Wall clock time and date at job start Wed Apr 1 2020 06:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46896 * 109.47379 * 2 1 4 4 C 1.46847 * 110.99785 * 169.99898 * 3 2 1 5 5 C 1.53039 * 109.51943 * 185.84070 * 4 3 2 6 6 C 1.53116 * 109.28232 * 300.82319 * 5 4 3 7 7 C 1.52997 * 109.52580 * 177.56379 * 6 5 4 8 8 N 1.46504 * 109.47298 * 175.12816 * 7 6 5 9 9 C 1.34770 * 119.99986 * 180.02562 * 8 7 6 10 10 O 1.21581 * 120.00402 * 359.97438 * 9 8 7 11 11 N 1.34786 * 119.99855 * 179.97438 * 9 8 7 12 12 C 1.39944 * 119.99743 * 174.72987 * 11 9 8 13 13 C 1.38960 * 120.03726 * 326.33961 * 12 11 9 14 14 C 1.38156 * 120.06534 * 180.02562 * 13 12 11 15 15 C 1.38174 * 120.13776 * 359.72153 * 14 13 12 16 16 C 1.38905 * 120.06764 * 0.55305 * 15 14 13 17 17 O 1.35748 * 120.02872 * 179.71950 * 16 15 14 18 18 C 1.34836 * 116.99697 * 173.82592 * 17 16 15 19 19 H 1.07996 * 119.99847 * 354.58946 * 18 17 16 20 20 C 1.38648 * 119.99925 * 174.59241 * 18 17 16 21 21 N 1.31559 * 120.00352 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00371 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47056 * 89.99766 * 22 20 18 24 24 H 1.48493 * 109.47318 * 210.00084 * 22 20 18 25 25 H 1.48500 * 109.46925 * 330.00192 * 22 20 18 26 26 C 1.38706 * 120.03321 * 146.35995 * 12 11 9 27 27 C 1.53113 * 109.21354 * 57.62090 * 6 5 4 28 28 C 1.46842 * 111.00255 * 294.21190 * 3 2 1 29 29 H 1.08999 * 109.46986 * 299.99942 * 1 2 3 30 30 H 1.09002 * 109.47018 * 59.99625 * 1 2 3 31 31 H 1.08996 * 109.47507 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46986 * 240.00058 * 2 1 3 33 33 H 1.09002 * 109.47018 * 120.00375 * 2 1 3 34 34 H 1.08996 * 109.46081 * 65.83010 * 4 3 2 35 35 H 1.09002 * 109.46220 * 305.85240 * 4 3 2 36 36 H 1.08999 * 109.50318 * 180.88066 * 5 4 3 37 37 H 1.09006 * 109.50657 * 60.76501 * 5 4 3 38 38 H 1.09012 * 109.52047 * 297.68910 * 6 5 4 39 39 H 1.08998 * 109.47494 * 55.12276 * 7 6 5 40 40 H 1.08999 * 109.46674 * 295.12050 * 7 6 5 41 41 H 0.97002 * 119.99797 * 359.97438 * 8 7 6 42 42 H 0.96993 * 119.99962 * 354.73548 * 11 9 8 43 43 H 1.07995 * 119.96528 * 0.02562 * 13 12 11 44 44 H 1.07998 * 119.93109 * 180.02562 * 14 13 12 45 45 H 1.07998 * 119.96184 * 180.27952 * 15 14 13 46 46 H 0.96993 * 120.00734 * 179.97438 * 21 20 18 47 47 H 1.08002 * 120.06323 * 0.02562 * 26 12 11 48 48 H 1.09003 * 109.50509 * 62.31869 * 27 6 5 49 49 H 1.09000 * 109.50756 * 182.43679 * 27 6 5 50 50 H 1.09000 * 109.46327 * 294.18035 * 28 3 2 51 51 H 1.09005 * 109.46528 * 54.15439 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4681 1.4309 0.2381 5 6 3.9176 2.8873 0.3763 6 6 3.5677 3.6482 -0.9056 7 6 3.9597 5.1189 -0.7503 8 7 3.7326 5.8211 -2.0159 9 6 4.0097 7.1362 -2.1160 10 8 4.4478 7.7400 -1.1560 11 7 3.8012 7.7821 -3.2806 12 6 3.9836 9.1676 -3.3546 13 6 3.6893 9.9675 -2.2571 14 6 3.8686 11.3355 -2.3297 15 6 4.3462 11.9119 -3.4910 16 6 4.6368 11.1183 -4.5934 17 8 5.1006 11.6860 -5.7359 18 6 5.4838 10.8508 -6.7226 19 1 5.4968 9.7844 -6.5528 20 6 5.8610 11.3612 -7.9554 21 7 6.2354 10.5464 -8.9180 22 14 5.8379 13.2057 -8.2494 23 1 7.1574 13.7816 -7.8856 24 1 5.5585 13.4750 -9.6828 25 1 4.7792 13.8270 -7.4136 26 6 4.4579 9.7439 -4.5237 27 6 2.0612 3.5440 -1.1581 28 6 1.6652 2.0685 -1.2503 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9888 0.9682 -0.6002 35 1 3.7028 0.8899 1.1548 36 1 4.9950 2.9218 0.5374 37 1 3.4075 3.3469 1.2229 38 1 4.1089 3.2138 -1.7463 39 1 5.0136 5.1876 -0.4807 40 1 3.3539 5.5757 0.0323 41 1 3.3834 5.3393 -2.7820 42 1 3.5248 7.2866 -4.0672 43 1 3.3201 9.5194 -1.3465 44 1 3.6396 11.9551 -1.4752 45 1 4.4896 12.9810 -3.5431 46 1 6.4990 10.9033 -9.7805 47 1 4.6866 9.1244 -5.3782 48 1 1.5210 4.0141 -0.3363 49 1 1.8131 4.0474 -2.0925 50 1 2.1943 1.6027 -2.0816 51 1 0.5904 1.9907 -1.4146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726275544.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:06:51 Heat of formation + Delta-G solvation = -30.945127 kcal Electronic energy + Delta-G solvation = -29600.697959 eV Core-core repulsion = 25500.509297 eV Total energy + Delta-G solvation = -4100.188661 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.47325 -39.66161 -38.84301 -36.87762 -35.93921 -34.21986 -33.64002 -32.33209 -31.33716 -30.62521 -29.39048 -28.67383 -26.69589 -25.18244 -23.94486 -23.24386 -22.00308 -21.73984 -21.48317 -20.50365 -20.03186 -18.54006 -17.78155 -17.60791 -16.50586 -16.10309 -15.83962 -15.52475 -15.20887 -14.99015 -14.90291 -14.70120 -14.37756 -14.26795 -14.03996 -13.81342 -13.67826 -13.51852 -13.36028 -13.05958 -12.80549 -12.53835 -12.27299 -12.18851 -12.12815 -12.03178 -11.68861 -11.60045 -11.48120 -11.19564 -11.05914 -10.95627 -10.83878 -10.67938 -10.62628 -10.29084 -10.02230 -9.65874 -9.48303 -9.14252 -8.83227 -8.75846 -7.74629 -7.24253 -6.41221 -4.08256 2.01125 2.32729 2.70168 3.23284 3.26645 3.33169 3.41513 3.43000 4.18847 4.24951 4.27304 4.32599 4.40758 4.54957 4.62068 4.74914 4.84400 4.89423 4.91458 5.00337 5.04115 5.09526 5.13979 5.16998 5.29296 5.33601 5.41021 5.45937 5.51051 5.57848 5.62014 5.68348 5.71497 5.78152 5.80695 5.95646 6.01371 6.03493 6.19746 6.22690 6.37562 6.47563 6.65390 6.66807 6.75639 6.95161 7.19281 7.24674 7.29352 7.64125 7.79657 8.02292 8.05765 8.65283 8.94527 9.57583 10.66590 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019032 B = 0.001738 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.830256 B =16104.346450 C =16910.173393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.057 3.943 5 C -0.108 4.108 6 C -0.101 4.101 7 C 0.146 3.854 8 N -0.746 5.746 9 C 0.703 3.297 10 O -0.571 6.571 11 N -0.683 5.683 12 C 0.199 3.801 13 C -0.197 4.197 14 C -0.064 4.064 15 C -0.203 4.203 16 C 0.175 3.825 17 O -0.217 6.217 18 C -0.388 4.388 19 H 0.104 0.896 20 C 0.063 3.937 21 N -0.882 5.882 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.246 4.246 27 C -0.112 4.112 28 C 0.053 3.947 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.395 0.605 42 H 0.403 0.597 43 H 0.122 0.878 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.279 0.721 47 H 0.135 0.865 48 H 0.075 0.925 49 H 0.068 0.932 50 H 0.032 0.968 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.818 -20.467 16.324 27.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.077 4.077 3 N -0.265 5.265 4 C -0.071 4.071 5 C -0.147 4.147 6 C -0.120 4.120 7 C 0.021 3.979 8 N -0.402 5.402 9 C 0.404 3.596 10 O -0.448 6.448 11 N -0.329 5.329 12 C 0.105 3.895 13 C -0.218 4.218 14 C -0.083 4.083 15 C -0.222 4.222 16 C 0.122 3.878 17 O -0.122 6.122 18 C -0.464 4.464 19 H 0.122 0.878 20 C -0.140 4.140 21 N -0.520 5.520 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.183 1.183 26 C -0.268 4.268 27 C -0.150 4.150 28 C -0.075 4.075 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.229 0.771 42 H 0.238 0.762 43 H 0.140 0.860 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.089 0.911 47 H 0.153 0.847 48 H 0.094 0.906 49 H 0.086 0.914 50 H 0.050 0.950 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.541 -19.510 17.329 27.785 hybrid contribution 0.245 -0.479 -1.866 1.942 sum -9.296 -19.990 15.464 26.928 Atomic orbital electron populations 1.21814 0.94781 1.01565 1.02605 1.22059 0.96231 0.88778 1.00677 1.61962 1.13841 1.15451 1.35213 1.22068 0.87291 0.97073 1.00664 1.21549 1.01136 0.94422 0.97567 1.21464 0.96792 0.94611 0.99113 1.21213 1.01424 0.90082 0.85143 1.45117 1.71436 1.08336 1.15358 1.15889 0.78799 0.81473 0.83488 1.90946 1.50276 1.66236 1.37295 1.42594 1.71490 1.07107 1.11754 1.17190 0.97006 0.80361 0.94919 1.20634 1.09252 0.93097 0.98829 1.20527 0.97457 0.94035 0.96296 1.20229 1.10153 0.99412 0.92452 1.18789 0.91456 0.90551 0.86979 1.83613 1.71331 1.36059 1.21216 1.20719 1.44122 0.91243 0.90272 0.87846 1.24460 0.95690 1.00087 0.93788 1.69641 1.43185 1.35354 1.03820 0.86174 0.79654 0.83687 0.77365 1.19878 1.20898 1.18304 1.20894 1.10962 0.95671 0.99270 1.21664 0.95215 0.95572 1.02534 1.22147 1.01025 0.94481 0.89865 0.91768 0.92603 0.92331 0.95054 0.90819 0.94904 0.90589 0.90955 0.90495 0.90738 0.91509 0.91344 0.77118 0.76200 0.86032 0.86475 0.86428 0.91115 0.84711 0.90616 0.91367 0.94971 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.84 37.16 0.37 -0.41 16 2 C 0.05 0.29 5.68 -3.82 -0.02 0.27 16 3 N -0.54 -3.65 4.66 -234.67 -1.09 -4.74 16 4 C 0.06 0.35 5.46 -3.83 -0.02 0.33 16 5 C -0.11 -0.68 5.38 -26.65 -0.14 -0.82 16 6 C -0.10 -0.68 2.29 -90.50 -0.21 -0.89 16 7 C 0.15 1.35 5.07 -4.04 -0.02 1.33 16 8 N -0.75 -7.82 5.31 -65.23 -0.35 -8.17 16 9 C 0.70 10.72 8.30 -86.92 -0.72 10.00 16 10 O -0.57 -10.95 14.05 5.29 0.07 -10.87 16 11 N -0.68 -10.49 5.35 -14.24 -0.08 -10.57 16 12 C 0.20 3.83 6.27 -83.71 -0.52 3.30 16 13 C -0.20 -3.76 8.65 -39.34 -0.34 -4.10 16 14 C -0.06 -1.17 10.03 -39.64 -0.40 -1.57 16 15 C -0.20 -4.13 9.99 -39.36 -0.39 -4.52 16 16 C 0.17 4.08 6.64 -39.14 -0.26 3.82 16 17 O -0.22 -5.73 8.58 0.04 0.00 -5.73 16 18 C -0.39 -10.86 9.90 30.88 0.31 -10.56 16 19 H 0.10 2.95 5.53 -52.49 -0.29 2.66 16 20 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 21 N -0.88 -25.28 13.96 55.48 0.77 -24.51 16 22 Si 0.91 21.66 28.62 -169.99 -4.86 16.80 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 26 C -0.25 -5.33 9.04 -39.21 -0.35 -5.68 16 27 C -0.11 -0.74 5.23 -26.65 -0.14 -0.88 16 28 C 0.05 0.34 5.29 -3.83 -0.02 0.32 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.30 6.43 -51.93 -0.33 -0.04 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.03 0.18 8.12 -51.93 -0.42 -0.24 16 33 H 0.07 0.39 7.99 -51.93 -0.41 -0.03 16 34 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.08 0.42 8.02 -51.93 -0.42 0.01 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.39 3.07 7.70 -40.82 -0.31 2.75 16 42 H 0.40 4.94 8.83 -40.82 -0.36 4.58 16 43 H 0.12 2.30 6.43 -52.49 -0.34 1.96 16 44 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 45 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 46 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.14 2.99 5.72 -52.49 -0.30 2.69 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.41 7.26 -51.93 -0.38 0.04 16 50 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 51 H 0.08 0.49 6.21 -51.93 -0.32 0.16 16 LS Contribution 404.49 15.07 6.10 6.10 Total: -1.00 -32.61 404.49 -10.52 -43.13 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -8.10 Total: 6.97 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -2.99 Total: -8.40 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.74 Total: -47.99 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.07 Total: -16.60 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.86 Total: 16.80 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.61 -10.52 -43.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726275544.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.183 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds