Wall clock time and date at job start Wed Apr 1 2020 04:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35973 * 117.00025 * 2 1 4 4 C 1.38717 * 119.98573 * 179.97438 * 3 2 1 5 5 C 1.38084 * 120.01919 * 180.02562 * 4 3 2 6 6 C 1.38855 * 119.98225 * 359.97438 * 5 4 3 7 7 N 1.40103 * 120.01321 * 179.97438 * 6 5 4 8 8 C 1.34778 * 119.99624 * 144.82497 * 7 6 5 9 9 O 1.21290 * 120.00389 * 4.03344 * 8 7 6 10 10 C 1.50701 * 119.99636 * 184.03444 * 8 7 6 11 11 H 1.09000 * 109.47425 * 299.99460 * 10 8 7 12 12 C 1.52997 * 109.47356 * 59.99655 * 10 8 7 13 13 N 1.46900 * 109.47136 * 179.97438 * 10 8 7 14 14 C 1.46955 * 110.99992 * 298.79856 * 13 10 8 15 15 C 1.53049 * 109.36745 * 176.81226 * 14 13 10 16 16 N 1.46957 * 109.36842 * 58.40069 * 15 14 13 17 17 C 1.46899 * 111.00194 * 176.81712 * 16 15 14 18 18 C 1.50693 * 109.47262 * 50.29847 * 17 16 15 19 19 H 1.07996 * 120.00129 * 5.38269 * 18 17 16 20 20 C 1.37884 * 119.99647 * 185.38961 * 18 17 16 21 21 N 1.31507 * 119.99997 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99753 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47480 * 89.99493 * 22 20 18 24 24 H 1.48502 * 109.47097 * 209.99731 * 22 20 18 25 25 H 1.48506 * 109.47256 * 329.99290 * 22 20 18 26 26 C 1.46965 * 110.87427 * 300.68170 * 16 15 14 27 27 C 1.46957 * 111.00505 * 174.99945 * 13 10 8 28 28 C 1.38853 * 119.96818 * 0.24542 * 6 5 4 29 29 C 1.38088 * 119.98506 * 359.52302 * 28 6 5 30 30 H 1.09003 * 109.46967 * 60.00241 * 1 2 3 31 31 H 1.08994 * 109.47139 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47008 * 300.00766 * 1 2 3 33 33 H 1.08001 * 119.99051 * 0.02562 * 4 3 2 34 34 H 1.07994 * 120.01305 * 179.97438 * 5 4 3 35 35 H 0.96998 * 120.00261 * 324.81893 * 7 6 5 36 36 H 1.09006 * 109.47344 * 179.97438 * 12 10 8 37 37 H 1.08997 * 109.47664 * 300.00116 * 12 10 8 38 38 H 1.09000 * 109.47158 * 60.00326 * 12 10 8 39 39 H 1.09001 * 109.48784 * 296.78090 * 14 13 10 40 40 H 1.08999 * 109.49117 * 56.84050 * 14 13 10 41 41 H 1.09007 * 109.48610 * 298.43109 * 15 14 13 42 42 H 1.09003 * 109.49355 * 178.37175 * 15 14 13 43 43 H 1.08997 * 109.46614 * 170.29878 * 17 16 15 44 44 H 1.09005 * 109.46809 * 290.29503 * 17 16 15 45 45 H 0.97004 * 119.99884 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.49098 * 299.34717 * 26 16 15 47 47 H 1.09003 * 109.48140 * 179.28486 * 26 16 15 48 48 H 1.09004 * 109.48331 * 303.15715 * 27 13 10 49 49 H 1.09005 * 109.48581 * 63.19459 * 27 13 10 50 50 H 1.07997 * 120.00390 * 179.74135 * 28 6 5 51 51 H 1.07997 * 119.99361 * 180.20981 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4317 1.2838 0.0005 5 6 4.0593 2.5137 0.0011 6 6 3.3033 3.6785 0.0005 7 7 3.9395 4.9268 0.0016 8 6 3.3961 5.9605 -0.6711 9 8 2.3204 5.8310 -1.2164 10 6 4.1251 7.2774 -0.7459 11 1 4.2743 7.6678 0.2608 12 6 5.4832 7.0710 -1.4194 13 7 3.3307 8.2330 -1.5293 14 6 3.1335 7.7519 -2.9038 15 6 2.2373 8.7342 -3.6617 16 7 2.8600 10.0653 -3.6570 17 6 2.0656 11.0209 -4.4404 18 6 0.6256 10.9563 -4.0009 19 1 0.3446 10.3387 -3.1607 20 6 -0.3332 11.6857 -4.6716 21 7 0.0090 12.4380 -5.6944 22 14 -2.1181 11.6062 -4.1263 23 1 -2.3750 12.6645 -3.1168 24 1 -3.0039 11.8158 -5.2997 25 1 -2.3945 10.2749 -3.5291 26 6 3.0571 10.5464 -2.2824 27 6 3.9534 9.5641 -1.5246 28 6 1.9167 3.6054 0.0046 29 6 1.2905 2.3748 -0.0008 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8899 33 1 4.0195 0.3778 0.0005 34 1 5.1378 2.5699 0.0019 35 1 4.7708 5.0471 0.4866 36 1 6.0103 8.0235 -1.4739 37 1 6.0729 6.3618 -0.8386 38 1 5.3340 6.6807 -2.4262 39 1 4.0985 7.6787 -3.4054 40 1 2.6598 6.7705 -2.8812 41 1 1.2630 8.7867 -3.1757 42 1 2.1133 8.3943 -4.6900 43 1 2.4492 12.0286 -4.2812 44 1 2.1342 10.7689 -5.4987 45 1 -0.6655 12.9515 -6.1660 46 1 2.0921 10.6196 -1.7808 47 1 3.5309 11.5278 -2.3051 48 1 4.0774 9.9039 -0.4963 49 1 4.9279 9.5114 -2.0102 50 1 1.3283 4.5110 0.0084 51 1 0.2120 2.3178 -0.0010 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611174355.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:25 Heat of formation + Delta-G solvation = -40.257949 kcal Electronic energy + Delta-G solvation = -30853.409782 eV Core-core repulsion = 26752.817287 eV Total energy + Delta-G solvation = -4100.592496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.89593 -40.88338 -39.86794 -38.33073 -36.91510 -35.49253 -34.60514 -32.20772 -32.01990 -31.74683 -29.99531 -28.90837 -27.96678 -26.84178 -25.34210 -24.50546 -24.01168 -23.35805 -22.60588 -21.27738 -20.34073 -19.20229 -18.66608 -18.38131 -18.03331 -17.15758 -16.89680 -16.63646 -16.55038 -16.39261 -15.88319 -15.79852 -15.49471 -15.42892 -15.06757 -14.79795 -14.71843 -14.66223 -14.33157 -13.96460 -13.75745 -13.70643 -13.49872 -13.33399 -13.07677 -12.89843 -12.83198 -12.70591 -12.65226 -12.40557 -12.32068 -12.14867 -11.94421 -11.87166 -11.78020 -11.69501 -11.33760 -10.94663 -10.63117 -10.48714 -9.99212 -9.24343 -9.00683 -8.72651 -8.17999 -6.36699 0.28775 0.35731 1.32764 1.33720 1.45234 1.58436 1.94622 2.35023 2.39472 2.78380 2.96901 3.06304 3.38615 3.62328 3.87563 3.91234 3.95703 4.08278 4.21669 4.23166 4.27066 4.35408 4.36075 4.40309 4.46878 4.49822 4.53734 4.58393 4.70177 4.72239 4.74076 4.83223 4.88322 4.97758 5.06778 5.11660 5.13904 5.16715 5.23640 5.30895 5.33540 5.33997 5.37839 5.46355 5.71653 5.84652 5.99205 6.03177 6.10124 6.26903 6.41383 6.51222 6.52788 6.83857 7.21186 7.34112 8.84462 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.002449 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.638649 B =11432.198299 C =13255.569703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.099 3.901 4 C -0.138 4.138 5 C -0.094 4.094 6 C 0.099 3.901 7 N -0.655 5.655 8 C 0.515 3.485 9 O -0.544 6.544 10 C 0.070 3.930 11 H 0.139 0.861 12 C -0.178 4.178 13 N -0.537 5.537 14 C 0.066 3.934 15 C 0.074 3.926 16 N -0.539 5.539 17 C 0.199 3.801 18 C -0.555 4.555 19 H 0.051 0.949 20 C 0.012 3.988 21 N -0.925 5.925 22 Si 0.956 3.044 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.275 1.275 26 C 0.060 3.940 27 C 0.071 3.929 28 C -0.102 4.102 29 C -0.199 4.199 30 H 0.055 0.945 31 H 0.122 0.878 32 H 0.061 0.939 33 H 0.154 0.846 34 H 0.168 0.832 35 H 0.428 0.572 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.048 0.952 39 H 0.043 0.957 40 H 0.084 0.916 41 H 0.017 0.983 42 H 0.051 0.949 43 H 0.008 0.992 44 H 0.005 0.995 45 H 0.266 0.734 46 H 0.014 0.986 47 H 0.073 0.927 48 H 0.103 0.897 49 H 0.056 0.944 50 H 0.117 0.883 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.839 -23.082 17.366 31.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.246 6.246 3 C 0.054 3.946 4 C -0.157 4.157 5 C -0.114 4.114 6 C 0.005 3.995 7 N -0.303 5.303 8 C 0.303 3.697 9 O -0.420 6.420 10 C -0.042 4.042 11 H 0.157 0.843 12 C -0.236 4.236 13 N -0.262 5.262 14 C -0.062 4.062 15 C -0.055 4.055 16 N -0.263 5.263 17 C 0.072 3.928 18 C -0.594 4.594 19 H 0.069 0.931 20 C -0.187 4.187 21 N -0.564 5.564 22 Si 0.781 3.219 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.200 1.200 26 C -0.069 4.069 27 C -0.056 4.056 28 C -0.122 4.122 29 C -0.218 4.218 30 H 0.074 0.926 31 H 0.140 0.860 32 H 0.080 0.920 33 H 0.172 0.828 34 H 0.185 0.815 35 H 0.268 0.732 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.102 0.898 41 H 0.035 0.965 42 H 0.069 0.931 43 H 0.026 0.974 44 H 0.023 0.977 45 H 0.075 0.925 46 H 0.033 0.967 47 H 0.092 0.908 48 H 0.121 0.879 49 H 0.074 0.926 50 H 0.135 0.865 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.110 -23.172 16.823 31.091 hybrid contribution -1.585 0.724 -0.186 1.752 sum 10.526 -22.448 16.636 29.858 Atomic orbital electron populations 1.23289 0.76928 1.05485 1.01820 1.86041 1.22981 1.26635 1.88912 1.19251 0.93124 0.84168 0.98092 1.20541 0.91031 0.99164 1.04970 1.21018 1.01220 0.89167 0.99960 1.17802 0.91491 0.85734 1.04475 1.43289 1.27733 1.07636 1.51639 1.21108 0.85544 0.85980 0.77027 1.90688 1.22691 1.82997 1.45622 1.21740 0.91772 0.89241 1.01403 0.84335 1.22398 0.95277 1.04591 1.01376 1.61976 1.48424 1.02463 1.13290 1.22233 0.98182 0.98166 0.87579 1.21819 0.95843 0.89493 0.98365 1.62665 1.48028 1.02906 1.12673 1.19406 0.90147 0.90533 0.92670 1.21958 0.95031 1.27237 1.15167 0.93076 1.25784 1.03298 0.94765 0.94849 1.70053 1.35429 1.29552 1.21401 0.85595 0.79798 0.78455 0.78085 1.19573 1.20226 1.20007 1.22046 0.98091 0.98043 0.88703 1.22187 0.95585 0.87028 1.00815 1.21077 0.94301 0.97799 0.99030 1.21266 1.00806 0.91784 1.07977 0.92650 0.86021 0.92007 0.82821 0.81486 0.73225 0.90037 0.88231 0.93289 0.93929 0.89770 0.96493 0.93057 0.97415 0.97683 0.92538 0.96716 0.90838 0.87907 0.92587 0.86485 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -6.17 10.50 -93.25 -0.98 -7.15 16 3 C 0.10 1.98 6.69 22.50 0.15 2.13 16 4 C -0.14 -2.23 9.98 22.35 0.22 -2.01 16 5 C -0.09 -1.34 9.96 22.38 0.22 -1.12 16 6 C 0.10 1.93 6.29 38.11 0.24 2.17 16 7 N -0.65 -10.42 5.20 -303.39 -1.58 -12.00 16 8 C 0.52 12.07 6.69 87.66 0.59 12.65 16 9 O -0.54 -18.43 11.40 -3.06 -0.03 -18.47 16 10 C 0.07 1.37 2.77 44.17 0.12 1.50 16 11 H 0.14 1.90 8.11 -2.39 -0.02 1.88 16 12 C -0.18 -2.54 8.39 71.98 0.60 -1.93 16 13 N -0.54 -16.06 4.49 -874.88 -3.92 -19.98 16 14 C 0.07 2.33 4.70 86.31 0.41 2.74 16 15 C 0.07 3.30 5.09 86.31 0.44 3.74 16 16 N -0.54 -24.63 4.92 -900.26 -4.43 -29.05 16 17 C 0.20 11.04 5.23 85.55 0.45 11.49 16 18 C -0.56 -32.68 7.73 25.60 0.20 -32.48 16 19 H 0.05 3.07 5.84 -2.91 -0.02 3.05 16 20 C 0.01 0.73 5.46 84.66 0.46 1.19 16 21 N -0.92 -56.79 13.29 21.45 0.28 -56.50 16 22 Si 0.96 46.39 29.54 68.60 2.03 48.42 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 26 C 0.06 2.35 5.40 86.31 0.47 2.81 16 27 C 0.07 1.99 5.25 86.31 0.45 2.45 16 28 C -0.10 -2.51 8.69 22.38 0.19 -2.31 16 29 C -0.20 -4.36 9.03 22.35 0.20 -4.16 16 30 H 0.05 0.69 7.66 -2.39 -0.02 0.67 16 31 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 33 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.17 1.14 8.06 -2.91 -0.02 1.11 16 35 H 0.43 3.05 8.37 -92.71 -0.78 2.27 16 36 H 0.08 1.11 6.59 -2.38 -0.02 1.10 16 37 H 0.10 0.69 7.66 -2.39 -0.02 0.67 16 38 H 0.05 0.92 6.45 -2.39 -0.02 0.91 16 39 H 0.04 1.39 6.46 -2.39 -0.02 1.38 16 40 H 0.08 3.17 5.40 -2.39 -0.01 3.16 16 41 H 0.02 0.87 6.18 -2.38 -0.01 0.85 16 42 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.01 0.45 7.96 -2.39 -0.02 0.43 16 44 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 45 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 46 H 0.01 0.66 7.37 -2.39 -0.02 0.64 16 47 H 0.07 2.75 8.04 -2.39 -0.02 2.73 16 48 H 0.10 2.24 8.12 -2.38 -0.02 2.22 16 49 H 0.06 1.42 6.59 -2.38 -0.02 1.41 16 50 H 0.12 3.49 6.27 -2.91 -0.02 3.47 16 51 H 0.14 2.61 6.29 -2.91 -0.02 2.59 16 Total: -1.00 -78.40 393.67 -1.93 -80.33 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.18 Total: 14.21 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 6.53 Total: 0.20 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -9.65 Total: -117.54 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -1.01 Total: -25.62 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -78.40 -1.93 -80.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174355.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.071 kcal (2) G-P(sol) polarization free energy of solvation -78.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds