Wall clock time and date at job start Wed Apr 1 2020 04:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35973 * 117.00025 * 2 1 4 4 C 1.38717 * 119.98573 * 179.97438 * 3 2 1 5 5 C 1.38084 * 120.01919 * 180.02562 * 4 3 2 6 6 C 1.38855 * 119.98225 * 359.97438 * 5 4 3 7 7 N 1.40103 * 120.01321 * 179.97438 * 6 5 4 8 8 C 1.34778 * 119.99624 * 144.82497 * 7 6 5 9 9 O 1.21290 * 120.00389 * 4.03344 * 8 7 6 10 10 C 1.50701 * 119.99636 * 184.03444 * 8 7 6 11 11 H 1.09000 * 109.47425 * 299.99460 * 10 8 7 12 12 C 1.52997 * 109.47356 * 59.99655 * 10 8 7 13 13 N 1.46900 * 109.47136 * 179.97438 * 10 8 7 14 14 C 1.46955 * 110.99992 * 298.79856 * 13 10 8 15 15 C 1.53049 * 109.36745 * 176.81226 * 14 13 10 16 16 N 1.46957 * 109.36842 * 58.40069 * 15 14 13 17 17 C 1.46899 * 111.00194 * 176.81712 * 16 15 14 18 18 C 1.50693 * 109.47262 * 50.29847 * 17 16 15 19 19 H 1.07996 * 120.00129 * 5.38269 * 18 17 16 20 20 C 1.37884 * 119.99647 * 185.38961 * 18 17 16 21 21 N 1.31507 * 119.99997 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99753 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47480 * 89.99493 * 22 20 18 24 24 H 1.48502 * 109.47097 * 209.99731 * 22 20 18 25 25 H 1.48506 * 109.47256 * 329.99290 * 22 20 18 26 26 C 1.46965 * 110.87427 * 300.68170 * 16 15 14 27 27 C 1.46957 * 111.00505 * 174.99945 * 13 10 8 28 28 C 1.38853 * 119.96818 * 0.24542 * 6 5 4 29 29 C 1.38088 * 119.98506 * 359.52302 * 28 6 5 30 30 H 1.09003 * 109.46967 * 60.00241 * 1 2 3 31 31 H 1.08994 * 109.47139 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47008 * 300.00766 * 1 2 3 33 33 H 1.08001 * 119.99051 * 0.02562 * 4 3 2 34 34 H 1.07994 * 120.01305 * 179.97438 * 5 4 3 35 35 H 0.96998 * 120.00261 * 324.81893 * 7 6 5 36 36 H 1.09006 * 109.47344 * 179.97438 * 12 10 8 37 37 H 1.08997 * 109.47664 * 300.00116 * 12 10 8 38 38 H 1.09000 * 109.47158 * 60.00326 * 12 10 8 39 39 H 1.09001 * 109.48784 * 296.78090 * 14 13 10 40 40 H 1.08999 * 109.49117 * 56.84050 * 14 13 10 41 41 H 1.09007 * 109.48610 * 298.43109 * 15 14 13 42 42 H 1.09003 * 109.49355 * 178.37175 * 15 14 13 43 43 H 1.08997 * 109.46614 * 170.29878 * 17 16 15 44 44 H 1.09005 * 109.46809 * 290.29503 * 17 16 15 45 45 H 0.97004 * 119.99884 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.49098 * 299.34717 * 26 16 15 47 47 H 1.09003 * 109.48140 * 179.28486 * 26 16 15 48 48 H 1.09004 * 109.48331 * 303.15715 * 27 13 10 49 49 H 1.09005 * 109.48581 * 63.19459 * 27 13 10 50 50 H 1.07997 * 120.00390 * 179.74135 * 28 6 5 51 51 H 1.07997 * 119.99361 * 180.20981 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4317 1.2838 0.0005 5 6 4.0593 2.5137 0.0011 6 6 3.3033 3.6785 0.0005 7 7 3.9395 4.9268 0.0016 8 6 3.3961 5.9605 -0.6711 9 8 2.3204 5.8310 -1.2164 10 6 4.1251 7.2774 -0.7459 11 1 4.2743 7.6678 0.2608 12 6 5.4832 7.0710 -1.4194 13 7 3.3307 8.2330 -1.5293 14 6 3.1335 7.7519 -2.9038 15 6 2.2373 8.7342 -3.6617 16 7 2.8600 10.0653 -3.6570 17 6 2.0656 11.0209 -4.4404 18 6 0.6256 10.9563 -4.0009 19 1 0.3446 10.3387 -3.1607 20 6 -0.3332 11.6857 -4.6716 21 7 0.0090 12.4380 -5.6944 22 14 -2.1181 11.6062 -4.1263 23 1 -2.3750 12.6645 -3.1168 24 1 -3.0039 11.8158 -5.2997 25 1 -2.3945 10.2749 -3.5291 26 6 3.0571 10.5464 -2.2824 27 6 3.9534 9.5641 -1.5246 28 6 1.9167 3.6054 0.0046 29 6 1.2905 2.3748 -0.0008 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8899 33 1 4.0195 0.3778 0.0005 34 1 5.1378 2.5699 0.0019 35 1 4.7708 5.0471 0.4866 36 1 6.0103 8.0235 -1.4739 37 1 6.0729 6.3618 -0.8386 38 1 5.3340 6.6807 -2.4262 39 1 4.0985 7.6787 -3.4054 40 1 2.6598 6.7705 -2.8812 41 1 1.2630 8.7867 -3.1757 42 1 2.1133 8.3943 -4.6900 43 1 2.4492 12.0286 -4.2812 44 1 2.1342 10.7689 -5.4987 45 1 -0.6655 12.9515 -6.1660 46 1 2.0921 10.6196 -1.7808 47 1 3.5309 11.5278 -2.3051 48 1 4.0774 9.9039 -0.4963 49 1 4.9279 9.5114 -2.0102 50 1 1.3283 4.5110 0.0084 51 1 0.2120 2.3178 -0.0010 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611174355.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:26 Heat of formation + Delta-G solvation = -14.693105 kcal Electronic energy + Delta-G solvation = -30852.301208 eV Core-core repulsion = 26752.817287 eV Total energy + Delta-G solvation = -4099.483921 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.99735 -40.02615 -38.64173 -37.38679 -35.44402 -34.61096 -32.56381 -31.35336 -30.86486 -30.24846 -29.16854 -27.38381 -27.18321 -25.33803 -24.06636 -23.15632 -22.95951 -22.12358 -21.31279 -20.25705 -18.81846 -18.46201 -17.82615 -17.13496 -16.26033 -16.14970 -15.97270 -15.76000 -15.41872 -14.88756 -14.69339 -14.39847 -14.33143 -14.23257 -14.00928 -13.64278 -13.52819 -13.34983 -13.16371 -12.97919 -12.84992 -12.46407 -12.26422 -12.25292 -11.87422 -11.77323 -11.56473 -11.50892 -11.17719 -11.02987 -10.82262 -10.61408 -10.42617 -10.28610 -10.14771 -10.10322 -9.73561 -9.57086 -9.34733 -9.19911 -8.37799 -8.04378 -7.94395 -7.09313 -5.97003 -4.05267 1.03893 1.14981 2.48187 2.76371 3.02545 3.32363 3.38812 3.44199 3.54529 4.09033 4.43356 4.46770 4.60332 4.61796 4.80963 4.84593 4.85936 4.91041 5.00207 5.13648 5.15264 5.17439 5.28622 5.33614 5.35508 5.43825 5.50869 5.60281 5.71467 5.75464 5.78025 5.93065 6.00644 6.10900 6.12924 6.15511 6.19790 6.30691 6.40582 6.60384 6.71282 6.82027 6.98894 7.10558 7.12254 7.24756 7.34562 7.42860 7.59937 7.96637 8.04846 8.11094 8.34356 8.39166 9.05749 9.61383 11.08083 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.002449 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.638649 B =11432.198299 C =13255.569703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.109 3.891 4 C -0.135 4.135 5 C -0.107 4.107 6 C 0.113 3.887 7 N -0.676 5.676 8 C 0.518 3.482 9 O -0.493 6.493 10 C 0.067 3.933 11 H 0.107 0.893 12 C -0.185 4.185 13 N -0.514 5.514 14 C 0.046 3.954 15 C 0.069 3.931 16 N -0.544 5.544 17 C 0.187 3.813 18 C -0.546 4.546 19 H 0.060 0.940 20 C 0.064 3.936 21 N -0.893 5.893 22 Si 0.888 3.112 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.063 3.937 27 C 0.059 3.941 28 C -0.079 4.079 29 C -0.188 4.188 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.408 0.592 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.031 0.969 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.025 0.975 44 H 0.035 0.965 45 H 0.261 0.739 46 H 0.045 0.955 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.040 0.960 50 H 0.144 0.856 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.696 -21.495 15.175 28.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.063 3.937 4 C -0.154 4.154 5 C -0.128 4.128 6 C 0.019 3.981 7 N -0.323 5.323 8 C 0.305 3.695 9 O -0.365 6.365 10 C -0.046 4.046 11 H 0.125 0.875 12 C -0.244 4.244 13 N -0.238 5.238 14 C -0.082 4.082 15 C -0.059 4.059 16 N -0.269 5.269 17 C 0.061 3.939 18 C -0.585 4.585 19 H 0.079 0.921 20 C -0.139 4.139 21 N -0.532 5.532 22 Si 0.716 3.284 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.066 4.066 27 C -0.069 4.069 28 C -0.099 4.099 29 C -0.207 4.207 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.244 0.756 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.111 0.889 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.043 0.957 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.058 0.942 50 H 0.162 0.838 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.916 -21.565 14.585 27.858 hybrid contribution -0.921 0.311 0.460 1.075 sum 8.995 -21.254 15.046 27.550 Atomic orbital electron populations 1.23060 0.78343 1.03865 1.01568 1.86057 1.21415 1.26912 1.88993 1.19023 0.92355 0.84186 0.98101 1.20157 0.91306 0.97988 1.05935 1.20695 0.99644 0.90408 1.02003 1.17652 0.91859 0.84670 1.03921 1.43534 1.27484 1.08723 1.52552 1.20817 0.86123 0.85070 0.77479 1.90687 1.20439 1.82158 1.43257 1.21601 0.91615 0.90852 1.00495 0.87525 1.22435 0.96516 1.03245 1.02169 1.62136 1.46070 1.01226 1.14399 1.22589 0.98930 1.00226 0.86417 1.21890 0.96355 0.88813 0.98885 1.62722 1.49588 1.03475 1.11111 1.19730 0.90155 0.90434 0.93567 1.21797 0.93870 1.27442 1.15402 0.92150 1.24963 0.98889 0.95183 0.94818 1.69948 1.33883 1.28895 1.20471 0.86647 0.85089 0.78493 0.78144 1.20716 1.21221 1.19832 1.21930 0.98356 0.95987 0.90318 1.22278 0.96581 0.88418 0.99583 1.21155 0.93236 0.98355 0.97125 1.21190 1.00267 0.91775 1.07480 0.92484 0.88294 0.92632 0.84926 0.85054 0.75633 0.90708 0.91993 0.91352 0.95103 0.88925 0.92910 0.91462 0.95728 0.94729 0.92917 0.93715 0.91376 0.91323 0.94232 0.83849 0.85156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.14 10.50 -19.66 -0.21 -3.34 16 3 C 0.11 1.13 6.69 -39.22 -0.26 0.87 16 4 C -0.13 -1.24 9.98 -39.46 -0.39 -1.64 16 5 C -0.11 -0.93 9.96 -39.41 -0.39 -1.32 16 6 C 0.11 1.19 6.29 -83.62 -0.53 0.66 16 7 N -0.68 -6.23 5.20 -9.83 -0.05 -6.28 16 8 C 0.52 6.45 6.69 -10.98 -0.07 6.37 16 9 O -0.49 -8.18 11.40 5.55 0.06 -8.12 16 10 C 0.07 0.76 2.77 -68.87 -0.19 0.57 16 11 H 0.11 0.98 8.11 -51.93 -0.42 0.56 16 12 C -0.18 -1.70 8.39 37.16 0.31 -1.38 16 13 N -0.51 -8.03 4.49 -227.88 -1.02 -9.05 16 14 C 0.05 0.80 4.70 -3.77 -0.02 0.78 16 15 C 0.07 1.48 5.09 -3.77 -0.02 1.46 16 16 N -0.54 -12.04 4.92 -235.90 -1.16 -13.20 16 17 C 0.19 4.93 5.23 -4.98 -0.03 4.90 16 18 C -0.55 -15.42 7.73 -34.44 -0.27 -15.69 16 19 H 0.06 1.73 5.84 -52.49 -0.31 1.42 16 20 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16 21 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 22 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.06 1.23 5.40 -3.76 -0.02 1.21 16 27 C 0.06 0.90 5.25 -3.77 -0.02 0.88 16 28 C -0.08 -0.95 8.69 -39.41 -0.34 -1.29 16 29 C -0.19 -2.02 9.03 -39.46 -0.36 -2.37 16 30 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.31 7.66 -51.93 -0.40 -0.08 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.41 2.31 8.37 -40.82 -0.34 1.97 16 36 H 0.07 0.69 6.59 -51.93 -0.34 0.35 16 37 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 38 H 0.07 0.75 6.45 -51.93 -0.34 0.41 16 39 H 0.03 0.52 6.46 -51.93 -0.34 0.18 16 40 H 0.09 1.69 5.40 -51.93 -0.28 1.41 16 41 H 0.05 1.27 6.18 -51.92 -0.32 0.95 16 42 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.02 0.68 7.96 -51.93 -0.41 0.27 16 44 H 0.03 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.04 0.98 7.37 -51.93 -0.38 0.60 16 47 H 0.07 1.28 8.04 -51.93 -0.42 0.86 16 48 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 49 H 0.04 0.57 6.59 -51.93 -0.34 0.23 16 50 H 0.14 1.98 6.27 -52.49 -0.33 1.65 16 51 H 0.13 1.19 6.29 -52.49 -0.33 0.86 16 LS Contribution 393.67 15.07 5.93 5.93 Total: -1.00 -33.79 393.67 -10.19 -43.98 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.76 Total: 2.11 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -1.70 Total: -3.09 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -1.50 Total: -54.56 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.14 Total: -11.46 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.79 -10.19 -43.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174355.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.291 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds