012 43 1 10.3003 -0.6788 1.0409 44 1 10.6096 -2.4178 1.2620 45 1 10.7884 -1.0986 4.6545 46 1 11.6338 -2.0768 3.4310 47 1 14.4004 -0.0886 4.6453 48 1 9.1199 0.5569 2.7937 49 1 8.5914 -0.3056 4.2588 50 1 6.6942 0.0997 2.6956 51 1 7.0028 -1.6395 2.9167 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611174077.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:14 Heat of formation + Delta-G solvation = -40.112105 kcal Electronic energy + Delta-G solvation = -31181.127798 eV Core-core repulsion = 27080.541626 eV Total energy + Delta-G solvation = -4100.586171 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.00639 -40.85474 -39.73484 -38.20381 -36.98136 -35.86175 -34.62114 -32.33381 -31.77153 -31.12970 -30.37188 -28.89863 -28.04553 -26.86416 -25.49321 -24.49247 -23.83587 -23.24375 -22.82695 -21.16456 -20.30817 -19.46223 -18.42599 -18.31115 -17.99809 -17.21359 -16.84370 -16.62822 -16.56935 -16.25840 -15.91716 -15.80264 -15.74413 -15.47887 -15.13556 -14.95005 -14.76407 -14.60163 -14.41258 -13.95298 -13.79707 -13.56560 -13.39152 -13.08242 -12.98210 -12.89916 -12.69969 -12.66527 -12.55745 -12.37443 -12.24326 -12.15764 -12.00427 -11.87184 -11.79609 -11.72226 -11.53422 -11.36234 -10.62404 -10.56150 -9.58277 -9.25474 -9.01501 -8.77759 -8.17096 -6.35779 0.25817 0.41724 1.34025 1.34784 1.46107 1.59392 1.88355 2.31211 2.36007 2.82934 2.93740 3.07149 3.37788 3.57386 3.88997 3.92492 4.01561 4.05079 4.16210 4.25325 4.29311 4.38231 4.42252 4.44904 4.45887 4.49054 4.53893 4.58474 4.67012 4.72081 4.78388 4.79810 4.82699 4.94371 5.09278 5.11663 5.13329 5.16756 5.23549 5.29739 5.31266 5.33133 5.49007 5.60773 5.72002 5.82402 5.96575 6.05136 6.07560 6.26305 6.40389 6.46877 6.50548 6.84622 7.15398 7.34990 8.85305 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.002396 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.241632 B =11681.139664 C =12857.336532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.332 6.332 3 C 0.091 3.909 4 C -0.188 4.188 5 C -0.099 4.099 6 C -0.145 4.145 7 C -0.120 4.120 8 C 0.103 3.897 9 N -0.652 5.652 10 C 0.516 3.484 11 O -0.539 6.539 12 C 0.071 3.929 13 H 0.137 0.863 14 C -0.178 4.178 15 N -0.535 5.535 16 C 0.071 3.929 17 C 0.064 3.936 18 N -0.538 5.538 19 C 0.200 3.800 20 C -0.554 4.554 21 H 0.050 0.950 22 C 0.012 3.988 23 N -0.924 5.924 24 Si 0.956 3.044 25 H -0.276 1.276 26 H -0.275 1.275 27 H -0.272 1.272 28 C 0.070 3.930 29 C 0.073 3.927 30 H 0.119 0.881 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.160 0.840 34 H 0.153 0.847 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.424 0.576 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.100 0.900 43 H 0.018 0.982 44 H 0.069 0.931 45 H 0.001 0.999 46 H 0.012 0.988 47 H 0.266 0.734 48 H 0.013 0.987 49 H 0.058 0.942 50 H 0.074 0.926 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.235 -1.036 -13.899 34.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.246 6.246 3 C 0.044 3.956 4 C -0.207 4.207 5 C -0.118 4.118 6 C -0.164 4.164 7 C -0.140 4.140 8 C 0.008 3.992 9 N -0.299 5.299 10 C 0.304 3.696 11 O -0.414 6.414 12 C -0.041 4.041 13 H 0.154 0.846 14 C -0.237 4.237 15 N -0.260 5.260 16 C -0.056 4.056 17 C -0.065 4.065 18 N -0.262 5.262 19 C 0.073 3.927 20 C -0.593 4.593 21 H 0.068 0.932 22 C -0.187 4.187 23 N -0.564 5.564 24 Si 0.781 3.219 25 H -0.202 1.202 26 H -0.201 1.201 27 H -0.196 1.196 28 C -0.059 4.059 29 C -0.055 4.055 30 H 0.137 0.863 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.177 0.823 34 H 0.171 0.829 35 H 0.154 0.846 36 H 0.144 0.856 37 H 0.263 0.737 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.118 0.882 43 H 0.037 0.963 44 H 0.088 0.912 45 H 0.019 0.981 46 H 0.031 0.969 47 H 0.075 0.925 48 H 0.031 0.969 49 H 0.077 0.923 50 H 0.092 0.908 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -30.623 -0.611 -13.426 33.442 hybrid contribution 0.839 0.789 0.083 1.155 sum -29.784 0.178 -13.343 32.636 Atomic orbital electron populations 1.23348 0.76091 1.05643 1.02314 1.85977 1.23639 1.25876 1.89098 1.18747 0.89836 0.86122 1.00880 1.21400 1.01220 0.91204 1.06860 1.21275 0.94106 0.98285 0.98111 1.21235 0.94634 0.98145 1.02366 1.21288 1.01182 0.91169 1.00366 1.17314 0.87797 0.87324 1.06748 1.43281 1.13442 1.11617 1.61526 1.21100 0.81607 0.90215 0.76712 1.90684 1.73215 1.35425 1.42114 1.21714 0.88761 0.91410 1.02195 0.84600 1.22409 1.02298 0.97480 1.01526 1.61917 1.09316 1.45317 1.09409 1.22194 0.90562 0.92122 1.00754 1.21969 0.96807 0.99709 0.87990 1.62662 1.11531 1.42692 1.09280 1.19398 0.86014 0.94404 0.92863 1.21936 1.01888 1.10485 1.24962 0.93207 1.25784 0.97780 0.99921 0.95218 1.70057 1.14278 1.39988 1.32100 0.85592 0.77771 0.79726 0.78827 1.20152 1.20053 1.19634 1.21861 0.92420 0.92922 0.98705 1.22077 0.95945 1.00331 0.87106 0.86298 0.91958 0.91325 0.82304 0.82890 0.84609 0.85557 0.73718 0.92831 0.88880 0.89879 0.92565 0.88196 0.96317 0.91213 0.98102 0.96938 0.92544 0.96881 0.92333 0.90813 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.25 16 2 O -0.33 -4.98 9.91 -93.30 -0.92 -5.91 16 3 C 0.09 1.70 6.70 22.60 0.15 1.85 16 4 C -0.19 -2.77 9.04 22.34 0.20 -2.57 16 5 C -0.10 -1.53 10.04 22.28 0.22 -1.31 16 6 C -0.15 -2.97 10.04 22.27 0.22 -2.75 16 7 C -0.12 -3.10 8.71 22.38 0.19 -2.90 16 8 C 0.10 2.40 6.45 38.19 0.25 2.65 16 9 N -0.65 -13.60 5.20 -303.14 -1.58 -15.18 16 10 C 0.52 13.53 6.61 87.66 0.58 14.11 16 11 O -0.54 -19.13 11.71 -3.08 -0.04 -19.17 16 12 C 0.07 1.56 2.77 44.17 0.12 1.69 16 13 H 0.14 2.29 8.03 -2.39 -0.02 2.27 16 14 C -0.18 -2.96 8.30 71.98 0.60 -2.36 16 15 N -0.53 -16.64 4.37 -874.86 -3.83 -20.47 16 16 C 0.07 2.10 5.33 86.31 0.46 2.56 16 17 C 0.06 2.60 5.23 86.31 0.45 3.05 16 18 N -0.54 -24.67 4.92 -900.26 -4.43 -29.10 16 19 C 0.20 11.10 5.14 85.56 0.44 11.54 16 20 C -0.55 -32.60 7.66 25.60 0.20 -32.40 16 21 H 0.05 2.99 5.82 -2.91 -0.02 2.97 16 22 C 0.01 0.73 5.46 84.66 0.46 1.19 16 23 N -0.92 -56.75 13.29 21.45 0.28 -56.46 16 24 Si 0.96 46.41 29.54 68.60 2.03 48.44 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 27 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 28 C 0.07 3.07 5.32 86.31 0.46 3.53 16 29 C 0.07 2.57 4.60 86.31 0.40 2.97 16 30 H 0.12 0.33 8.14 -2.38 -0.02 0.32 16 31 H 0.06 0.35 7.66 -2.39 -0.02 0.33 16 32 H 0.07 0.29 7.66 -2.39 -0.02 0.27 16 33 H 0.16 1.31 6.30 -2.91 -0.02 1.29 16 34 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 35 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.13 3.95 5.80 -2.91 -0.02 3.93 16 37 H 0.42 6.25 7.36 -92.70 -0.68 5.56 16 38 H 0.05 1.08 6.40 -2.39 -0.02 1.07 16 39 H 0.09 0.98 7.23 -2.39 -0.02 0.96 16 40 H 0.08 1.29 6.74 -2.39 -0.02 1.27 16 41 H 0.06 1.49 6.75 -2.39 -0.02 1.48 16 42 H 0.10 2.38 8.07 -2.38 -0.02 2.36 16 43 H 0.02 0.87 6.61 -2.39 -0.02 0.86 16 44 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 45 H 0.00 0.05 8.11 -2.38 -0.02 0.03 16 46 H 0.01 0.74 8.14 -2.38 -0.02 0.72 16 47 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 48 H 0.01 0.65 6.79 -2.39 -0.02 0.64 16 49 H 0.06 2.59 8.12 -2.39 -0.02 2.57 16 50 H 0.07 2.73 5.97 -2.39 -0.01 2.72 16 51 H 0.05 1.58 6.41 -2.39 -0.02 1.56 16 Total: -1.00 -76.67 392.16 -1.69 -78.36 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.27 Total: 17.39 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 6.52 Total: 2.09 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -9.54 Total: -121.21 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.96 Total: -25.07 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -76.67 -1.69 -78.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174077.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.250 kcal (2) G-P(sol) polarization free energy of solvation -76.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds