Wall clock time and date at job start Wed Apr 1 2020 04:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47453 * 2 1 4 4 C 1.53002 * 109.47418 * 120.00275 * 2 1 3 5 5 O 1.42900 * 109.47029 * 54.99335 * 4 2 1 6 6 C 1.35898 * 116.99675 * 180.02562 * 5 4 2 7 7 C 1.38729 * 120.06098 * 359.72787 * 6 5 4 8 8 C 1.38139 * 119.94740 * 179.74106 * 7 6 5 9 9 C 1.38271 * 120.05506 * 0.51495 * 8 7 6 10 10 C 1.38261 * 120.10837 * 359.76164 * 9 8 7 11 11 C 1.38142 * 120.06000 * 359.97438 * 10 9 8 12 12 N 1.46508 * 109.47031 * 240.00200 * 2 1 3 13 13 C 1.34772 * 120.00120 * 84.99757 * 12 2 1 14 14 O 1.21588 * 119.99982 * 0.02562 * 13 12 2 15 15 N 1.34772 * 119.99921 * 180.02562 * 13 12 2 16 16 C 1.46502 * 120.00143 * 180.02562 * 15 13 12 17 17 C 1.53045 * 109.45742 * 275.02880 * 16 15 13 18 18 C 1.53197 * 109.31150 * 178.59926 * 17 16 15 19 19 N 1.46924 * 108.76240 * 54.65360 * 18 17 16 20 20 C 1.36939 * 120.62718 * 126.36504 * 19 18 17 21 21 H 1.07998 * 119.99883 * 208.02130 * 20 19 18 22 22 C 1.38815 * 120.00340 * 28.01245 * 20 19 18 23 23 N 1.31621 * 119.99616 * 17.53080 * 22 20 19 24 24 Si 1.86802 * 120.00306 * 197.52495 * 22 20 19 25 25 H 1.48503 * 109.46706 * 94.07149 * 24 22 20 26 26 H 1.48491 * 109.47234 * 214.06996 * 24 22 20 27 27 H 1.48504 * 109.47013 * 334.07124 * 24 22 20 28 28 C 1.46916 * 118.74082 * 306.38122 * 19 18 17 29 29 C 1.53036 * 109.46393 * 154.97133 * 16 15 13 30 30 H 1.09004 * 109.47237 * 59.99396 * 1 2 3 31 31 H 1.09007 * 109.47116 * 300.00046 * 1 2 3 32 32 H 1.09001 * 109.47453 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47130 * 174.99868 * 4 2 1 34 34 H 1.08998 * 109.46455 * 294.99851 * 4 2 1 35 35 H 1.08004 * 120.02330 * 359.97438 * 7 6 5 36 36 H 1.08000 * 119.97353 * 180.27868 * 8 7 6 37 37 H 1.07998 * 119.94224 * 179.74323 * 9 8 7 38 38 H 1.07998 * 119.96982 * 179.97438 * 10 9 8 39 39 H 1.08001 * 120.03003 * 179.97438 * 11 10 9 40 40 H 0.96998 * 119.99536 * 265.00032 * 12 2 1 41 41 H 0.96998 * 120.00568 * 0.02562 * 15 13 12 42 42 H 1.09006 * 109.46195 * 34.99316 * 16 15 13 43 43 H 1.08997 * 109.49572 * 298.56140 * 17 16 15 44 44 H 1.09001 * 109.49759 * 58.66096 * 17 16 15 45 45 H 1.08996 * 109.59838 * 294.86202 * 18 17 16 46 46 H 1.09002 * 109.69588 * 174.50599 * 18 17 16 47 47 H 0.97003 * 119.99911 * 179.97438 * 23 22 20 48 48 H 1.08994 * 109.58896 * 293.82326 * 28 19 18 49 49 H 1.09001 * 109.70443 * 173.46664 * 28 19 18 50 50 H 1.08994 * 109.50127 * 301.33614 * 29 16 15 51 51 H 1.09005 * 109.49519 * 61.40250 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.4701 -2.0304 1.3094 6 6 1.8226 -2.8086 2.3663 7 6 2.7033 -2.3245 3.3226 8 6 3.0558 -3.1156 4.3988 9 6 2.5399 -4.3930 4.5177 10 6 1.6665 -4.8799 3.5628 11 6 1.3066 -4.0907 2.4876 12 7 2.0183 -0.6906 -1.1963 13 6 2.1469 -0.0183 -2.3572 14 8 1.8582 1.1616 -2.4117 15 7 2.5957 -0.6537 -3.4577 16 6 2.7361 0.0772 -4.7196 17 6 1.3929 0.0908 -5.4531 18 6 1.5347 0.8856 -6.7551 19 7 2.6429 0.3194 -7.5361 20 6 2.4537 -0.0682 -8.8358 21 1 3.0605 -0.8555 -9.2582 22 6 1.4820 0.5506 -9.6103 23 7 0.9858 1.7118 -9.2394 24 14 0.8789 -0.2647 -11.1791 25 1 -0.3392 -1.0620 -10.8857 26 1 0.5574 0.7776 -12.1866 27 1 1.9388 -1.1580 -11.7118 28 6 3.9576 0.1767 -6.8962 29 6 3.7887 -0.6098 -5.5925 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1263 -0.7995 1.2055 34 1 1.7517 -0.1583 2.1369 35 1 3.1100 -1.3285 3.2278 36 1 3.7378 -2.7375 5.1459 37 1 2.8200 -5.0114 5.3576 38 1 1.2653 -5.8781 3.6577 39 1 0.6246 -4.4717 1.7419 40 1 2.2489 -1.6318 -1.1527 41 1 2.8257 -1.5950 -3.4145 42 1 3.0475 1.1013 -4.5134 43 1 1.0930 -0.9319 -5.6818 44 1 0.6382 0.5592 -4.8214 45 1 1.7459 1.9298 -6.5248 46 1 0.6107 0.8178 -7.3293 47 1 0.3071 2.1445 -9.7808 48 1 4.3665 1.1631 -6.6774 49 1 4.6339 -0.3599 -7.5616 50 1 4.7393 -0.6402 -5.0601 51 1 3.4662 -1.6261 -5.8194 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730584647.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:48 Heat of formation + Delta-G solvation = -24.427523 kcal Electronic energy + Delta-G solvation = -30051.737442 eV Core-core repulsion = 25951.831406 eV Total energy + Delta-G solvation = -4099.906037 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.65851 -39.90157 -38.11969 -37.40148 -35.42918 -34.27499 -32.33700 -31.49916 -31.05832 -30.07679 -29.84770 -29.04906 -27.20979 -24.98116 -23.31967 -22.77874 -22.26580 -22.13675 -21.00845 -20.48245 -19.43485 -18.71793 -18.09591 -16.99521 -16.64954 -16.38436 -16.11223 -15.72999 -15.02443 -14.93541 -14.85055 -14.53812 -14.25428 -13.85493 -13.78661 -13.65824 -13.48626 -13.43852 -12.99860 -12.89084 -12.76560 -12.43567 -12.29383 -12.00135 -11.96480 -11.45587 -11.37950 -11.33833 -11.15552 -11.09420 -10.88175 -10.72141 -10.34836 -10.18919 -10.06794 -9.93949 -9.71897 -9.51272 -9.42555 -9.16585 -8.61331 -8.58159 -8.35622 -6.65629 -5.75691 -3.18435 0.91939 1.03870 2.68314 2.84428 3.38365 3.39870 3.42363 3.46672 3.48148 4.24076 4.34145 4.43412 4.51913 4.53085 4.61752 4.71349 4.81323 4.97172 5.00297 5.14141 5.23093 5.30016 5.34205 5.43266 5.50074 5.54736 5.59024 5.69447 5.80207 5.88205 5.88540 5.98992 6.12424 6.13294 6.15912 6.28022 6.34340 6.41369 6.48413 6.50124 6.64095 6.69360 6.81065 6.94905 6.98956 7.00430 7.16344 7.42885 7.72317 7.82724 8.19556 8.48047 8.80878 9.23926 9.87411 10.44282 11.32797 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.001750 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.807401 B =15997.624325 C =16248.022055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.168 3.832 3 H 0.107 0.893 4 C 0.051 3.949 5 O -0.309 6.309 6 C 0.132 3.868 7 C -0.210 4.210 8 C -0.081 4.081 9 C -0.161 4.161 10 C -0.081 4.081 11 C -0.153 4.153 12 N -0.747 5.747 13 C 0.703 3.297 14 O -0.589 6.589 15 N -0.739 5.739 16 C 0.169 3.831 17 C -0.146 4.146 18 C 0.173 3.827 19 N -0.592 5.592 20 C -0.254 4.254 21 H 0.066 0.934 22 C 0.002 3.998 23 N -0.900 5.900 24 Si 0.902 3.098 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.149 3.851 29 C -0.138 4.138 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.397 0.603 41 H 0.390 0.610 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.088 0.912 47 H 0.254 0.746 48 H 0.020 0.980 49 H 0.058 0.942 50 H 0.054 0.946 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.355 -10.899 28.738 30.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.063 3.937 3 H 0.124 0.876 4 C -0.025 4.025 5 O -0.222 6.222 6 C 0.087 3.913 7 C -0.229 4.229 8 C -0.099 4.099 9 C -0.180 4.180 10 C -0.099 4.099 11 C -0.171 4.171 12 N -0.403 5.403 13 C 0.403 3.597 14 O -0.467 6.467 15 N -0.393 5.393 16 C 0.065 3.935 17 C -0.187 4.187 18 C 0.047 3.953 19 N -0.315 5.315 20 C -0.384 4.384 21 H 0.084 0.916 22 C -0.196 4.196 23 N -0.545 5.545 24 Si 0.732 3.268 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.022 3.978 29 C -0.179 4.179 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.231 0.769 41 H 0.223 0.777 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.039 0.961 46 H 0.106 0.894 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.853 -9.696 28.389 30.134 hybrid contribution -0.038 -1.161 -0.534 1.279 sum 2.815 -10.857 27.854 30.028 Atomic orbital electron populations 1.22141 0.94587 1.02837 1.02621 1.20827 0.95128 0.96392 0.81373 0.87570 1.23229 0.98272 0.81942 0.99047 1.86096 1.67155 1.26234 1.42762 1.19038 0.94039 0.91136 0.87133 1.21295 1.02711 1.01752 0.97140 1.20970 0.98261 0.93904 0.96767 1.21083 1.00092 0.96440 1.00361 1.20995 0.96441 0.99318 0.93170 1.20493 1.03809 0.92237 1.00587 1.45173 1.72512 1.13716 1.08939 1.16002 0.78346 0.85191 0.80202 1.90927 1.56871 1.14377 1.84548 1.45526 1.70618 1.13512 1.09597 1.20900 0.96511 0.95803 0.80263 1.22570 0.95665 1.01412 0.99024 1.20759 0.93558 0.92940 0.88031 1.44100 1.03813 1.73669 1.09917 1.19191 1.18630 1.13081 0.87471 0.91640 1.25059 1.01566 0.95254 0.97763 1.70049 1.30835 1.13941 1.39630 0.86281 0.78954 0.78584 0.82978 1.21514 1.21794 1.20414 1.20828 0.89254 0.96366 0.91387 1.22343 0.96974 1.00541 0.97995 0.91446 0.91951 0.91698 0.91183 0.90398 0.85469 0.85855 0.85978 0.85394 0.85141 0.76941 0.77734 0.90103 0.92839 0.92837 0.96134 0.89362 0.93610 0.96201 0.92376 0.92716 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.29 37.15 0.34 -1.30 16 2 C 0.17 1.62 2.98 -67.93 -0.20 1.42 16 3 H 0.11 1.12 7.58 -51.93 -0.39 0.73 16 4 C 0.05 0.36 4.48 37.16 0.17 0.53 16 5 O -0.31 -2.65 8.99 -19.42 -0.17 -2.83 16 6 C 0.13 1.11 6.69 -39.22 -0.26 0.85 16 7 C -0.21 -1.54 9.04 -39.44 -0.36 -1.89 16 8 C -0.08 -0.53 10.04 -39.61 -0.40 -0.93 16 9 C -0.16 -1.03 10.04 -39.56 -0.40 -1.42 16 10 C -0.08 -0.54 10.04 -39.61 -0.40 -0.94 16 11 C -0.15 -1.20 9.99 -39.43 -0.39 -1.59 16 12 N -0.75 -8.21 5.06 -58.67 -0.30 -8.50 16 13 C 0.70 10.65 8.49 -86.93 -0.74 9.91 16 14 O -0.59 -11.43 15.67 5.29 0.08 -11.35 16 15 N -0.74 -10.63 5.08 -58.63 -0.30 -10.93 16 16 C 0.17 3.00 2.42 -67.89 -0.16 2.84 16 17 C -0.15 -2.99 5.65 -26.61 -0.15 -3.14 16 18 C 0.17 4.29 5.31 -3.71 -0.02 4.27 16 19 N -0.59 -14.92 2.99 -172.33 -0.52 -15.44 16 20 C -0.25 -6.99 9.58 -15.06 -0.14 -7.13 16 21 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 22 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 23 N -0.90 -26.55 11.22 55.49 0.62 -25.93 16 24 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 C 0.15 3.09 6.51 -3.72 -0.02 3.07 16 29 C -0.14 -2.33 5.55 -26.61 -0.15 -2.47 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.66 7.56 -51.93 -0.39 0.27 16 33 H 0.07 0.45 7.65 -51.93 -0.40 0.05 16 34 H 0.08 0.44 7.67 -51.93 -0.40 0.04 16 35 H 0.13 0.74 6.30 -52.48 -0.33 0.41 16 36 H 0.12 0.56 8.06 -52.49 -0.42 0.13 16 37 H 0.12 0.54 8.06 -52.49 -0.42 0.11 16 38 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.40 3.59 8.40 -40.82 -0.34 3.25 16 41 H 0.39 4.46 8.62 -40.82 -0.35 4.11 16 42 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 47 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 1.16 7.94 -51.93 -0.41 0.75 16 50 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 51 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 409.84 15.07 6.18 6.18 Total: -1.00 -33.18 409.84 -11.15 -44.34 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -8.35 Total: 5.61 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -3.37 Total: 2.04 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.49 Total: -60.80 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.09 Total: -14.18 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.18 -11.15 -44.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730584647.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.909 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds