Wall clock time and date at job start Wed Apr 1 2020 04:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47261 * 2 1 4 4 C 1.53002 * 109.46953 * 240.00342 * 2 1 3 5 5 O 1.42904 * 109.47137 * 304.99932 * 4 2 1 6 6 C 1.35901 * 116.99822 * 179.97438 * 5 4 2 7 7 C 1.38735 * 120.05567 * 359.72423 * 6 5 4 8 8 C 1.38143 * 119.94079 * 179.73932 * 7 6 5 9 9 C 1.38270 * 120.05693 * 0.51915 * 8 7 6 10 10 C 1.38266 * 120.10941 * 359.75833 * 9 8 7 11 11 C 1.38145 * 120.05586 * 359.97438 * 10 9 8 12 12 N 1.46496 * 109.47144 * 120.00421 * 2 1 3 13 13 C 1.34774 * 120.00211 * 274.99780 * 12 2 1 14 14 O 1.21586 * 119.99704 * 359.97438 * 13 12 2 15 15 N 1.34774 * 120.00303 * 180.02562 * 13 12 2 16 16 C 1.46493 * 120.00256 * 180.02562 * 15 13 12 17 17 C 1.53349 * 109.42022 * 275.12556 * 16 15 13 18 18 C 1.53196 * 109.15353 * 178.67345 * 17 16 15 19 19 N 1.46928 * 108.89135 * 54.57497 * 18 17 16 20 20 C 1.36936 * 120.63013 * 126.29699 * 19 18 17 21 21 H 1.07999 * 120.00022 * 331.83633 * 20 19 18 22 22 C 1.38813 * 120.00005 * 151.82709 * 20 19 18 23 23 N 1.31618 * 120.00004 * 343.09585 * 22 20 19 24 24 Si 1.86806 * 119.99953 * 163.09475 * 22 20 19 25 25 H 1.48494 * 109.47083 * 60.00061 * 24 22 20 26 26 H 1.48500 * 109.46851 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47024 * 300.00112 * 24 22 20 28 28 C 1.46924 * 118.73859 * 306.32337 * 19 18 17 29 29 C 1.53044 * 109.46300 * 154.99736 * 16 15 13 30 30 H 1.09004 * 109.46803 * 299.99402 * 1 2 3 31 31 H 1.08994 * 109.47311 * 59.99462 * 1 2 3 32 32 H 1.08997 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47120 * 64.99616 * 4 2 1 34 34 H 1.08996 * 109.47229 * 184.99584 * 4 2 1 35 35 H 1.07998 * 120.03087 * 0.02562 * 7 6 5 36 36 H 1.07998 * 119.97518 * 180.27785 * 8 7 6 37 37 H 1.07997 * 119.94486 * 179.74392 * 9 8 7 38 38 H 1.07999 * 119.96733 * 179.97438 * 10 9 8 39 39 H 1.08002 * 120.02659 * 179.97438 * 11 10 9 40 40 H 0.97001 * 119.99959 * 95.00595 * 12 2 1 41 41 H 0.97003 * 119.99662 * 359.97438 * 15 13 12 42 42 H 1.09003 * 109.46113 * 35.02623 * 16 15 13 43 43 H 1.08998 * 109.68701 * 58.70834 * 17 16 15 44 44 H 1.09000 * 109.47234 * 298.50902 * 17 16 15 45 45 H 1.08996 * 109.58345 * 294.72319 * 18 17 16 46 46 H 1.08994 * 109.58644 * 174.43734 * 18 17 16 47 47 H 0.96996 * 119.99787 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.58664 * 173.39523 * 28 19 18 49 49 H 1.08996 * 109.58580 * 293.67452 * 28 19 18 50 50 H 1.08992 * 109.49619 * 61.43083 * 29 16 15 51 51 H 1.09005 * 109.49321 * 301.33398 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.4702 -2.0303 -1.3096 6 6 1.8225 -2.8085 -2.3665 7 6 2.6942 -2.3200 -3.3290 8 6 3.0551 -3.1150 -4.3995 9 6 2.5398 -4.3926 -4.5181 10 6 1.6664 -4.8797 -3.5632 11 6 1.3068 -4.0906 -2.4878 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8584 1.1614 2.4116 15 7 2.5969 -0.6537 3.4574 16 6 2.7363 0.0768 4.7194 17 6 4.0948 0.7876 4.7498 18 6 4.2204 1.5762 6.0571 19 7 3.9888 0.6652 7.1864 20 6 4.9051 0.5618 8.1987 21 1 5.9496 0.7548 8.0034 22 6 4.4915 0.2093 9.4760 23 7 3.2197 0.2972 9.8036 24 14 5.7398 -0.3900 10.7299 25 1 6.7560 0.6677 10.9611 26 1 5.0485 -0.7007 12.0069 27 1 6.4069 -1.6141 10.2181 28 6 2.7556 -0.1333 7.2085 29 6 2.6442 -0.9050 5.8898 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7515 -0.1582 -2.1370 34 1 3.1263 -0.7994 -1.2057 35 1 3.0940 -1.3208 -3.2389 36 1 3.7371 -2.7369 -5.1467 37 1 2.8199 -5.0111 -5.3579 38 1 1.2651 -5.8778 -3.6583 39 1 0.6242 -4.4714 -1.7425 40 1 2.2491 -1.6318 1.1524 41 1 2.8275 -1.5949 3.4137 42 1 1.9389 0.8155 4.8015 43 1 4.1706 1.4710 3.9040 44 1 4.8933 0.0478 4.6931 45 1 3.4793 2.3752 6.0744 46 1 5.2203 2.0035 6.1315 47 1 2.9307 0.0505 10.6960 48 1 2.7901 -0.8358 8.0411 49 1 1.8953 0.5262 7.3223 50 1 3.4561 -1.6289 5.8221 51 1 1.6874 -1.4261 5.8530 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730584648.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:52 Heat of formation + Delta-G solvation = -24.909582 kcal Electronic energy + Delta-G solvation = -30007.282330 eV Core-core repulsion = 25907.355390 eV Total energy + Delta-G solvation = -4099.926941 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.66402 -39.91337 -38.12057 -37.39498 -35.44511 -34.27937 -32.34231 -31.49841 -31.06167 -30.11845 -29.87229 -29.00616 -27.22761 -24.98427 -23.32697 -22.78299 -22.34166 -22.06724 -21.02383 -20.48798 -19.43621 -18.72078 -18.12012 -17.00600 -16.61190 -16.40254 -16.09548 -15.70748 -15.16548 -14.93939 -14.85693 -14.45965 -14.28155 -13.86474 -13.78412 -13.60753 -13.54913 -13.49204 -12.99685 -12.89260 -12.80671 -12.42844 -12.28911 -12.00928 -11.98270 -11.43813 -11.37910 -11.35828 -11.16762 -11.08506 -10.82380 -10.69905 -10.47113 -10.24962 -10.01810 -9.98576 -9.72189 -9.51489 -9.42533 -9.18332 -8.61523 -8.57412 -8.40961 -6.65858 -5.77498 -3.19583 0.91921 1.03820 2.67718 2.83451 3.38340 3.39559 3.39985 3.45161 3.46329 4.23114 4.33574 4.43257 4.51194 4.52731 4.61183 4.71215 4.80575 4.97180 4.99432 5.13080 5.21419 5.28862 5.36512 5.43978 5.52214 5.54624 5.58596 5.64528 5.76998 5.87966 5.93669 5.98885 6.11319 6.12133 6.12454 6.32613 6.34064 6.40038 6.46406 6.53926 6.60885 6.64832 6.83493 6.94165 6.99640 7.02485 7.15447 7.35078 7.64723 7.80901 8.18510 8.46916 8.78735 9.22958 9.86282 10.43613 11.31425 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019912 B = 0.001759 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.880021 B =15915.627498 C =16499.517439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.168 3.832 3 H 0.107 0.893 4 C 0.051 3.949 5 O -0.309 6.309 6 C 0.132 3.868 7 C -0.210 4.210 8 C -0.081 4.081 9 C -0.161 4.161 10 C -0.081 4.081 11 C -0.153 4.153 12 N -0.746 5.746 13 C 0.703 3.297 14 O -0.592 6.592 15 N -0.739 5.739 16 C 0.169 3.831 17 C -0.139 4.139 18 C 0.147 3.853 19 N -0.592 5.592 20 C -0.252 4.252 21 H 0.065 0.935 22 C 0.002 3.998 23 N -0.903 5.903 24 Si 0.903 3.097 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.284 1.284 28 C 0.174 3.826 29 C -0.146 4.146 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.397 0.603 41 H 0.391 0.609 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.020 0.980 46 H 0.055 0.945 47 H 0.254 0.746 48 H 0.091 0.909 49 H 0.021 0.979 50 H 0.059 0.941 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.850 -8.872 -29.115 30.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.063 3.937 3 H 0.124 0.876 4 C -0.025 4.025 5 O -0.223 6.223 6 C 0.086 3.914 7 C -0.229 4.229 8 C -0.099 4.099 9 C -0.180 4.180 10 C -0.099 4.099 11 C -0.171 4.171 12 N -0.403 5.403 13 C 0.403 3.597 14 O -0.470 6.470 15 N -0.392 5.392 16 C 0.065 3.935 17 C -0.179 4.179 18 C 0.020 3.980 19 N -0.315 5.315 20 C -0.382 4.382 21 H 0.083 0.917 22 C -0.197 4.197 23 N -0.548 5.548 24 Si 0.733 3.267 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.211 1.211 28 C 0.048 3.952 29 C -0.186 4.186 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.231 0.769 41 H 0.224 0.776 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.038 0.962 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.109 0.891 49 H 0.039 0.961 50 H 0.077 0.923 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.321 -7.807 -28.691 30.047 hybrid contribution 0.990 -1.119 0.417 1.551 sum -3.331 -8.926 -28.275 29.836 Atomic orbital electron populations 1.22138 0.94637 1.02807 1.02553 1.20824 0.95063 0.96425 0.81413 0.87570 1.23230 0.98339 0.81940 0.99009 1.86089 1.67165 1.26244 1.42788 1.19034 0.94121 0.91123 0.87077 1.21299 1.02830 1.01637 0.97112 1.20973 0.98189 0.93881 0.96840 1.21086 1.00058 0.96469 1.00346 1.20996 0.96461 0.99306 0.93165 1.20485 1.03786 0.92272 1.00589 1.45176 1.72481 1.13772 1.08898 1.16013 0.78228 0.85173 0.80311 1.90914 1.57363 1.14298 1.84406 1.45551 1.70307 1.13594 1.09728 1.20966 0.98151 0.94063 0.80298 1.22444 0.96495 0.99657 0.99339 1.20875 0.98910 0.91617 0.86566 1.44077 1.21564 1.44169 1.21705 1.19147 0.88626 1.43028 0.87363 0.91728 1.25054 0.96096 1.01813 0.96721 1.70016 1.14327 1.50779 1.19652 0.86365 0.80711 0.79028 0.80626 1.20893 1.21658 1.21090 1.20741 0.87932 0.93838 0.92711 1.22537 1.00369 0.98431 0.97261 0.91536 0.91950 0.91700 0.90398 0.91140 0.85461 0.85843 0.85972 0.85394 0.85158 0.76893 0.77627 0.90099 0.92707 0.92525 0.96173 0.92666 0.93567 0.89078 0.96058 0.92261 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.29 37.16 0.35 -1.21 16 2 C 0.17 1.58 2.98 -67.93 -0.20 1.38 16 3 H 0.11 1.10 7.58 -51.93 -0.39 0.71 16 4 C 0.05 0.36 4.48 37.16 0.17 0.53 16 5 O -0.31 -2.62 8.99 -19.43 -0.17 -2.79 16 6 C 0.13 1.10 6.69 -39.22 -0.26 0.84 16 7 C -0.21 -1.54 9.04 -39.43 -0.36 -1.90 16 8 C -0.08 -0.53 10.04 -39.60 -0.40 -0.93 16 9 C -0.16 -1.03 10.04 -39.56 -0.40 -1.43 16 10 C -0.08 -0.54 10.04 -39.61 -0.40 -0.93 16 11 C -0.15 -1.19 9.99 -39.43 -0.39 -1.58 16 12 N -0.75 -8.09 5.06 -58.68 -0.30 -8.38 16 13 C 0.70 10.48 8.49 -86.92 -0.74 9.74 16 14 O -0.59 -11.18 15.67 5.29 0.08 -11.10 16 15 N -0.74 -10.63 5.08 -58.48 -0.30 -10.93 16 16 C 0.17 3.01 2.42 -67.73 -0.16 2.84 16 17 C -0.14 -2.59 5.68 -26.45 -0.15 -2.74 16 18 C 0.15 3.22 6.51 -3.71 -0.02 3.19 16 19 N -0.59 -14.92 2.99 -172.32 -0.52 -15.44 16 20 C -0.25 -6.92 9.58 -15.06 -0.14 -7.07 16 21 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 22 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 23 N -0.90 -26.17 11.20 55.49 0.62 -25.55 16 24 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 29 C -0.15 -2.71 5.55 -26.61 -0.15 -2.86 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.63 7.56 -51.93 -0.39 0.23 16 33 H 0.08 0.43 7.65 -51.93 -0.40 0.03 16 34 H 0.07 0.46 7.67 -51.93 -0.40 0.06 16 35 H 0.13 0.75 6.30 -52.49 -0.33 0.41 16 36 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 37 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 39 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.40 3.58 8.40 -40.82 -0.34 3.24 16 41 H 0.39 4.57 8.62 -40.82 -0.35 4.22 16 42 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 49 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 51 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 409.84 15.07 6.18 6.18 Total: -1.00 -32.61 409.84 -11.15 -43.76 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -8.35 Total: 5.70 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -3.37 Total: 1.94 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.49 Total: -60.30 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.09 Total: -13.89 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.61 -11.15 -43.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730584648.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.854 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds