Wall clock time and date at job start Wed Apr 1 2020 04:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47261 * 2 1 4 4 C 1.53002 * 109.46953 * 240.00342 * 2 1 3 5 5 O 1.42904 * 109.47137 * 304.99932 * 4 2 1 6 6 C 1.35901 * 116.99822 * 179.97438 * 5 4 2 7 7 C 1.38735 * 120.05567 * 359.72423 * 6 5 4 8 8 C 1.38143 * 119.94079 * 179.73932 * 7 6 5 9 9 C 1.38270 * 120.05693 * 0.51915 * 8 7 6 10 10 C 1.38266 * 120.10941 * 359.75833 * 9 8 7 11 11 C 1.38145 * 120.05586 * 359.97438 * 10 9 8 12 12 N 1.46496 * 109.47144 * 120.00421 * 2 1 3 13 13 C 1.34774 * 120.00211 * 274.99780 * 12 2 1 14 14 O 1.21586 * 119.99704 * 359.97438 * 13 12 2 15 15 N 1.34774 * 120.00303 * 180.02562 * 13 12 2 16 16 C 1.46493 * 120.00256 * 180.02562 * 15 13 12 17 17 C 1.53349 * 109.42022 * 275.12556 * 16 15 13 18 18 C 1.53196 * 109.15353 * 178.67345 * 17 16 15 19 19 N 1.46928 * 108.89135 * 54.57497 * 18 17 16 20 20 C 1.36936 * 120.63013 * 126.29699 * 19 18 17 21 21 H 1.07999 * 120.00022 * 331.83633 * 20 19 18 22 22 C 1.38813 * 120.00005 * 151.82709 * 20 19 18 23 23 N 1.31618 * 120.00004 * 343.09585 * 22 20 19 24 24 Si 1.86806 * 119.99953 * 163.09475 * 22 20 19 25 25 H 1.48494 * 109.47083 * 60.00061 * 24 22 20 26 26 H 1.48500 * 109.46851 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47024 * 300.00112 * 24 22 20 28 28 C 1.46924 * 118.73859 * 306.32337 * 19 18 17 29 29 C 1.53044 * 109.46300 * 154.99736 * 16 15 13 30 30 H 1.09004 * 109.46803 * 299.99402 * 1 2 3 31 31 H 1.08994 * 109.47311 * 59.99462 * 1 2 3 32 32 H 1.08997 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47120 * 64.99616 * 4 2 1 34 34 H 1.08996 * 109.47229 * 184.99584 * 4 2 1 35 35 H 1.07998 * 120.03087 * 0.02562 * 7 6 5 36 36 H 1.07998 * 119.97518 * 180.27785 * 8 7 6 37 37 H 1.07997 * 119.94486 * 179.74392 * 9 8 7 38 38 H 1.07999 * 119.96733 * 179.97438 * 10 9 8 39 39 H 1.08002 * 120.02659 * 179.97438 * 11 10 9 40 40 H 0.97001 * 119.99959 * 95.00595 * 12 2 1 41 41 H 0.97003 * 119.99662 * 359.97438 * 15 13 12 42 42 H 1.09003 * 109.46113 * 35.02623 * 16 15 13 43 43 H 1.08998 * 109.68701 * 58.70834 * 17 16 15 44 44 H 1.09000 * 109.47234 * 298.50902 * 17 16 15 45 45 H 1.08996 * 109.58345 * 294.72319 * 18 17 16 46 46 H 1.08994 * 109.58644 * 174.43734 * 18 17 16 47 47 H 0.96996 * 119.99787 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.58664 * 173.39523 * 28 19 18 49 49 H 1.08996 * 109.58580 * 293.67452 * 28 19 18 50 50 H 1.08992 * 109.49619 * 61.43083 * 29 16 15 51 51 H 1.09005 * 109.49321 * 301.33398 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.4702 -2.0303 -1.3096 6 6 1.8225 -2.8085 -2.3665 7 6 2.6942 -2.3200 -3.3290 8 6 3.0551 -3.1150 -4.3995 9 6 2.5398 -4.3926 -4.5181 10 6 1.6664 -4.8797 -3.5632 11 6 1.3068 -4.0906 -2.4878 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8584 1.1614 2.4116 15 7 2.5969 -0.6537 3.4574 16 6 2.7363 0.0768 4.7194 17 6 4.0948 0.7876 4.7498 18 6 4.2204 1.5762 6.0571 19 7 3.9888 0.6652 7.1864 20 6 4.9051 0.5618 8.1987 21 1 5.9496 0.7548 8.0034 22 6 4.4915 0.2093 9.4760 23 7 3.2197 0.2972 9.8036 24 14 5.7398 -0.3900 10.7299 25 1 6.7560 0.6677 10.9611 26 1 5.0485 -0.7007 12.0069 27 1 6.4069 -1.6141 10.2181 28 6 2.7556 -0.1333 7.2085 29 6 2.6442 -0.9050 5.8898 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7515 -0.1582 -2.1370 34 1 3.1263 -0.7994 -1.2057 35 1 3.0940 -1.3208 -3.2389 36 1 3.7371 -2.7369 -5.1467 37 1 2.8199 -5.0111 -5.3579 38 1 1.2651 -5.8778 -3.6583 39 1 0.6242 -4.4714 -1.7425 40 1 2.2491 -1.6318 1.1524 41 1 2.8275 -1.5949 3.4137 42 1 1.9389 0.8155 4.8015 43 1 4.1706 1.4710 3.9040 44 1 4.8933 0.0478 4.6931 45 1 3.4793 2.3752 6.0744 46 1 5.2203 2.0035 6.1315 47 1 2.9307 0.0505 10.6960 48 1 2.7901 -0.8358 8.0411 49 1 1.8953 0.5262 7.3223 50 1 3.4561 -1.6289 5.8221 51 1 1.6874 -1.4261 5.8530 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730584648.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:51 Heat of formation + Delta-G solvation = -45.089831 kcal Electronic energy + Delta-G solvation = -30008.157412 eV Core-core repulsion = 25907.355390 eV Total energy + Delta-G solvation = -4100.802022 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.42984 -40.89199 -39.23619 -38.46376 -36.48854 -35.79784 -34.00743 -32.45540 -31.88688 -31.60245 -30.81458 -30.36400 -27.87028 -26.86395 -24.27740 -23.86657 -23.53774 -23.23354 -22.10781 -21.48336 -21.03232 -19.56093 -19.14231 -18.61230 -17.71704 -16.95410 -16.90993 -16.66656 -16.59784 -16.24187 -15.86523 -15.48118 -15.41462 -15.32457 -15.14050 -14.76097 -14.52230 -14.40863 -14.27640 -14.13045 -14.05049 -13.46651 -13.37742 -13.16529 -12.98890 -12.71934 -12.56976 -12.53768 -12.44224 -12.23585 -12.12113 -12.02609 -11.90738 -11.86146 -11.69958 -11.55042 -11.37169 -11.17871 -10.54385 -10.30166 -9.91243 -9.75261 -9.13315 -8.70075 -7.86998 -5.32760 0.43321 0.53291 1.49144 1.50934 1.58197 1.69176 2.12586 2.25203 2.52670 2.88985 3.24545 3.32534 3.60404 3.67712 3.91224 3.94822 3.98829 4.04998 4.07911 4.26379 4.29278 4.35723 4.36824 4.46932 4.48340 4.54497 4.62405 4.66272 4.73276 4.81263 4.82361 4.86322 4.94514 5.04944 5.07914 5.12434 5.16699 5.29228 5.31083 5.40309 5.47491 5.52243 5.54840 5.62410 5.65128 5.65168 5.70819 5.88547 6.04913 6.39694 6.46258 7.13555 7.15096 7.63234 7.84710 8.37976 9.20013 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019912 B = 0.001759 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.880021 B =15915.627498 C =16499.517439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.166 3.834 3 H 0.098 0.902 4 C 0.058 3.942 5 O -0.320 6.320 6 C 0.114 3.886 7 C -0.219 4.219 8 C -0.089 4.089 9 C -0.168 4.168 10 C -0.087 4.087 11 C -0.170 4.170 12 N -0.729 5.729 13 C 0.702 3.298 14 O -0.633 6.633 15 N -0.728 5.728 16 C 0.182 3.818 17 C -0.122 4.122 18 C 0.144 3.856 19 N -0.608 5.608 20 C -0.264 4.264 21 H 0.067 0.933 22 C -0.050 4.050 23 N -0.935 5.935 24 Si 0.970 3.030 25 H -0.277 1.277 26 H -0.295 1.295 27 H -0.276 1.276 28 C 0.179 3.821 29 C -0.128 4.128 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.147 0.853 39 H 0.131 0.869 40 H 0.409 0.591 41 H 0.408 0.592 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.007 0.993 46 H 0.057 0.943 47 H 0.251 0.749 48 H 0.063 0.937 49 H -0.005 1.005 50 H 0.070 0.930 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.701 -10.482 -31.504 33.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.061 3.939 3 H 0.116 0.884 4 C -0.018 4.018 5 O -0.234 6.234 6 C 0.069 3.931 7 C -0.237 4.237 8 C -0.107 4.107 9 C -0.186 4.186 10 C -0.105 4.105 11 C -0.188 4.188 12 N -0.386 5.386 13 C 0.402 3.598 14 O -0.514 6.514 15 N -0.382 5.382 16 C 0.076 3.924 17 C -0.163 4.163 18 C 0.018 3.982 19 N -0.332 5.332 20 C -0.394 4.394 21 H 0.085 0.915 22 C -0.245 4.245 23 N -0.581 5.581 24 Si 0.798 3.202 25 H -0.203 1.203 26 H -0.221 1.221 27 H -0.202 1.202 28 C 0.052 3.948 29 C -0.167 4.167 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.149 0.851 40 H 0.245 0.755 41 H 0.244 0.756 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.025 0.975 46 H 0.076 0.924 47 H 0.060 0.940 48 H 0.082 0.918 49 H 0.013 0.987 50 H 0.088 0.912 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.160 -9.466 -31.146 32.706 hybrid contribution 0.595 -0.588 1.072 1.360 sum -2.564 -10.054 -30.074 31.813 Atomic orbital electron populations 1.22068 0.94737 1.02572 1.02126 1.20934 0.94942 0.96367 0.81683 0.88428 1.23170 0.98660 0.81697 0.98231 1.86051 1.67563 1.26631 1.43197 1.19210 0.94974 0.91424 0.87462 1.21514 1.02701 1.02408 0.97100 1.21297 0.98338 0.93998 0.97047 1.21413 0.99627 0.96745 1.00776 1.21284 0.96360 1.00064 0.92777 1.20686 1.04296 0.92579 1.01284 1.45055 1.71267 1.14209 1.08031 1.16125 0.77906 0.84719 0.81092 1.90894 1.59068 1.16322 1.85138 1.45156 1.70356 1.14192 1.08523 1.20537 0.96767 0.93487 0.81562 1.22232 0.97225 0.99497 0.97328 1.20966 0.98560 0.91429 0.87233 1.44327 1.21522 1.45216 1.22110 1.19485 0.89235 1.42581 0.88147 0.91494 1.25831 0.97832 1.02302 0.98577 1.70180 1.16153 1.51967 1.19823 0.85312 0.78390 0.78662 0.77881 1.20290 1.22072 1.20153 1.20563 0.86578 0.93030 0.94602 1.22250 1.01953 0.97938 0.94583 0.94280 0.90057 0.91745 0.88415 0.90231 0.84216 0.83970 0.84077 0.83575 0.85055 0.75476 0.75605 0.92674 0.92220 0.91660 0.97529 0.92429 0.94019 0.91846 0.98737 0.91179 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.29 71.98 0.67 -2.18 16 2 C 0.17 2.89 2.98 44.99 0.13 3.02 16 3 H 0.10 1.94 7.58 -2.39 -0.02 1.92 16 4 C 0.06 0.70 4.48 71.98 0.32 1.02 16 5 O -0.32 -4.86 8.99 -92.44 -0.83 -5.69 16 6 C 0.11 1.73 6.69 22.51 0.15 1.88 16 7 C -0.22 -2.76 9.04 22.37 0.20 -2.56 16 8 C -0.09 -0.97 10.04 22.25 0.22 -0.75 16 9 C -0.17 -1.77 10.04 22.28 0.22 -1.55 16 10 C -0.09 -1.00 10.04 22.25 0.22 -0.77 16 11 C -0.17 -2.44 9.99 22.36 0.22 -2.22 16 12 N -0.73 -14.65 5.06 -457.83 -2.32 -16.97 16 13 C 0.70 20.16 8.49 179.06 1.52 21.68 16 14 O -0.63 -23.86 15.67 -3.99 -0.06 -23.92 16 15 N -0.73 -19.73 5.08 -457.20 -2.32 -22.05 16 16 C 0.18 6.34 2.42 45.12 0.11 6.45 16 17 C -0.12 -4.47 5.68 30.78 0.17 -4.29 16 18 C 0.14 6.36 6.51 86.36 0.56 6.92 16 19 N -0.61 -31.07 2.99 -699.11 -2.09 -33.16 16 20 C -0.26 -14.63 9.58 84.03 0.81 -13.82 16 21 H 0.07 3.60 7.88 -2.91 -0.02 3.57 16 22 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 23 N -0.94 -55.51 11.20 21.65 0.24 -55.27 16 24 Si 0.97 44.72 29.59 68.60 2.03 46.75 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 27 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 28 C 0.18 8.65 5.30 86.36 0.46 9.10 16 29 C -0.13 -4.62 5.55 30.67 0.17 -4.45 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.18 7.56 -2.39 -0.02 1.16 16 33 H 0.10 0.82 7.65 -2.38 -0.02 0.80 16 34 H 0.08 0.84 7.67 -2.39 -0.02 0.82 16 35 H 0.14 1.28 6.30 -2.91 -0.02 1.27 16 36 H 0.14 0.93 8.06 -2.91 -0.02 0.90 16 37 H 0.14 0.87 8.06 -2.91 -0.02 0.85 16 38 H 0.15 1.01 8.06 -2.91 -0.02 0.98 16 39 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 40 H 0.41 6.46 8.40 -92.71 -0.78 5.68 16 41 H 0.41 8.45 8.62 -92.71 -0.80 7.65 16 42 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 43 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.06 2.46 7.93 -2.39 -0.02 2.44 16 47 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 48 H 0.06 3.42 6.06 -2.39 -0.01 3.40 16 49 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 50 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 51 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 Total: -1.00 -71.75 409.84 0.59 -71.16 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -0.64 Total: 24.05 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 6.59 Total: 15.10 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -6.49 Total: -127.45 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.89 Total: -29.61 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -71.75 0.59 -71.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730584648.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.067 kcal (2) G-P(sol) polarization free energy of solvation -71.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds