Wall clock time and date at job start Wed Apr 1 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47135 * 2 1 4 4 C 1.39841 * 119.99709 * 269.99959 * 3 2 1 5 5 C 1.38921 * 119.99868 * 185.03735 * 4 3 2 6 6 C 1.38028 * 119.99919 * 179.72555 * 5 4 3 7 7 C 1.38924 * 119.99930 * 0.54764 * 6 5 4 8 8 N 1.39889 * 120.00397 * 179.70354 * 7 6 5 9 9 C 1.34784 * 120.00360 * 214.75569 * 8 7 6 10 10 O 1.21393 * 119.99286 * 5.43197 * 9 8 7 11 11 C 1.49318 * 120.00117 * 185.43567 * 9 8 7 12 12 O 1.21366 * 120.00259 * 359.97438 * 11 9 8 13 13 N 1.34776 * 120.00035 * 180.02562 * 11 9 8 14 14 C 1.46496 * 120.00254 * 180.02562 * 13 11 9 15 15 C 1.53004 * 109.47355 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47016 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99895 * 0.02562 * 16 15 14 18 18 C 1.37870 * 119.99807 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00193 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00128 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47232 * 89.99737 * 20 18 16 22 22 H 1.48500 * 109.46905 * 209.99957 * 20 18 16 23 23 H 1.48500 * 109.46814 * 330.00068 * 20 18 16 24 24 C 1.38934 * 120.00003 * 359.72561 * 7 6 5 25 25 C 1.38030 * 119.99702 * 359.97438 * 24 7 6 26 26 C 1.46495 * 120.00358 * 89.99951 * 3 2 1 27 27 C 1.52996 * 109.47013 * 295.06389 * 26 3 2 28 28 C 1.53001 * 109.47038 * 55.06293 * 26 3 2 29 29 H 1.09005 * 109.46990 * 300.00068 * 1 2 3 30 30 H 1.08991 * 109.47285 * 60.00264 * 1 2 3 31 31 H 1.09005 * 109.46719 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47036 * 119.99521 * 2 1 3 33 33 H 1.08995 * 109.47157 * 239.99383 * 2 1 3 34 34 H 1.07999 * 119.99914 * 359.97438 * 5 4 3 35 35 H 1.08002 * 119.99836 * 180.25101 * 6 5 4 36 36 H 0.96995 * 119.99908 * 34.75100 * 8 7 6 37 37 H 0.97005 * 119.99928 * 359.97438 * 13 11 9 38 38 H 1.08998 * 109.46867 * 299.99330 * 14 13 11 39 39 H 1.08999 * 109.47565 * 59.99131 * 14 13 11 40 40 H 1.08998 * 109.47042 * 299.99781 * 15 14 13 41 41 H 1.09004 * 109.46595 * 59.99938 * 15 14 13 42 42 H 0.97002 * 120.00115 * 180.02562 * 19 18 16 43 43 H 1.08001 * 120.00477 * 179.97438 * 24 7 6 44 44 H 1.07997 * 119.99762 * 179.97438 * 25 24 7 45 45 H 1.09003 * 109.47355 * 175.06807 * 26 3 2 46 46 H 1.09000 * 109.47450 * 65.18237 * 27 26 3 47 47 H 1.09006 * 109.47351 * 185.17885 * 27 26 3 48 48 H 1.09000 * 109.47378 * 305.18025 * 27 26 3 49 49 H 1.08997 * 109.46882 * 54.93108 * 28 26 3 50 50 H 1.09001 * 109.47110 * 174.92633 * 28 26 3 51 51 H 1.08996 * 109.47056 * 294.92750 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2514 2.0404 -1.2111 5 6 2.8127 3.3111 -1.2135 6 6 3.0480 3.9594 -2.4091 7 6 2.7130 3.3458 -3.6096 8 7 2.9457 4.0054 -4.8211 9 6 2.0917 3.8439 -5.8513 10 8 1.0698 3.2067 -5.6982 11 6 2.4025 4.4487 -7.1806 12 8 3.4239 5.0862 -7.3334 13 7 1.5482 4.2877 -8.2106 14 6 1.8534 4.8806 -9.5150 15 6 0.7307 4.5504 -10.5006 16 6 1.0444 5.1609 -11.8422 17 1 1.9538 5.7273 -11.9784 18 6 0.1705 4.9962 -12.8958 19 7 -0.9371 4.3068 -12.7299 20 14 0.5596 5.7523 -14.5591 21 1 1.3348 4.7829 -15.3744 22 1 -0.7066 6.0869 -15.2591 23 1 1.3601 6.9881 -14.3659 24 6 2.1464 2.0773 -3.6070 25 6 1.9168 1.4265 -2.4116 26 6 2.2625 2.0719 1.2686 27 6 0.9392 2.2489 2.0158 28 6 3.2240 1.2437 2.1234 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 3.0687 3.7901 -0.2799 35 1 3.4882 4.9457 -2.4111 36 1 3.7216 4.5790 -4.9198 37 1 0.7317 3.7785 -8.0884 38 1 1.9397 5.9622 -9.4111 39 1 2.7942 4.4752 -9.8873 40 1 0.6448 3.4687 -10.6043 41 1 -0.2103 4.9556 -10.1284 42 1 -1.5518 4.1906 -13.4712 43 1 1.8855 1.6004 -4.5402 44 1 1.4760 0.4406 -2.4095 45 1 2.7020 3.0497 1.0713 46 1 0.5454 1.2714 2.2941 47 1 1.1060 2.8426 2.9147 48 1 0.2234 2.7590 1.3712 49 1 4.1322 1.0412 1.5558 50 1 3.4764 1.7982 3.0272 51 1 2.7483 0.3017 2.3961 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784866328.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:00 Heat of formation + Delta-G solvation = -40.865538 kcal Electronic energy + Delta-G solvation = -29377.998385 eV Core-core repulsion = 25277.379543 eV Total energy + Delta-G solvation = -4100.618843 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.92080 -39.92187 -38.59742 -37.37438 -35.37387 -34.51797 -33.30071 -32.84543 -31.25311 -30.74921 -29.82695 -28.03886 -27.60947 -25.64777 -24.12498 -24.00110 -22.54951 -21.87051 -21.04527 -20.34026 -19.75446 -18.64353 -18.09320 -17.17526 -16.53543 -16.23509 -15.88708 -15.80030 -15.03786 -14.88023 -14.81918 -14.51507 -14.43842 -14.36841 -14.05074 -13.88185 -13.55672 -13.40670 -13.24987 -13.10725 -12.97791 -12.82837 -12.58985 -12.33458 -12.29588 -12.15561 -11.71673 -11.58316 -11.38283 -11.23408 -11.21403 -11.06272 -10.95658 -10.66883 -10.61656 -10.40269 -9.80196 -9.46770 -9.30567 -9.21974 -9.05429 -8.71276 -8.41919 -7.26667 -6.10033 -4.13795 1.12977 1.28091 1.77909 2.51907 2.75909 3.29299 3.35601 3.36180 3.39312 3.75197 3.86937 4.26066 4.40231 4.47543 4.59679 4.66731 4.70596 4.78895 4.91828 4.95170 5.01494 5.07570 5.11004 5.20267 5.26890 5.29169 5.30313 5.37367 5.42573 5.45539 5.51674 5.64126 5.78811 5.85880 5.87386 5.94311 6.06164 6.16916 6.23345 6.25098 6.36079 6.57840 6.67793 6.71149 7.03808 7.08589 7.27747 7.46508 7.57609 7.66341 7.87013 7.91058 8.19803 8.32004 8.91754 9.51187 11.01387 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027106 B = 0.001571 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.745097 B =17815.089494 C =18502.401698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.119 3.881 3 N -0.624 5.624 4 C 0.207 3.793 5 C -0.182 4.182 6 C -0.090 4.090 7 C 0.085 3.915 8 N -0.645 5.645 9 C 0.506 3.494 10 O -0.504 6.504 11 C 0.499 3.501 12 O -0.532 6.532 13 N -0.684 5.684 14 C 0.118 3.882 15 C 0.010 3.990 16 C -0.524 4.524 17 H 0.060 0.940 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.898 3.102 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.272 1.272 24 C -0.067 4.067 25 C -0.177 4.177 26 C 0.141 3.859 27 C -0.166 4.166 28 C -0.164 4.164 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.420 0.580 37 H 0.411 0.589 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.263 0.737 43 H 0.133 0.867 44 H 0.125 0.875 45 H 0.091 0.909 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.065 0.935 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.859 -7.524 32.926 34.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.004 4.004 3 N -0.336 5.336 4 C 0.106 3.894 5 C -0.205 4.205 6 C -0.111 4.111 7 C -0.009 4.009 8 N -0.292 5.292 9 C 0.288 3.712 10 O -0.378 6.378 11 C 0.279 3.721 12 O -0.410 6.410 13 N -0.335 5.335 14 C -0.003 4.003 15 C -0.027 4.027 16 C -0.562 4.562 17 H 0.079 0.921 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.088 4.088 25 C -0.199 4.199 26 C 0.037 3.963 27 C -0.224 4.224 28 C -0.222 4.222 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.257 0.743 37 H 0.247 0.753 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.151 0.849 44 H 0.143 0.857 45 H 0.109 0.891 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.079 0.921 50 H 0.084 0.916 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.654 -7.664 32.888 34.419 hybrid contribution -0.011 0.396 -0.935 1.016 sum 6.644 -7.268 31.953 33.436 Atomic orbital electron populations 1.22410 0.96489 1.01952 1.02998 1.21334 0.94005 0.82607 1.02483 1.46664 1.71715 1.12891 1.02282 1.17832 0.94033 0.91791 0.85743 1.20445 1.07102 0.95174 0.97778 1.20654 1.00849 0.99161 0.90417 1.17506 1.05958 0.92840 0.84629 1.43093 1.27868 1.47771 1.10501 1.20563 0.83397 0.81359 0.85855 1.90774 1.24506 1.39133 1.83403 1.19813 0.84869 0.82279 0.85179 1.90743 1.25747 1.40667 1.83823 1.46231 1.23629 1.52542 1.11111 1.21954 1.01232 0.97475 0.79648 1.19366 0.92590 0.97931 0.92820 1.21011 1.06676 1.33943 0.94608 0.92149 1.24999 0.94897 0.95160 0.99195 1.69960 1.10804 1.40165 1.32111 0.86495 0.77750 0.79628 0.83571 1.20549 1.21157 1.19723 1.20919 0.96959 0.92311 0.98573 1.20550 1.07494 1.01428 0.90456 1.21014 0.95296 0.96564 0.83420 1.22331 0.97675 1.02151 1.00272 1.22192 0.99590 1.00562 0.99856 0.92002 0.92073 0.92060 0.90893 0.90787 0.85638 0.85612 0.74291 0.75332 0.91782 0.91792 0.95635 0.95621 0.92776 0.84915 0.85681 0.89128 0.92156 0.91908 0.92090 0.92087 0.91618 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 9.96 37.16 0.37 -0.73 16 2 C 0.12 0.72 5.34 -4.04 -0.02 0.70 16 3 N -0.62 -4.51 2.54 -164.13 -0.42 -4.93 16 4 C 0.21 1.94 6.54 -83.70 -0.55 1.40 16 5 C -0.18 -1.64 9.31 -39.41 -0.37 -2.01 16 6 C -0.09 -0.89 9.96 -39.40 -0.39 -1.28 16 7 C 0.09 1.03 6.25 -83.67 -0.52 0.50 16 8 N -0.65 -8.12 5.32 -10.26 -0.05 -8.18 16 9 C 0.51 7.74 7.61 -11.64 -0.09 7.66 16 10 O -0.50 -8.54 14.26 5.46 0.08 -8.46 16 11 C 0.50 8.59 7.88 -11.65 -0.09 8.50 16 12 O -0.53 -10.01 16.48 5.48 0.09 -9.92 16 13 N -0.68 -12.43 5.55 -60.78 -0.34 -12.77 16 14 C 0.12 2.47 5.61 -4.04 -0.02 2.44 16 15 C 0.01 0.26 5.09 -27.88 -0.14 0.11 16 16 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 17 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 20 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 C -0.07 -0.83 8.64 -39.40 -0.34 -1.17 16 25 C -0.18 -1.85 9.11 -39.40 -0.36 -2.21 16 26 C 0.14 0.79 3.20 -67.93 -0.22 0.57 16 27 C -0.17 -0.85 8.18 37.16 0.30 -0.54 16 28 C -0.16 -0.73 8.94 37.16 0.33 -0.40 16 29 H 0.06 0.37 5.54 -51.93 -0.29 0.08 16 30 H 0.06 0.48 8.04 -51.93 -0.42 0.06 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.35 6.29 -51.93 -0.33 0.03 16 33 H 0.07 0.46 6.43 -51.93 -0.33 0.13 16 34 H 0.13 0.88 5.73 -52.49 -0.30 0.58 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.42 4.56 8.30 -40.82 -0.34 4.23 16 37 H 0.41 7.10 7.94 -40.82 -0.32 6.78 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.13 1.80 6.52 -52.49 -0.34 1.46 16 44 H 0.13 1.14 6.21 -52.49 -0.33 0.82 16 45 H 0.09 0.50 5.30 -51.93 -0.28 0.23 16 46 H 0.06 0.29 6.46 -51.93 -0.34 -0.04 16 47 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 51 H 0.06 0.25 6.77 -51.93 -0.35 -0.11 16 LS Contribution 411.43 15.07 6.20 6.20 Total: -1.00 -31.51 411.43 -8.97 -40.48 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -7.73 Total: 6.26 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -2.52 Total: 0.42 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.07 Total: -51.21 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.17 Total: -18.39 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.51 -8.97 -40.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784866328.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.387 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds