Wall clock time and date at job start Wed Apr 1 2020 06:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47135 * 2 1 4 4 C 1.39841 * 119.99709 * 269.99959 * 3 2 1 5 5 C 1.38921 * 119.99868 * 185.03735 * 4 3 2 6 6 C 1.38028 * 119.99919 * 179.72555 * 5 4 3 7 7 C 1.38924 * 119.99930 * 0.54764 * 6 5 4 8 8 N 1.39889 * 120.00397 * 179.70354 * 7 6 5 9 9 C 1.34784 * 120.00360 * 214.75569 * 8 7 6 10 10 O 1.21393 * 119.99286 * 5.43197 * 9 8 7 11 11 C 1.49318 * 120.00117 * 185.43567 * 9 8 7 12 12 O 1.21366 * 120.00259 * 359.97438 * 11 9 8 13 13 N 1.34776 * 120.00035 * 180.02562 * 11 9 8 14 14 C 1.46496 * 120.00254 * 180.02562 * 13 11 9 15 15 C 1.53004 * 109.47355 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47016 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99895 * 0.02562 * 16 15 14 18 18 C 1.37870 * 119.99807 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00193 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00128 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47232 * 89.99737 * 20 18 16 22 22 H 1.48500 * 109.46905 * 209.99957 * 20 18 16 23 23 H 1.48500 * 109.46814 * 330.00068 * 20 18 16 24 24 C 1.38934 * 120.00003 * 359.72561 * 7 6 5 25 25 C 1.38030 * 119.99702 * 359.97438 * 24 7 6 26 26 C 1.46495 * 120.00358 * 89.99951 * 3 2 1 27 27 C 1.52996 * 109.47013 * 295.06389 * 26 3 2 28 28 C 1.53001 * 109.47038 * 55.06293 * 26 3 2 29 29 H 1.09005 * 109.46990 * 300.00068 * 1 2 3 30 30 H 1.08991 * 109.47285 * 60.00264 * 1 2 3 31 31 H 1.09005 * 109.46719 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47036 * 119.99521 * 2 1 3 33 33 H 1.08995 * 109.47157 * 239.99383 * 2 1 3 34 34 H 1.07999 * 119.99914 * 359.97438 * 5 4 3 35 35 H 1.08002 * 119.99836 * 180.25101 * 6 5 4 36 36 H 0.96995 * 119.99908 * 34.75100 * 8 7 6 37 37 H 0.97005 * 119.99928 * 359.97438 * 13 11 9 38 38 H 1.08998 * 109.46867 * 299.99330 * 14 13 11 39 39 H 1.08999 * 109.47565 * 59.99131 * 14 13 11 40 40 H 1.08998 * 109.47042 * 299.99781 * 15 14 13 41 41 H 1.09004 * 109.46595 * 59.99938 * 15 14 13 42 42 H 0.97002 * 120.00115 * 180.02562 * 19 18 16 43 43 H 1.08001 * 120.00477 * 179.97438 * 24 7 6 44 44 H 1.07997 * 119.99762 * 179.97438 * 25 24 7 45 45 H 1.09003 * 109.47355 * 175.06807 * 26 3 2 46 46 H 1.09000 * 109.47450 * 65.18237 * 27 26 3 47 47 H 1.09006 * 109.47351 * 185.17885 * 27 26 3 48 48 H 1.09000 * 109.47378 * 305.18025 * 27 26 3 49 49 H 1.08997 * 109.46882 * 54.93108 * 28 26 3 50 50 H 1.09001 * 109.47110 * 174.92633 * 28 26 3 51 51 H 1.08996 * 109.47056 * 294.92750 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2514 2.0404 -1.2111 5 6 2.8127 3.3111 -1.2135 6 6 3.0480 3.9594 -2.4091 7 6 2.7130 3.3458 -3.6096 8 7 2.9457 4.0054 -4.8211 9 6 2.0917 3.8439 -5.8513 10 8 1.0698 3.2067 -5.6982 11 6 2.4025 4.4487 -7.1806 12 8 3.4239 5.0862 -7.3334 13 7 1.5482 4.2877 -8.2106 14 6 1.8534 4.8806 -9.5150 15 6 0.7307 4.5504 -10.5006 16 6 1.0444 5.1609 -11.8422 17 1 1.9538 5.7273 -11.9784 18 6 0.1705 4.9962 -12.8958 19 7 -0.9371 4.3068 -12.7299 20 14 0.5596 5.7523 -14.5591 21 1 1.3348 4.7829 -15.3744 22 1 -0.7066 6.0869 -15.2591 23 1 1.3601 6.9881 -14.3659 24 6 2.1464 2.0773 -3.6070 25 6 1.9168 1.4265 -2.4116 26 6 2.2625 2.0719 1.2686 27 6 0.9392 2.2489 2.0158 28 6 3.2240 1.2437 2.1234 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 3.0687 3.7901 -0.2799 35 1 3.4882 4.9457 -2.4111 36 1 3.7216 4.5790 -4.9198 37 1 0.7317 3.7785 -8.0884 38 1 1.9397 5.9622 -9.4111 39 1 2.7942 4.4752 -9.8873 40 1 0.6448 3.4687 -10.6043 41 1 -0.2103 4.9556 -10.1284 42 1 -1.5518 4.1906 -13.4712 43 1 1.8855 1.6004 -4.5402 44 1 1.4760 0.4406 -2.4095 45 1 2.7020 3.0497 1.0713 46 1 0.5454 1.2714 2.2941 47 1 1.1060 2.8426 2.9147 48 1 0.2234 2.7590 1.3712 49 1 4.1322 1.0412 1.5558 50 1 3.4764 1.7982 3.0272 51 1 2.7483 0.3017 2.3961 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784866328.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:59 Heat of formation + Delta-G solvation = -60.073481 kcal Electronic energy + Delta-G solvation = -29378.831304 eV Core-core repulsion = 25277.379543 eV Total energy + Delta-G solvation = -4101.451762 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.06764 -40.81167 -39.77668 -38.24088 -36.89566 -35.67331 -34.79434 -33.82437 -32.01559 -31.68490 -31.47285 -28.81773 -28.07080 -27.27379 -25.43824 -24.75383 -23.55700 -22.77127 -22.56120 -21.48715 -20.49799 -19.82894 -18.90507 -18.58680 -18.08788 -17.34642 -17.18307 -16.75608 -16.50514 -16.23716 -15.97123 -15.58244 -15.32557 -15.10971 -15.00718 -14.84965 -14.57981 -14.42215 -14.30539 -14.06557 -13.86738 -13.68584 -13.51589 -13.26542 -13.12488 -12.94687 -12.93741 -12.71289 -12.63977 -12.52506 -12.28837 -12.21037 -12.09787 -11.74911 -11.68989 -11.63070 -11.44086 -11.27038 -10.72821 -10.61634 -10.23853 -10.10621 -9.89023 -8.23301 -7.99641 -6.34651 0.03353 0.48096 0.72197 1.27655 1.43861 1.44083 1.55717 2.06640 2.17830 2.39984 2.65438 2.91729 3.11730 3.36554 3.76694 3.89338 4.05465 4.17749 4.18718 4.33435 4.37710 4.43177 4.44794 4.45347 4.48491 4.51783 4.61487 4.76622 4.78203 4.80021 4.80819 4.89983 4.99794 5.04841 5.04916 5.11669 5.14551 5.24814 5.30006 5.40001 5.40530 5.42667 5.45476 5.49569 5.54474 5.75173 5.83711 5.99847 6.12588 6.33634 6.45062 6.58593 6.70684 6.79636 6.88607 7.34995 8.88670 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027106 B = 0.001571 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.745097 B =17815.089494 C =18502.401698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.115 3.885 3 N -0.621 5.621 4 C 0.211 3.789 5 C -0.184 4.184 6 C -0.081 4.081 7 C 0.055 3.945 8 N -0.626 5.626 9 C 0.511 3.489 10 O -0.526 6.526 11 C 0.505 3.495 12 O -0.546 6.546 13 N -0.687 5.687 14 C 0.138 3.862 15 C 0.017 3.983 16 C -0.545 4.545 17 H 0.065 0.935 18 C 0.005 3.995 19 N -0.928 5.928 20 Si 0.968 3.032 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.263 1.263 24 C -0.082 4.082 25 C -0.187 4.187 26 C 0.135 3.865 27 C -0.161 4.161 28 C -0.158 4.158 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.428 0.572 37 H 0.415 0.585 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.008 0.992 41 H 0.008 0.992 42 H 0.265 0.735 43 H 0.112 0.888 44 H 0.131 0.869 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.077 0.923 48 H 0.044 0.956 49 H 0.052 0.948 50 H 0.079 0.921 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.056 -7.062 35.061 36.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.008 4.008 3 N -0.331 5.331 4 C 0.108 3.892 5 C -0.206 4.206 6 C -0.102 4.102 7 C -0.039 4.039 8 N -0.274 5.274 9 C 0.293 3.707 10 O -0.402 6.402 11 C 0.285 3.715 12 O -0.424 6.424 13 N -0.338 5.338 14 C 0.015 3.985 15 C -0.020 4.020 16 C -0.584 4.584 17 H 0.084 0.916 18 C -0.194 4.194 19 N -0.567 5.567 20 Si 0.793 3.207 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.187 1.187 24 C -0.103 4.103 25 C -0.210 4.210 26 C 0.032 3.968 27 C -0.220 4.220 28 C -0.216 4.216 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.267 0.733 37 H 0.251 0.749 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.074 0.926 43 H 0.130 0.870 44 H 0.149 0.851 45 H 0.112 0.888 46 H 0.081 0.919 47 H 0.095 0.905 48 H 0.063 0.937 49 H 0.071 0.929 50 H 0.098 0.902 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.880 -7.211 35.090 36.680 hybrid contribution -0.378 0.182 -1.398 1.459 sum 7.502 -7.028 33.692 35.226 Atomic orbital electron populations 1.22358 0.96486 1.02461 1.02036 1.21454 0.93943 0.82160 1.03228 1.46888 1.70760 1.13266 1.02206 1.17984 0.93041 0.92020 0.86179 1.20750 1.06402 0.94953 0.98501 1.20902 0.99696 0.99915 0.89651 1.17681 1.08161 0.93205 0.84852 1.42950 1.27234 1.47062 1.10109 1.20089 0.83659 0.81414 0.85584 1.90773 1.25522 1.40338 1.83542 1.20076 0.84142 0.81621 0.85616 1.90728 1.26234 1.41247 1.84232 1.46060 1.24225 1.52852 1.10629 1.21506 0.99445 0.97451 0.80092 1.19191 0.93162 0.96433 0.93223 1.21453 1.06942 1.34079 0.95879 0.91633 1.25919 0.94657 0.95548 1.03251 1.70081 1.11835 1.41433 1.33399 0.85396 0.77694 0.79026 0.78622 1.19789 1.20777 1.18736 1.20871 0.97954 0.92992 0.98493 1.20608 1.08042 1.01878 0.90452 1.21207 0.95958 0.96838 0.82785 1.22281 0.96865 1.02403 1.00403 1.22141 0.98784 1.00729 0.99966 0.91732 0.94158 0.90893 0.89084 0.91112 0.83187 0.83333 0.73307 0.74887 0.91847 0.91869 0.97385 0.97385 0.92595 0.86957 0.85087 0.88803 0.91852 0.90452 0.93675 0.92872 0.90213 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 9.96 71.98 0.72 -1.23 16 2 C 0.11 1.22 5.34 86.38 0.46 1.68 16 3 N -0.62 -7.91 2.54 -673.18 -1.71 -9.62 16 4 C 0.21 3.70 6.54 38.19 0.25 3.95 16 5 C -0.18 -2.93 9.31 22.38 0.21 -2.72 16 6 C -0.08 -1.46 9.96 22.38 0.22 -1.24 16 7 C 0.06 1.31 6.25 38.19 0.24 1.55 16 8 N -0.63 -15.62 5.32 -304.72 -1.62 -17.24 16 9 C 0.51 15.84 7.61 87.23 0.66 16.51 16 10 O -0.53 -18.36 14.26 -3.38 -0.05 -18.41 16 11 C 0.51 17.50 7.88 87.23 0.69 18.18 16 12 O -0.55 -20.38 16.48 -3.30 -0.05 -20.44 16 13 N -0.69 -25.43 5.55 -464.55 -2.58 -28.00 16 14 C 0.14 5.81 5.61 86.38 0.48 6.30 16 15 C 0.02 0.89 5.09 29.85 0.15 1.04 16 16 C -0.55 -30.22 9.11 25.60 0.23 -29.99 16 17 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 18 C 0.00 0.28 5.46 84.65 0.46 0.74 16 19 N -0.93 -55.06 13.29 21.45 0.28 -54.78 16 20 Si 0.97 43.52 29.54 68.60 2.03 45.55 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 24 C -0.08 -2.10 8.64 22.39 0.19 -1.90 16 25 C -0.19 -3.92 9.11 22.38 0.20 -3.72 16 26 C 0.13 1.18 3.20 44.99 0.14 1.33 16 27 C -0.16 -1.28 8.18 71.98 0.59 -0.69 16 28 C -0.16 -0.98 8.94 71.98 0.64 -0.33 16 29 H 0.06 0.68 5.54 -2.38 -0.01 0.67 16 30 H 0.04 0.62 8.04 -2.39 -0.02 0.60 16 31 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.09 0.66 6.29 -2.38 -0.02 0.65 16 33 H 0.07 0.81 6.43 -2.39 -0.02 0.80 16 34 H 0.15 1.62 5.73 -2.91 -0.02 1.61 16 35 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 36 H 0.43 8.98 8.30 -92.71 -0.77 8.21 16 37 H 0.41 14.84 7.94 -92.70 -0.74 14.10 16 38 H 0.06 2.68 8.14 -2.39 -0.02 2.67 16 39 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 43 H 0.11 3.26 6.52 -2.91 -0.02 3.24 16 44 H 0.13 2.46 6.21 -2.91 -0.02 2.44 16 45 H 0.09 0.76 5.30 -2.39 -0.01 0.75 16 46 H 0.06 0.47 6.46 -2.39 -0.02 0.45 16 47 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 48 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.05 0.43 8.14 -2.39 -0.02 0.42 16 50 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 51 H 0.06 0.34 6.77 -2.39 -0.02 0.33 16 Total: -1.00 -67.79 411.43 2.32 -65.47 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: -0.54 Total: 28.03 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 6.56 Total: 9.44 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -5.62 Total: -109.65 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -0.10 Total: -38.85 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -67.79 2.32 -65.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784866328.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.401 kcal (2) G-P(sol) polarization free energy of solvation -67.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds