Wall clock time and date at job start Wed Apr 1 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46896 * 109.47379 * 2 1 4 4 C 1.46847 * 110.99785 * 169.99898 * 3 2 1 5 5 C 1.53039 * 109.51943 * 185.84070 * 4 3 2 6 6 C 1.53116 * 109.28232 * 300.82319 * 5 4 3 7 7 C 1.52997 * 109.52580 * 177.56379 * 6 5 4 8 8 N 1.46504 * 109.47298 * 175.12816 * 7 6 5 9 9 C 1.34770 * 119.99986 * 180.02562 * 8 7 6 10 10 O 1.21581 * 120.00402 * 359.97438 * 9 8 7 11 11 N 1.34786 * 119.99855 * 179.97438 * 9 8 7 12 12 C 1.39944 * 119.99743 * 174.72987 * 11 9 8 13 13 C 1.38960 * 120.03726 * 326.33961 * 12 11 9 14 14 C 1.38156 * 120.06534 * 180.02562 * 13 12 11 15 15 C 1.38174 * 120.13776 * 359.72153 * 14 13 12 16 16 C 1.38905 * 120.06764 * 0.55305 * 15 14 13 17 17 O 1.35748 * 120.02872 * 179.71950 * 16 15 14 18 18 C 1.34836 * 116.99697 * 173.82592 * 17 16 15 19 19 H 1.07996 * 119.99847 * 354.58946 * 18 17 16 20 20 C 1.38648 * 119.99925 * 174.59241 * 18 17 16 21 21 N 1.31559 * 120.00352 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00371 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47056 * 89.99766 * 22 20 18 24 24 H 1.48493 * 109.47318 * 210.00084 * 22 20 18 25 25 H 1.48500 * 109.46925 * 330.00192 * 22 20 18 26 26 C 1.38706 * 120.03321 * 146.35995 * 12 11 9 27 27 C 1.53113 * 109.21354 * 57.62090 * 6 5 4 28 28 C 1.46842 * 111.00255 * 294.21190 * 3 2 1 29 29 H 1.08999 * 109.46986 * 299.99942 * 1 2 3 30 30 H 1.09002 * 109.47018 * 59.99625 * 1 2 3 31 31 H 1.08996 * 109.47507 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46986 * 240.00058 * 2 1 3 33 33 H 1.09002 * 109.47018 * 120.00375 * 2 1 3 34 34 H 1.08996 * 109.46081 * 65.83010 * 4 3 2 35 35 H 1.09002 * 109.46220 * 305.85240 * 4 3 2 36 36 H 1.08999 * 109.50318 * 180.88066 * 5 4 3 37 37 H 1.09006 * 109.50657 * 60.76501 * 5 4 3 38 38 H 1.09012 * 109.52047 * 297.68910 * 6 5 4 39 39 H 1.08998 * 109.47494 * 55.12276 * 7 6 5 40 40 H 1.08999 * 109.46674 * 295.12050 * 7 6 5 41 41 H 0.97002 * 119.99797 * 359.97438 * 8 7 6 42 42 H 0.96993 * 119.99962 * 354.73548 * 11 9 8 43 43 H 1.07995 * 119.96528 * 0.02562 * 13 12 11 44 44 H 1.07998 * 119.93109 * 180.02562 * 14 13 12 45 45 H 1.07998 * 119.96184 * 180.27952 * 15 14 13 46 46 H 0.96993 * 120.00734 * 179.97438 * 21 20 18 47 47 H 1.08002 * 120.06323 * 0.02562 * 26 12 11 48 48 H 1.09003 * 109.50509 * 62.31869 * 27 6 5 49 49 H 1.09000 * 109.50756 * 182.43679 * 27 6 5 50 50 H 1.09000 * 109.46327 * 294.18035 * 28 3 2 51 51 H 1.09005 * 109.46528 * 54.15439 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4681 1.4309 0.2381 5 6 3.9176 2.8873 0.3763 6 6 3.5677 3.6482 -0.9056 7 6 3.9597 5.1189 -0.7503 8 7 3.7326 5.8211 -2.0159 9 6 4.0097 7.1362 -2.1160 10 8 4.4478 7.7400 -1.1560 11 7 3.8012 7.7821 -3.2806 12 6 3.9836 9.1676 -3.3546 13 6 3.6893 9.9675 -2.2571 14 6 3.8686 11.3355 -2.3297 15 6 4.3462 11.9119 -3.4910 16 6 4.6368 11.1183 -4.5934 17 8 5.1006 11.6860 -5.7359 18 6 5.4838 10.8508 -6.7226 19 1 5.4968 9.7844 -6.5528 20 6 5.8610 11.3612 -7.9554 21 7 6.2354 10.5464 -8.9180 22 14 5.8379 13.2057 -8.2494 23 1 7.1574 13.7816 -7.8856 24 1 5.5585 13.4750 -9.6828 25 1 4.7792 13.8270 -7.4136 26 6 4.4579 9.7439 -4.5237 27 6 2.0612 3.5440 -1.1581 28 6 1.6652 2.0685 -1.2503 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9888 0.9682 -0.6002 35 1 3.7028 0.8899 1.1548 36 1 4.9950 2.9218 0.5374 37 1 3.4075 3.3469 1.2229 38 1 4.1089 3.2138 -1.7463 39 1 5.0136 5.1876 -0.4807 40 1 3.3539 5.5757 0.0323 41 1 3.3834 5.3393 -2.7820 42 1 3.5248 7.2866 -4.0672 43 1 3.3201 9.5194 -1.3465 44 1 3.6396 11.9551 -1.4752 45 1 4.4896 12.9810 -3.5431 46 1 6.4990 10.9033 -9.7805 47 1 4.6866 9.1244 -5.3782 48 1 1.5210 4.0141 -0.3363 49 1 1.8131 4.0474 -2.0925 50 1 2.1943 1.6027 -2.0816 51 1 0.5904 1.9907 -1.4146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726275544.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:06:50 Heat of formation + Delta-G solvation = -52.552380 kcal Electronic energy + Delta-G solvation = -29601.634920 eV Core-core repulsion = 25500.509297 eV Total energy + Delta-G solvation = -4101.125622 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.74817 -40.67199 -40.12441 -38.38909 -36.84935 -35.64946 -34.53601 -34.31623 -31.88031 -31.35332 -30.90610 -30.14393 -27.54203 -27.09697 -24.50188 -24.14223 -23.39633 -23.04316 -22.07751 -21.76789 -20.72993 -20.07128 -19.38930 -19.19677 -17.49116 -17.11894 -16.94632 -16.66896 -16.42627 -16.13395 -15.94545 -15.72480 -15.68530 -15.39604 -15.28976 -15.20016 -14.70899 -14.63676 -14.23423 -14.16509 -14.00665 -13.92860 -13.54307 -13.26483 -13.07003 -12.80553 -12.74288 -12.61897 -12.53461 -12.38498 -12.12115 -12.07341 -11.97054 -11.64271 -11.57749 -11.43926 -11.29463 -11.17211 -11.14077 -10.81230 -10.16818 -9.36301 -9.25151 -8.87762 -8.48522 -6.21093 0.44116 0.67441 1.34068 1.38200 1.53078 1.55750 2.04173 2.30040 2.79302 2.95911 3.09410 3.12512 3.17579 3.65650 3.76249 3.85461 4.12069 4.13301 4.28175 4.30541 4.33347 4.36806 4.44106 4.48868 4.57255 4.58594 4.61974 4.63757 4.69712 4.73899 4.82694 4.87396 4.90391 4.93287 4.98086 5.03043 5.13313 5.18943 5.23631 5.33494 5.35081 5.37569 5.39286 5.49528 5.51522 5.66528 5.76456 5.88793 5.99245 6.17869 6.18632 6.24552 6.86025 6.92159 7.43541 7.59641 8.62737 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019032 B = 0.001738 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.830256 B =16104.346450 C =16910.173393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 N -0.551 5.551 4 C 0.058 3.942 5 C -0.106 4.106 6 C -0.089 4.089 7 C 0.147 3.853 8 N -0.724 5.724 9 C 0.701 3.299 10 O -0.610 6.610 11 N -0.677 5.677 12 C 0.202 3.798 13 C -0.192 4.192 14 C -0.052 4.052 15 C -0.204 4.204 16 C 0.141 3.859 17 O -0.240 6.240 18 C -0.397 4.397 19 H 0.082 0.918 20 C 0.011 3.989 21 N -0.922 5.922 22 Si 0.969 3.031 23 H -0.267 1.267 24 H -0.269 1.269 25 H -0.261 1.261 26 C -0.256 4.256 27 C -0.109 4.109 28 C 0.054 3.946 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.078 0.922 34 H 0.033 0.967 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.411 0.589 42 H 0.418 0.582 43 H 0.130 0.870 44 H 0.159 0.841 45 H 0.134 0.866 46 H 0.284 0.716 47 H 0.119 0.881 48 H 0.065 0.935 49 H 0.074 0.926 50 H 0.033 0.967 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.745 -20.727 17.831 29.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 N -0.276 5.276 4 C -0.070 4.070 5 C -0.144 4.144 6 C -0.108 4.108 7 C 0.024 3.976 8 N -0.381 5.381 9 C 0.402 3.598 10 O -0.489 6.489 11 N -0.325 5.325 12 C 0.107 3.893 13 C -0.213 4.213 14 C -0.070 4.070 15 C -0.223 4.223 16 C 0.091 3.909 17 O -0.148 6.148 18 C -0.473 4.473 19 H 0.099 0.901 20 C -0.187 4.187 21 N -0.562 5.562 22 Si 0.791 3.209 23 H -0.192 1.192 24 H -0.193 1.193 25 H -0.186 1.186 26 C -0.278 4.278 27 C -0.147 4.147 28 C -0.074 4.074 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.248 0.752 42 H 0.255 0.745 43 H 0.148 0.852 44 H 0.177 0.823 45 H 0.152 0.848 46 H 0.094 0.906 47 H 0.137 0.863 48 H 0.084 0.916 49 H 0.093 0.907 50 H 0.051 0.949 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.503 -19.849 18.847 29.317 hybrid contribution 0.438 -0.578 -2.058 2.182 sum -10.066 -20.427 16.789 28.292 Atomic orbital electron populations 1.21786 0.94446 1.02107 1.02103 1.22098 0.96507 0.88308 1.00920 1.61988 1.14183 1.16095 1.35355 1.22071 0.87050 0.96832 1.01031 1.21532 1.01525 0.94470 0.96917 1.21375 0.97018 0.92693 0.99718 1.21295 1.00805 0.91372 0.84171 1.44995 1.69862 1.06699 1.16504 1.16035 0.78537 0.82601 0.82662 1.90915 1.52115 1.67459 1.38460 1.42492 1.71274 1.05954 1.12744 1.17227 0.95910 0.82175 0.94037 1.20927 1.08037 0.93655 0.98691 1.20973 0.95310 0.94115 0.96640 1.20530 1.09615 1.00199 0.91983 1.19330 0.92765 0.91763 0.87026 1.83558 1.73381 1.35895 1.21922 1.20671 1.44679 0.90735 0.91217 0.90076 1.25249 0.95484 1.04512 0.93482 1.69719 1.44843 1.37188 1.04483 0.85238 0.79602 0.78252 0.77789 1.19246 1.19334 1.18565 1.20853 1.11817 0.95317 0.99835 1.21633 0.94767 0.95826 1.02443 1.22125 1.01203 0.94182 0.89851 0.92493 0.92805 0.91314 0.95023 0.90336 0.94849 0.89927 0.90294 0.91126 0.90063 0.92383 0.92099 0.75214 0.74496 0.85249 0.82330 0.84762 0.90624 0.86289 0.91623 0.90710 0.94906 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.84 71.98 0.71 -0.63 16 2 C 0.05 0.50 5.68 86.31 0.49 0.99 16 3 N -0.55 -6.66 4.66 -896.35 -4.17 -10.84 16 4 C 0.06 0.62 5.46 86.33 0.47 1.09 16 5 C -0.11 -1.18 5.38 30.65 0.16 -1.01 16 6 C -0.09 -1.05 2.29 -10.72 -0.02 -1.08 16 7 C 0.15 2.55 5.07 86.38 0.44 2.98 16 8 N -0.72 -14.02 5.31 -478.54 -2.54 -16.56 16 9 C 0.70 20.49 8.30 179.05 1.49 21.98 16 10 O -0.61 -22.70 14.05 -3.97 -0.06 -22.75 16 11 N -0.68 -20.17 5.35 -317.23 -1.70 -21.87 16 12 C 0.20 7.61 6.27 38.13 0.24 7.85 16 13 C -0.19 -6.93 8.65 22.42 0.19 -6.74 16 14 C -0.05 -1.75 10.03 22.23 0.22 -1.53 16 15 C -0.20 -7.98 9.99 22.41 0.22 -7.75 16 16 C 0.14 6.64 6.64 22.56 0.15 6.79 16 17 O -0.24 -12.96 8.58 -22.78 -0.20 -13.15 16 18 C -0.40 -23.05 9.90 67.92 0.67 -22.37 16 19 H 0.08 4.91 5.53 -2.91 -0.02 4.89 16 20 C 0.01 0.64 5.49 84.83 0.47 1.11 16 21 N -0.92 -54.25 13.96 21.61 0.30 -53.95 16 22 Si 0.97 45.05 28.62 68.60 1.96 47.02 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 26 C -0.26 -11.30 9.04 22.51 0.20 -11.10 16 27 C -0.11 -1.26 5.23 30.65 0.16 -1.10 16 28 C 0.05 0.62 5.29 86.33 0.46 1.07 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.51 6.43 -2.39 -0.02 0.49 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.03 0.32 8.12 -2.39 -0.02 0.30 16 33 H 0.08 0.71 7.99 -2.39 -0.02 0.69 16 34 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.08 0.78 8.02 -2.39 -0.02 0.76 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.41 5.51 7.70 -92.71 -0.71 4.79 16 42 H 0.42 9.86 8.83 -92.71 -0.82 9.04 16 43 H 0.13 4.57 6.43 -2.91 -0.02 4.55 16 44 H 0.16 4.04 8.06 -2.91 -0.02 4.01 16 45 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 46 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 47 H 0.12 5.57 5.72 -2.91 -0.02 5.56 16 48 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.07 0.76 7.26 -2.39 -0.02 0.74 16 50 H 0.03 0.37 8.14 -2.39 -0.02 0.36 16 51 H 0.08 0.89 6.21 -2.38 -0.01 0.87 16 Total: -1.00 -71.52 404.49 -0.26 -71.78 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: -0.58 Total: 29.76 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 6.72 Total: -9.43 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -8.11 Total: -103.22 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -0.25 Total: -35.91 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.96 Total: 47.02 kcal Total: -71.52 -0.26 -71.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726275544.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.224 kcal (2) G-P(sol) polarization free energy of solvation -71.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds