Wall clock time and date at job start Wed Apr 1 2020 04:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47453 * 2 1 4 4 C 1.53002 * 109.47418 * 120.00275 * 2 1 3 5 5 O 1.42900 * 109.47029 * 54.99335 * 4 2 1 6 6 C 1.35898 * 116.99675 * 180.02562 * 5 4 2 7 7 C 1.38729 * 120.06098 * 359.72787 * 6 5 4 8 8 C 1.38139 * 119.94740 * 179.74106 * 7 6 5 9 9 C 1.38271 * 120.05506 * 0.51495 * 8 7 6 10 10 C 1.38261 * 120.10837 * 359.76164 * 9 8 7 11 11 C 1.38142 * 120.06000 * 359.97438 * 10 9 8 12 12 N 1.46508 * 109.47031 * 240.00200 * 2 1 3 13 13 C 1.34772 * 120.00120 * 84.99757 * 12 2 1 14 14 O 1.21588 * 119.99982 * 0.02562 * 13 12 2 15 15 N 1.34772 * 119.99921 * 180.02562 * 13 12 2 16 16 C 1.46502 * 120.00143 * 180.02562 * 15 13 12 17 17 C 1.53045 * 109.45742 * 275.02880 * 16 15 13 18 18 C 1.53197 * 109.31150 * 178.59926 * 17 16 15 19 19 N 1.46924 * 108.76240 * 54.65360 * 18 17 16 20 20 C 1.36939 * 120.62718 * 126.36504 * 19 18 17 21 21 H 1.07998 * 119.99883 * 208.02130 * 20 19 18 22 22 C 1.38815 * 120.00340 * 28.01245 * 20 19 18 23 23 N 1.31621 * 119.99616 * 17.53080 * 22 20 19 24 24 Si 1.86802 * 120.00306 * 197.52495 * 22 20 19 25 25 H 1.48503 * 109.46706 * 94.07149 * 24 22 20 26 26 H 1.48491 * 109.47234 * 214.06996 * 24 22 20 27 27 H 1.48504 * 109.47013 * 334.07124 * 24 22 20 28 28 C 1.46916 * 118.74082 * 306.38122 * 19 18 17 29 29 C 1.53036 * 109.46393 * 154.97133 * 16 15 13 30 30 H 1.09004 * 109.47237 * 59.99396 * 1 2 3 31 31 H 1.09007 * 109.47116 * 300.00046 * 1 2 3 32 32 H 1.09001 * 109.47453 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47130 * 174.99868 * 4 2 1 34 34 H 1.08998 * 109.46455 * 294.99851 * 4 2 1 35 35 H 1.08004 * 120.02330 * 359.97438 * 7 6 5 36 36 H 1.08000 * 119.97353 * 180.27868 * 8 7 6 37 37 H 1.07998 * 119.94224 * 179.74323 * 9 8 7 38 38 H 1.07998 * 119.96982 * 179.97438 * 10 9 8 39 39 H 1.08001 * 120.03003 * 179.97438 * 11 10 9 40 40 H 0.96998 * 119.99536 * 265.00032 * 12 2 1 41 41 H 0.96998 * 120.00568 * 0.02562 * 15 13 12 42 42 H 1.09006 * 109.46195 * 34.99316 * 16 15 13 43 43 H 1.08997 * 109.49572 * 298.56140 * 17 16 15 44 44 H 1.09001 * 109.49759 * 58.66096 * 17 16 15 45 45 H 1.08996 * 109.59838 * 294.86202 * 18 17 16 46 46 H 1.09002 * 109.69588 * 174.50599 * 18 17 16 47 47 H 0.97003 * 119.99911 * 179.97438 * 23 22 20 48 48 H 1.08994 * 109.58896 * 293.82326 * 28 19 18 49 49 H 1.09001 * 109.70443 * 173.46664 * 28 19 18 50 50 H 1.08994 * 109.50127 * 301.33614 * 29 16 15 51 51 H 1.09005 * 109.49519 * 61.40250 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.4701 -2.0304 1.3094 6 6 1.8226 -2.8086 2.3663 7 6 2.7033 -2.3245 3.3226 8 6 3.0558 -3.1156 4.3988 9 6 2.5399 -4.3930 4.5177 10 6 1.6665 -4.8799 3.5628 11 6 1.3066 -4.0907 2.4876 12 7 2.0183 -0.6906 -1.1963 13 6 2.1469 -0.0183 -2.3572 14 8 1.8582 1.1616 -2.4117 15 7 2.5957 -0.6537 -3.4577 16 6 2.7361 0.0772 -4.7196 17 6 1.3929 0.0908 -5.4531 18 6 1.5347 0.8856 -6.7551 19 7 2.6429 0.3194 -7.5361 20 6 2.4537 -0.0682 -8.8358 21 1 3.0605 -0.8555 -9.2582 22 6 1.4820 0.5506 -9.6103 23 7 0.9858 1.7118 -9.2394 24 14 0.8789 -0.2647 -11.1791 25 1 -0.3392 -1.0620 -10.8857 26 1 0.5574 0.7776 -12.1866 27 1 1.9388 -1.1580 -11.7118 28 6 3.9576 0.1767 -6.8962 29 6 3.7887 -0.6098 -5.5925 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1263 -0.7995 1.2055 34 1 1.7517 -0.1583 2.1369 35 1 3.1100 -1.3285 3.2278 36 1 3.7378 -2.7375 5.1459 37 1 2.8200 -5.0114 5.3576 38 1 1.2653 -5.8781 3.6577 39 1 0.6246 -4.4717 1.7419 40 1 2.2489 -1.6318 -1.1527 41 1 2.8257 -1.5950 -3.4145 42 1 3.0475 1.1013 -4.5134 43 1 1.0930 -0.9319 -5.6818 44 1 0.6382 0.5592 -4.8214 45 1 1.7459 1.9298 -6.5248 46 1 0.6107 0.8178 -7.3293 47 1 0.3071 2.1445 -9.7808 48 1 4.3665 1.1631 -6.6774 49 1 4.6339 -0.3599 -7.5616 50 1 4.7393 -0.6402 -5.0601 51 1 3.4662 -1.6261 -5.8194 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730584647.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:47 Heat of formation + Delta-G solvation = -45.507415 kcal Electronic energy + Delta-G solvation = -30052.651535 eV Core-core repulsion = 25951.831406 eV Total energy + Delta-G solvation = -4100.820130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.43479 -40.89547 -39.24659 -38.46632 -36.49084 -35.81668 -34.00433 -32.45827 -31.87958 -31.59885 -30.83544 -30.36970 -27.87687 -26.87000 -24.24896 -23.88645 -23.55369 -23.23306 -22.10434 -21.50477 -21.04016 -19.52117 -19.13059 -18.66486 -17.76193 -16.95591 -16.91221 -16.67041 -16.56504 -16.20899 -15.82628 -15.52513 -15.45520 -15.34552 -15.12961 -14.76626 -14.48634 -14.41395 -14.27714 -14.15846 -14.02567 -13.47425 -13.36866 -13.16436 -13.02472 -12.73097 -12.62230 -12.59603 -12.44051 -12.12953 -12.11370 -12.01745 -11.91672 -11.85128 -11.69129 -11.52553 -11.42059 -11.15981 -10.58145 -10.30954 -9.91140 -9.74977 -9.13201 -8.71194 -7.86972 -5.33041 0.43474 0.53415 1.47499 1.49012 1.58426 1.68400 2.13204 2.24837 2.51923 2.89127 3.24822 3.32231 3.59973 3.67937 3.89767 3.94518 3.98629 4.05174 4.11247 4.26123 4.29097 4.35911 4.36657 4.47243 4.48860 4.54603 4.62202 4.68080 4.72372 4.80836 4.81402 4.86612 4.95150 5.06846 5.09818 5.12558 5.14533 5.28511 5.32949 5.40378 5.46206 5.52289 5.54527 5.62800 5.64846 5.65298 5.70122 5.88777 6.04962 6.39030 6.46550 7.13272 7.14736 7.63766 7.84881 8.37810 9.20124 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.001750 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.807401 B =15997.624325 C =16248.022055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.166 3.834 3 H 0.098 0.902 4 C 0.059 3.941 5 O -0.321 6.321 6 C 0.114 3.886 7 C -0.218 4.218 8 C -0.088 4.088 9 C -0.167 4.167 10 C -0.087 4.087 11 C -0.170 4.170 12 N -0.728 5.728 13 C 0.700 3.300 14 O -0.635 6.635 15 N -0.727 5.727 16 C 0.182 3.818 17 C -0.130 4.130 18 C 0.183 3.817 19 N -0.609 5.609 20 C -0.261 4.261 21 H 0.074 0.926 22 C -0.055 4.055 23 N -0.938 5.938 24 Si 0.969 3.031 25 H -0.288 1.288 26 H -0.297 1.297 27 H -0.263 1.263 28 C 0.141 3.859 29 C -0.121 4.121 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.130 0.870 40 H 0.410 0.590 41 H 0.409 0.591 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.042 0.958 45 H -0.011 1.011 46 H 0.054 0.946 47 H 0.249 0.751 48 H 0.012 0.988 49 H 0.068 0.932 50 H 0.091 0.909 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.818 -13.466 30.750 33.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.061 3.939 3 H 0.116 0.884 4 C -0.016 4.016 5 O -0.235 6.235 6 C 0.069 3.931 7 C -0.237 4.237 8 C -0.106 4.106 9 C -0.185 4.185 10 C -0.105 4.105 11 C -0.189 4.189 12 N -0.385 5.385 13 C 0.400 3.600 14 O -0.516 6.516 15 N -0.381 5.381 16 C 0.076 3.924 17 C -0.170 4.170 18 C 0.056 3.944 19 N -0.332 5.332 20 C -0.391 4.391 21 H 0.092 0.908 22 C -0.250 4.250 23 N -0.584 5.584 24 Si 0.797 3.203 25 H -0.215 1.215 26 H -0.224 1.224 27 H -0.188 1.188 28 C 0.015 3.985 29 C -0.160 4.160 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.158 0.842 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.148 0.852 40 H 0.246 0.754 41 H 0.245 0.755 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.007 0.993 46 H 0.072 0.928 47 H 0.058 0.942 48 H 0.030 0.970 49 H 0.087 0.913 50 H 0.109 0.891 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.353 -12.344 30.455 33.149 hybrid contribution -0.468 -0.362 -1.063 1.217 sum 3.885 -12.706 29.392 32.256 Atomic orbital electron populations 1.22075 0.94975 1.02524 1.02027 1.20930 0.94780 0.96419 0.81802 0.88440 1.23161 0.98728 0.81662 0.98099 1.86055 1.67599 1.26634 1.43224 1.19212 0.94925 0.91411 0.87522 1.21511 1.02531 1.02534 0.97102 1.21299 0.98385 0.93989 0.96961 1.21412 0.99624 0.96731 1.00769 1.21278 0.96361 1.00059 0.92782 1.20686 1.04342 0.92581 1.01290 1.45037 1.71249 1.14175 1.08029 1.16163 0.77997 0.84718 0.81115 1.90908 1.58719 1.16609 1.85346 1.45124 1.70525 1.14218 1.08247 1.20491 0.94948 0.95389 0.81541 1.22314 0.97377 1.00466 0.96856 1.20462 0.92250 0.92144 0.89530 1.44341 1.05541 1.73631 1.09707 1.19589 1.18337 1.12797 0.88362 0.90817 1.25876 1.02181 0.95781 1.01168 1.70219 1.31587 1.15574 1.41054 0.85224 0.78509 0.77460 0.79091 1.21463 1.22429 1.18757 1.21042 0.87287 0.96830 0.93303 1.22133 0.98301 0.99858 0.95709 0.94555 0.90032 0.91764 0.89994 0.88449 0.84167 0.83914 0.84052 0.83609 0.85158 0.75409 0.75458 0.92542 0.92288 0.93911 0.99253 0.92807 0.94210 0.96976 0.91324 0.89051 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 9.29 71.98 0.67 -2.43 16 2 C 0.17 3.00 2.98 44.99 0.13 3.14 16 3 H 0.10 2.00 7.58 -2.39 -0.02 1.99 16 4 C 0.06 0.72 4.48 71.98 0.32 1.04 16 5 O -0.32 -4.95 8.99 -92.40 -0.83 -5.78 16 6 C 0.11 1.74 6.69 22.51 0.15 1.89 16 7 C -0.22 -2.71 9.04 22.36 0.20 -2.51 16 8 C -0.09 -0.95 10.04 22.25 0.22 -0.72 16 9 C -0.17 -1.74 10.04 22.28 0.22 -1.52 16 10 C -0.09 -1.00 10.04 22.25 0.22 -0.77 16 11 C -0.17 -2.47 9.99 22.37 0.22 -2.25 16 12 N -0.73 -14.97 5.06 -457.81 -2.32 -17.29 16 13 C 0.70 20.66 8.49 179.06 1.52 22.18 16 14 O -0.63 -24.97 15.67 -3.99 -0.06 -25.04 16 15 N -0.73 -19.61 5.08 -457.68 -2.33 -21.94 16 16 C 0.18 6.31 2.42 45.02 0.11 6.42 16 17 C -0.13 -5.39 5.65 30.68 0.17 -5.21 16 18 C 0.18 9.43 5.31 86.36 0.46 9.89 16 19 N -0.61 -31.00 2.99 -699.12 -2.09 -33.09 16 20 C -0.26 -14.38 9.58 84.03 0.81 -13.58 16 21 H 0.07 3.88 7.89 -2.91 -0.02 3.86 16 22 C -0.05 -3.12 4.90 84.86 0.42 -2.71 16 23 N -0.94 -57.40 11.22 21.65 0.24 -57.15 16 24 Si 0.97 45.42 29.59 68.60 2.03 47.45 16 25 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 26 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 27 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 28 C 0.14 5.73 6.51 86.36 0.56 6.29 16 29 C -0.12 -3.74 5.55 30.67 0.17 -3.57 16 30 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.06 1.26 7.56 -2.39 -0.02 1.25 16 33 H 0.08 0.83 7.65 -2.39 -0.02 0.81 16 34 H 0.10 0.84 7.67 -2.39 -0.02 0.82 16 35 H 0.14 1.25 6.30 -2.91 -0.02 1.23 16 36 H 0.14 0.88 8.06 -2.91 -0.02 0.86 16 37 H 0.14 0.85 8.06 -2.91 -0.02 0.82 16 38 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.13 1.76 8.06 -2.91 -0.02 1.73 16 40 H 0.41 6.48 8.40 -92.71 -0.78 5.70 16 41 H 0.41 8.08 8.62 -92.71 -0.80 7.28 16 42 H 0.06 2.28 7.58 -2.38 -0.02 2.27 16 43 H 0.06 2.37 8.14 -2.39 -0.02 2.36 16 44 H 0.04 1.84 8.14 -2.39 -0.02 1.83 16 45 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 46 H 0.05 3.13 6.06 -2.39 -0.01 3.11 16 47 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 48 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.07 2.62 7.94 -2.39 -0.02 2.60 16 50 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 51 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -74.80 409.84 0.59 -74.21 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -0.64 Total: 23.06 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 6.59 Total: 15.57 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -6.49 Total: -129.47 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.89 Total: -30.81 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -74.80 0.59 -74.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730584647.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.702 kcal (2) G-P(sol) polarization free energy of solvation -74.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds